| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498469
Identifier: 34498469
GI number: 34498469
Start: 3290915
End: 3292108
Strand: Direct
Name: 34498469
Synonym: CV_3014
Alternate gene names: NA
Gene position: 3290915-3292108 (Clockwise)
Preceding gene: 34498468
Following gene: 34498476
Centisome position: 69.27
GC content: 67.17
Gene sequence:
>1194_bases ATGAAAACCAACAAGTACCTGATCGAAGCGCTGCTGTTTTCCAGCTATGTGCTGTTCGGCATGAGCTGGGCCGGCGGCAG CGCCTTCATTCCGCAGATCATGCGCGAACTGGGCGTGCACGACCTGGCCGCCGGCTCCCACATCAGCAACGCCGTGGCCG CCGCCAAGCTGCTGGGCACCTTCGTCGCCGCCGGCATCTTGTCGCGGCTGCTGGCGAAAAAGGCGGTGGCGCTGGCCATG GCGCTGATGGCGCTGGGCGCGCTGACGCCCTTCGTGCACAGCTACCCCTGGCTGCTGCTGGTGCGCTTCCTGATGGGACT GGGCGGCGCGCTGGTCATCGTCTATTTCTCGCCCATCGTCATGCAATGGTTCGCGCCAAGCGAGCGCCCATTCGTCAATG GCTTGAATTCGGTGGCCTTCAACATCGGCACCGCCGCCATCCTGTTCGGACTGCCGGCCATGCTGGGCTGGTTCCAGGAC TGGCAGACCACGCTGCTCGCCATTTCGCTGGGCAGCGTGCTGTGCCTGGCGCTGTGGCTGGTTTTCGGCGCGGATGGCGC GGCGGAAGCAAAGCAGGCCGACTCGGGGCCGCGCCATACGCTGTGGCAGGGGCTGAAGGAGCGCTTCAACTGGCTGCTGG CCTTCACCTACAGCGGCACGCTGTCCTTCTACGTGATCCTGTTCAGCTTCTACCAGAACGCCGGCATCCAGCAGGCGAAA TACGTGGTGCTCGCCGGACTGGCCGGCACGGTGGCCGGCATCTGGCTGGCCAGGCGCGTGACGCGCCGGCTGCCGCTGCT GCGGCTGTCCGGGCTGCTGCAACTGCTGGCGGTGATCGGCCTGCATGCCCAGGTTTGGGGATGGAGCGACGACGCGGGGC TGGTCACCGCCGCGGCGCTGGCGGCCGGCTTCTTCATCTTCCTGCCCATCACCAGCCTGGTGACGCTGGCGCAGGAGCAG CCGGGCATGACGCCGGACAAGGCGGCGGTCACTTTCAGCCTGTTCTGGTTCCTCAGCTATCTGCTGGCCACGGTGGCGCC CTACCTGTTCGGCAAGCTGGTGGACCTGCGCGGCGGCGATTACGGGCTGGCGATGGCGTTCGCCACGCTGCTGTCGTCCA CCTTCCTGCTGGGCTCGCTGCTGATGCGCGAAACGCGGGAGCCCGCCGCGCGCCAGGCCGCTCAGGGCGCTTAG
Upstream 100 bases:
>100_bases CGCTGGACAGCCACGTCCCAGGCTGGGCTGGCTGAAAAGACAGGTTTCACCGCAGCCGGCCTCGCTAAAACTGGCAGTTT CGATACTCGTCGAGGCAGGG
Downstream 100 bases:
>100_bases ATACGGCGCAAATTAAGGCTGGCCGGCACGCGCAGATCGCGCTCGGCCAACGCCTCGCCCTGCAGTAGCGCCAGCACCTG GCCCAGGCTGGCCTCGGCCA
Product: transmembrane transport protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 397; Mature: 397
Protein sequence:
>397_residues MKTNKYLIEALLFSSYVLFGMSWAGGSAFIPQIMRELGVHDLAAGSHISNAVAAAKLLGTFVAAGILSRLLAKKAVALAM ALMALGALTPFVHSYPWLLLVRFLMGLGGALVIVYFSPIVMQWFAPSERPFVNGLNSVAFNIGTAAILFGLPAMLGWFQD WQTTLLAISLGSVLCLALWLVFGADGAAEAKQADSGPRHTLWQGLKERFNWLLAFTYSGTLSFYVILFSFYQNAGIQQAK YVVLAGLAGTVAGIWLARRVTRRLPLLRLSGLLQLLAVIGLHAQVWGWSDDAGLVTAAALAAGFFIFLPITSLVTLAQEQ PGMTPDKAAVTFSLFWFLSYLLATVAPYLFGKLVDLRGGDYGLAMAFATLLSSTFLLGSLLMRETREPAARQAAQGA
Sequences:
>Translated_397_residues MKTNKYLIEALLFSSYVLFGMSWAGGSAFIPQIMRELGVHDLAAGSHISNAVAAAKLLGTFVAAGILSRLLAKKAVALAM ALMALGALTPFVHSYPWLLLVRFLMGLGGALVIVYFSPIVMQWFAPSERPFVNGLNSVAFNIGTAAILFGLPAMLGWFQD WQTTLLAISLGSVLCLALWLVFGADGAAEAKQADSGPRHTLWQGLKERFNWLLAFTYSGTLSFYVILFSFYQNAGIQQAK YVVLAGLAGTVAGIWLARRVTRRLPLLRLSGLLQLLAVIGLHAQVWGWSDDAGLVTAAALAAGFFIFLPITSLVTLAQEQ PGMTPDKAAVTFSLFWFLSYLLATVAPYLFGKLVDLRGGDYGLAMAFATLLSSTFLLGSLLMRETREPAARQAAQGA >Mature_397_residues MKTNKYLIEALLFSSYVLFGMSWAGGSAFIPQIMRELGVHDLAAGSHISNAVAAAKLLGTFVAAGILSRLLAKKAVALAM ALMALGALTPFVHSYPWLLLVRFLMGLGGALVIVYFSPIVMQWFAPSERPFVNGLNSVAFNIGTAAILFGLPAMLGWFQD WQTTLLAISLGSVLCLALWLVFGADGAAEAKQADSGPRHTLWQGLKERFNWLLAFTYSGTLSFYVILFSFYQNAGIQQAK YVVLAGLAGTVAGIWLARRVTRRLPLLRLSGLLQLLAVIGLHAQVWGWSDDAGLVTAAALAAGFFIFLPITSLVTLAQEQ PGMTPDKAAVTFSLFWFLSYLLATVAPYLFGKLVDLRGGDYGLAMAFATLLSSTFLLGSLLMRETREPAARQAAQGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42727; Mature: 42727
Theoretical pI: Translated: 9.98; Mature: 9.98
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTNKYLIEALLFSSYVLFGMSWAGGSAFIPQIMRELGVHDLAAGSHISNAVAAAKLLGT CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHH FVAAGILSRLLAKKAVALAMALMALGALTPFVHSYPWLLLVRFLMGLGGALVIVYFSPIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH MQWFAPSERPFVNGLNSVAFNIGTAAILFGLPAMLGWFQDWQTTLLAISLGSVLCLALWL HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFGADGAAEAKQADSGPRHTLWQGLKERFNWLLAFTYSGTLSFYVILFSFYQNAGIQQAK HHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCHHHH YVVLAGLAGTVAGIWLARRVTRRLPLLRLSGLLQLLAVIGLHAQVWGWSDDAGLVTAAAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AAGFFIFLPITSLVTLAQEQPGMTPDKAAVTFSLFWFLSYLLATVAPYLFGKLVDLRGGD HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YGLAMAFATLLSSTFLLGSLLMRETREPAARQAAQGA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC >Mature Secondary Structure MKTNKYLIEALLFSSYVLFGMSWAGGSAFIPQIMRELGVHDLAAGSHISNAVAAAKLLGT CCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCHHHHHHHHHHHHHH FVAAGILSRLLAKKAVALAMALMALGALTPFVHSYPWLLLVRFLMGLGGALVIVYFSPIV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHH MQWFAPSERPFVNGLNSVAFNIGTAAILFGLPAMLGWFQDWQTTLLAISLGSVLCLALWL HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VFGADGAAEAKQADSGPRHTLWQGLKERFNWLLAFTYSGTLSFYVILFSFYQNAGIQQAK HHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHCCCCHHHH YVVLAGLAGTVAGIWLARRVTRRLPLLRLSGLLQLLAVIGLHAQVWGWSDDAGLVTAAAL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH AAGFFIFLPITSLVTLAQEQPGMTPDKAAVTFSLFWFLSYLLATVAPYLFGKLVDLRGGD HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC YGLAMAFATLLSSTFLLGSLLMRETREPAARQAAQGA HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7730270; 10688204 [H]