| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34498402
Identifier: 34498402
GI number: 34498402
Start: 3226343
End: 3226828
Strand: Direct
Name: 34498402
Synonym: CV_2947
Alternate gene names: NA
Gene position: 3226343-3226828 (Clockwise)
Preceding gene: 34498401
Following gene: 34498404
Centisome position: 67.91
GC content: 64.4
Gene sequence:
>486_bases ATGTCCATCAGCAACACCGATACCTCGAACGCCTATTGGCAACAGCTGCATTCGATGCATCAGCAGCGCCGCCAGGAGTT CAGCAAGCTGACCCAGTCGGTCCAGCAGGGCGACATCGCCGGCGCGCAGCAGGCGCTGGCCGCTTTGCAGCAGCTGAAAG GAAGCGCCGGCTCCGGCAGCGACCCCGATTTCAGCGCCATGCTGAACCATGCCGTCAACGCGGCCTCCGCCAGCTCGAGC GACCCCTACGCCGCGTTGAACGACGCCCAGACAACTTCCGGCTCCTCCAGCAGCGTGTCTTCTCTGCTGAATGCCTTGGG ACAGGATTTGCAAGCCGGCAATCTGAGCCAGGCCCAGCAAGCTTTCCAGCAACTGCAGCAGGGCCTGCAGCAAGCCGACG CCAGCCAAGCGGCCGCCATCACCTCCATCATCACCATGGCGGCCAGCAGCAGAGCGGCCAGACCGACAGCCTGGCCAGCC TGCTGA
Upstream 100 bases:
>100_bases TGCCGGCCGGATGGGAGCCTGGCTCCAGCCGGCTGCCGCCAAGGACCGCAGCGGATCCGTGAAACGCTGCCCGGCAACAT CGTTTTCAAGGAGAGGCACC
Downstream 100 bases:
>100_bases ACGCCGTCAACGGCAACGGCGCCGCCTCCGGCAGCAGCGCCCTCTCTTCCCTCAACCAACAGCAAACCCAGGCAGCGCTC AGCCTGTTCCAGGCCAATGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MSISNTDTSNAYWQQLHSMHQQRRQEFSKLTQSVQQGDIAGAQQALAALQQLKGSAGSGSDPDFSAMLNHAVNAASASSS DPYAALNDAQTTSGSSSSVSSLLNALGQDLQAGNLSQAQQAFQQLQQGLQQADASQAAAITSIITMAASSRAARPTAWPA C
Sequences:
>Translated_161_residues MSISNTDTSNAYWQQLHSMHQQRRQEFSKLTQSVQQGDIAGAQQALAALQQLKGSAGSGSDPDFSAMLNHAVNAASASSS DPYAALNDAQTTSGSSSSVSSLLNALGQDLQAGNLSQAQQAFQQLQQGLQQADASQAAAITSIITMAASSRAARPTAWPA C >Mature_160_residues SISNTDTSNAYWQQLHSMHQQRRQEFSKLTQSVQQGDIAGAQQALAALQQLKGSAGSGSDPDFSAMLNHAVNAASASSSD PYAALNDAQTTSGSSSSVSSLLNALGQDLQAGNLSQAQQAFQQLQQGLQQADASQAAAITSIITMAASSRAARPTAWPAC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16685; Mature: 16554
Theoretical pI: Translated: 5.47; Mature: 5.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSISNTDTSNAYWQQLHSMHQQRRQEFSKLTQSVQQGDIAGAQQALAALQQLKGSAGSGS CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC DPDFSAMLNHAVNAASASSSDPYAALNDAQTTSGSSSSVSSLLNALGQDLQAGNLSQAQQ CCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH AFQQLQQGLQQADASQAAAITSIITMAASSRAARPTAWPAC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SISNTDTSNAYWQQLHSMHQQRRQEFSKLTQSVQQGDIAGAQQALAALQQLKGSAGSGS CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCC DPDFSAMLNHAVNAASASSSDPYAALNDAQTTSGSSSSVSSLLNALGQDLQAGNLSQAQQ CCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH AFQQLQQGLQQADASQAAAITSIITMAASSRAARPTAWPAC HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA