| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498400
Identifier: 34498400
GI number: 34498400
Start: 3223667
End: 3225472
Strand: Direct
Name: 34498400
Synonym: CV_2945
Alternate gene names: NA
Gene position: 3223667-3225472 (Clockwise)
Preceding gene: 34498399
Following gene: 34498401
Centisome position: 67.85
GC content: 69.38
Gene sequence:
>1806_bases ATGAGCCGTTTCGACCTCAGCCAGCCGCCGTTCGACAACCTCACGCCCGCCGAGCGCGACGCGCTGGAGGCCCGCGCCGA CATCGTCTACTTTCCCGACGACGCGCAGATCATCGGGCCCGGCCAGCCGATCGACGCGCTTTACATGGTGATCAAGGGCG TGGTGCGCGAGCTTGCCGACGATGAAACGCTGGGCCGCTGCCACGTCCGCGACGTTTTCGACGCCCGCGCGCTGGTGGCC GGCCGCGCCTCCAGCCGCTTCGTCGCCGAAGAGGAGGCGCTGCTGCTGGCGCTGCCGCGCGAGGCGGTGCTGGCGCTGAC CGGCAGCAATCCCCGCTTCGGCGCCTATTTCTACGCCGGCGTCGCCGAGAAGATGGGCCTGCTCGCCCAGCGCGCGGGCG CCCGGGAGCTGCAAACCCTGCTGTCCGCCACCGTCCGCGACGTCGGCTGCCGCCAGCCGGTTTTCGTCGACGCCTCCGAC AGCATCCGCGACGCGGCCCGCGCGATGAAGGAACAGCGCAGCAAGTCGGTGCTGGTGCGCGGAGACGGAAAGCTGGGCAT CTTCACCACCACCGACTGCCGCGACGTGATCCTGGACGGCGTGGACAGCGCGGAAGCGGTGGGCCGGCACTGCAGCTACC AATTGCTGTGCGTGGAGCGGGACGATTTCCTGTTCAACGCGCTGCTGCTGATGACCCAGCGCAATCTGCGCCGCCTGGTG GTGACCGAGAACGGCGAGGCGGTGGGCATCCTGGCCCAGGTGGACGTGCTGTCCTATTTTTCCAACCACTCGCACCTGAT CGCGCAGCGGCTGGATCGCGCCGCCGATCTGGACGAACTGGCCGCCGTGGCCGGCCAGATCGACCGGCTGGTCCGCATCC TGTCGGGCCACGGCGTGCGCCCGCAGCAGCTCGGCCGGCTGGTGCAAGCGCTGAATGCCCGGTTGTTCGCGCGCGCCTGG CGCATGATCGCGCCGTCTCGGCTGGCCGAAACCAGCTGCCTGCTGGTGATGGGATCGGAAGGCCGCGGCGAGCAGATACT GAAGACCGACCAGGACAACGCGTTGCTGCTGCCCGACGGGGAAGACTTCCCCGAGGCCGCGGCCTGCTGCGAGGCTTTCT CCGCCGCCCTCTCCCGCTTCGGCTATCCGCCCTGCCCCGGCGGCGTGATGGTCAGCAACCCGCATTGGCGCCTGACCCGC TCGGAAATGCGCGATCGCATCCACCACTGGCTGACCCGTCCCGACGGCGAGGGCATGATGCGGCTGGCGATTTTCTGCGA CGCGGAGTCCGTCTGCGGCGACGCCTCCCTGCTGGCGGATTGCCGCGGCTACCTGCAGGCGAAGCTGCAGGACGACGCGG GCTTTTTCTCCCGCTTCGCCCGCGCCGTCGAGCAATTCGATACGCCGCTGGGGCCGTTCTCGCGCCTGCGGACCCGGGAG CGGGACGGACGGGAGCTGCTGGATCTGAAAAAAGGCGGCATTTTCCCGCTGGTGCACGGGCTGCGGGCGCTGGCGCTGGA AAACGGCATCGCCGCTCCGTCCAGCGCGGATCGCGCCCGGCTGCTCGCCGCCGCAGGCAAGCTGGAAGCCGGGCTCGCCG ACGACATCCAGGAAGCGCTGGCCTTCCTGTCCCAGCTCCGGCTGGAGCATGGCCTGAGGCGGCTGGATGCCGGCCAGTCG CCCGATAACCTGATCGAGCCGGAAGCGCTGTCCACGCTGGAGCGCGATCTGCTCAAGGACGCGCTGGCGGTGGCAAAGCG CTTCAAGACCCAGTTGCGCCATCATTACCGGCTGGGGAGCTTCTGA
Upstream 100 bases:
>100_bases CCGCGACGGCGCGCCGCTGCTGTCGCGCAAGCCGGCAGCCTGACACCGGAACGGCGATAGGCGTTATGCTGACGGGAACC GCCTTCAGCACGGATACGCC
Downstream 100 bases:
>100_bases TGCTGGCGCGGCTGCGGCGGCGCTGGCTGCTGGCGAGGCTGCGCGACCCGGCATGGGCCGGCCTGCTGGACGAGCACCCC GGCGAAGTGGTGAGCCTGGA
Product: hypothetical protein
Products: NA
Alternate protein names: Signal-Transduction Protein; Nucleotidyltransferase; Signal Transduction Protein; Signal Transduction Protein With CBS Domains; Signal-Transduction Protein With CBS Domains; Nucleotidyltransferase Family; CBS Domain Protein; Signal Protein; Inosine-5-Monophosphate Dehydrogenase; Nucleotidyltransferase Domain Family Protein; DNA Polymerase III Subunit Epsilon; CBS Signal-Transduction Protein; Multidomain-Containing Protein; Cyclic Nucleotide-Regulated Nucleotidyltransferase; Nucleotidyltransferases
Number of amino acids: Translated: 601; Mature: 600
Protein sequence:
>601_residues MSRFDLSQPPFDNLTPAERDALEARADIVYFPDDAQIIGPGQPIDALYMVIKGVVRELADDETLGRCHVRDVFDARALVA GRASSRFVAEEEALLLALPREAVLALTGSNPRFGAYFYAGVAEKMGLLAQRAGARELQTLLSATVRDVGCRQPVFVDASD SIRDAARAMKEQRSKSVLVRGDGKLGIFTTTDCRDVILDGVDSAEAVGRHCSYQLLCVERDDFLFNALLLMTQRNLRRLV VTENGEAVGILAQVDVLSYFSNHSHLIAQRLDRAADLDELAAVAGQIDRLVRILSGHGVRPQQLGRLVQALNARLFARAW RMIAPSRLAETSCLLVMGSEGRGEQILKTDQDNALLLPDGEDFPEAAACCEAFSAALSRFGYPPCPGGVMVSNPHWRLTR SEMRDRIHHWLTRPDGEGMMRLAIFCDAESVCGDASLLADCRGYLQAKLQDDAGFFSRFARAVEQFDTPLGPFSRLRTRE RDGRELLDLKKGGIFPLVHGLRALALENGIAAPSSADRARLLAAAGKLEAGLADDIQEALAFLSQLRLEHGLRRLDAGQS PDNLIEPEALSTLERDLLKDALAVAKRFKTQLRHHYRLGSF
Sequences:
>Translated_601_residues MSRFDLSQPPFDNLTPAERDALEARADIVYFPDDAQIIGPGQPIDALYMVIKGVVRELADDETLGRCHVRDVFDARALVA GRASSRFVAEEEALLLALPREAVLALTGSNPRFGAYFYAGVAEKMGLLAQRAGARELQTLLSATVRDVGCRQPVFVDASD SIRDAARAMKEQRSKSVLVRGDGKLGIFTTTDCRDVILDGVDSAEAVGRHCSYQLLCVERDDFLFNALLLMTQRNLRRLV VTENGEAVGILAQVDVLSYFSNHSHLIAQRLDRAADLDELAAVAGQIDRLVRILSGHGVRPQQLGRLVQALNARLFARAW RMIAPSRLAETSCLLVMGSEGRGEQILKTDQDNALLLPDGEDFPEAAACCEAFSAALSRFGYPPCPGGVMVSNPHWRLTR SEMRDRIHHWLTRPDGEGMMRLAIFCDAESVCGDASLLADCRGYLQAKLQDDAGFFSRFARAVEQFDTPLGPFSRLRTRE RDGRELLDLKKGGIFPLVHGLRALALENGIAAPSSADRARLLAAAGKLEAGLADDIQEALAFLSQLRLEHGLRRLDAGQS PDNLIEPEALSTLERDLLKDALAVAKRFKTQLRHHYRLGSF >Mature_600_residues SRFDLSQPPFDNLTPAERDALEARADIVYFPDDAQIIGPGQPIDALYMVIKGVVRELADDETLGRCHVRDVFDARALVAG RASSRFVAEEEALLLALPREAVLALTGSNPRFGAYFYAGVAEKMGLLAQRAGARELQTLLSATVRDVGCRQPVFVDASDS IRDAARAMKEQRSKSVLVRGDGKLGIFTTTDCRDVILDGVDSAEAVGRHCSYQLLCVERDDFLFNALLLMTQRNLRRLVV TENGEAVGILAQVDVLSYFSNHSHLIAQRLDRAADLDELAAVAGQIDRLVRILSGHGVRPQQLGRLVQALNARLFARAWR MIAPSRLAETSCLLVMGSEGRGEQILKTDQDNALLLPDGEDFPEAAACCEAFSAALSRFGYPPCPGGVMVSNPHWRLTRS EMRDRIHHWLTRPDGEGMMRLAIFCDAESVCGDASLLADCRGYLQAKLQDDAGFFSRFARAVEQFDTPLGPFSRLRTRER DGRELLDLKKGGIFPLVHGLRALALENGIAAPSSADRARLLAAAGKLEAGLADDIQEALAFLSQLRLEHGLRRLDAGQSP DNLIEPEALSTLERDLLKDALAVAKRFKTQLRHHYRLGSF
Specific function: Unknown
COG id: COG2905
COG function: function code T; Predicted signal-transduction protein containing cAMP-binding and CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 66055; Mature: 65924
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRFDLSQPPFDNLTPAERDALEARADIVYFPDDAQIIGPGQPIDALYMVIKGVVRELAD CCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCEEECCCCCHHHHHHHHHHHHHHHCC DETLGRCHVRDVFDARALVAGRASSRFVAEEEALLLALPREAVLALTGSNPRFGAYFYAG CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEECCCEEEEEECCCCCCCHHHHHH VAEKMGLLAQRAGARELQTLLSATVRDVGCRQPVFVDASDSIRDAARAMKEQRSKSVLVR HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCEEEEE GDGKLGIFTTTDCRDVILDGVDSAEAVGRHCSYQLLCVERDDFLFNALLLMTQRNLRRLV CCCCEEEEECCCHHHHHHCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEE VTENGEAVGILAQVDVLSYFSNHSHLIAQRLDRAADLDELAAVAGQIDRLVRILSGHGVR EECCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC PQQLGRLVQALNARLFARAWRMIAPSRLAETSCLLVMGSEGRGEQILKTDQDNALLLPDG HHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCCHHHCCCCCCEEECCCC EDFPEAAACCEAFSAALSRFGYPPCPGGVMVSNPHWRLTRSEMRDRIHHWLTRPDGEGMM CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEECHHHHHHHHHHHHCCCCCCCEE RLAIFCDAESVCGDASLLADCRGYLQAKLQDDAGFFSRFARAVEQFDTPLGPFSRLRTRE EEEEEECCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCC RDGRELLDLKKGGIFPLVHGLRALALENGIAAPSSADRARLLAAAGKLEAGLADDIQEAL CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH AFLSQLRLEHGLRRLDAGQSPDNLIEPEALSTLERDLLKDALAVAKRFKTQLRHHYRLGS HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC F C >Mature Secondary Structure SRFDLSQPPFDNLTPAERDALEARADIVYFPDDAQIIGPGQPIDALYMVIKGVVRELAD CCCCCCCCCCCCCCCCHHHHHHHCCCEEECCCCCEEECCCCCHHHHHHHHHHHHHHHCC DETLGRCHVRDVFDARALVAGRASSRFVAEEEALLLALPREAVLALTGSNPRFGAYFYAG CCCCCCHHHHHHHHHHHHHHCCCCCCCEECCCEEEEEECCCEEEEEECCCCCCCHHHHHH VAEKMGLLAQRAGARELQTLLSATVRDVGCRQPVFVDASDSIRDAARAMKEQRSKSVLVR HHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCEEEEE GDGKLGIFTTTDCRDVILDGVDSAEAVGRHCSYQLLCVERDDFLFNALLLMTQRNLRRLV CCCCEEEEECCCHHHHHHCCCCCHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCEEEE VTENGEAVGILAQVDVLSYFSNHSHLIAQRLDRAADLDELAAVAGQIDRLVRILSGHGVR EECCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCC PQQLGRLVQALNARLFARAWRMIAPSRLAETSCLLVMGSEGRGEQILKTDQDNALLLPDG HHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCCHHHCCCCCCEEECCCC EDFPEAAACCEAFSAALSRFGYPPCPGGVMVSNPHWRLTRSEMRDRIHHWLTRPDGEGMM CCCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCEECHHHHHHHHHHHHCCCCCCCEE RLAIFCDAESVCGDASLLADCRGYLQAKLQDDAGFFSRFARAVEQFDTPLGPFSRLRTRE EEEEEECCHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCC RDGRELLDLKKGGIFPLVHGLRALALENGIAAPSSADRARLLAAAGKLEAGLADDIQEAL CCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHH AFLSQLRLEHGLRRLDAGQSPDNLIEPEALSTLERDLLKDALAVAKRFKTQLRHHYRLGS HHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC F C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA