Click here to switch to the map view.

The map label for this gene is yfcN [C]

Identifier: 34498269

GI number: 34498269

Start: 3065198

End: 3065833

Strand: Direct

Name: yfcN [C]

Synonym: CV_2814

Alternate gene names: 34498269

Gene position: 3065198-3065833 (Clockwise)

Preceding gene: 34498268

Following gene: 34498270

Centisome position: 64.52

GC content: 71.38

Gene sequence:

>636_bases
ATGAAGACCTTCAAGGACACTCTGAAGGGACTTCGCCAGACGCTGCGCCAGGCCGCCCCGCCGCGGGCGGCCGCGCCGCA
GCCCGCAGTGCCCGAGGAAGCGGATTTTCGCCAGTCGGTCGGCGACGTCAAACCGCTGAAGCCGGACGGCCGGCACCACC
CTCAGCCTCCCAAGCCCAGTCCCCGCCCGCGCAAGCCCAGCCAGGGCCCGGCGCTGCACGCGGCCGCCTGCCAGGAAATC
CTGCAGCACCAGATAGGCTGGTTCGAACCCGCGCACCAGGCGCAGCAATACGCCCGCCCCGGCATGCCCGCCGCCACGCT
GAAGCGGCTGCGCCAGGGCAACTGGCCGGTGTGCGCGCAGCTGGACCTGCACGGCTACACCCGCCACCAGGCGCAGGACG
CGCTGGCGCTGTTCATCCACCGCGCCCGCCACCGCGGGCAGTGCGTGAAGGTGATACACGGCAAGGGTTTTGGCTCGCCG
CAAGGCGAGCCGGTGCTGAAGAAGCTGGTGCGCAGCTGGCTGCAGCACCATCCGGACGTGCTGGCCTTTTGCGAGGCGGA
AACCGGCGGCGCCGCCGGCTCGCTGCTGGTGCTTTTGCGCCGCCCTCCGGCCGGAGAGCCCCGCGACGAAGGATAA

Upstream 100 bases:

>100_bases
TACCGCCAGGCCGTGACCAGCGCCGCCTCCGGCTGCCAGGCCGCCCTGGACGCCGAGCGCTACCTCGACAGCCTGAAGTA
AGCGCCGGAAGTCCTGCATC

Downstream 100 bases:

>100_bases
CGTGACAACCGCAATGATAATCCGCTAAGCTCAAAACAAGGCGGACCCCTGCACACTACCAGGAGTTATGCATGACAGGC
ACACCCTGCCCCGACTTCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MKTFKDTLKGLRQTLRQAAPPRAAAPQPAVPEEADFRQSVGDVKPLKPDGRHHPQPPKPSPRPRKPSQGPALHAAACQEI
LQHQIGWFEPAHQAQQYARPGMPAATLKRLRQGNWPVCAQLDLHGYTRHQAQDALALFIHRARHRGQCVKVIHGKGFGSP
QGEPVLKKLVRSWLQHHPDVLAFCEAETGGAAGSLLVLLRRPPAGEPRDEG

Sequences:

>Translated_211_residues
MKTFKDTLKGLRQTLRQAAPPRAAAPQPAVPEEADFRQSVGDVKPLKPDGRHHPQPPKPSPRPRKPSQGPALHAAACQEI
LQHQIGWFEPAHQAQQYARPGMPAATLKRLRQGNWPVCAQLDLHGYTRHQAQDALALFIHRARHRGQCVKVIHGKGFGSP
QGEPVLKKLVRSWLQHHPDVLAFCEAETGGAAGSLLVLLRRPPAGEPRDEG
>Mature_211_residues
MKTFKDTLKGLRQTLRQAAPPRAAAPQPAVPEEADFRQSVGDVKPLKPDGRHHPQPPKPSPRPRKPSQGPALHAAACQEI
LQHQIGWFEPAHQAQQYARPGMPAATLKRLRQGNWPVCAQLDLHGYTRHQAQDALALFIHRARHRGQCVKVIHGKGFGSP
QGEPVLKKLVRSWLQHHPDVLAFCEAETGGAAGSLLVLLRRPPAGEPRDEG

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1788671, Length=178, Percent_Identity=33.1460674157303, Blast_Score=60, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625
- InterPro:   IPR022990 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 23227; Mature: 23227

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTFKDTLKGLRQTLRQAAPPRAAAPQPAVPEEADFRQSVGDVKPLKPDGRHHPQPPKPS
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PRPRKPSQGPALHAAACQEILQHQIGWFEPAHQAQQYARPGMPAATLKRLRQGNWPVCAQ
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEE
LDLHGYTRHQAQDALALFIHRARHRGQCVKVIHGKGFGSPQGEPVLKKLVRSWLQHHPDV
ECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCE
LAFCEAETGGAAGSLLVLLRRPPAGEPRDEG
EEEECCCCCCCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure
MKTFKDTLKGLRQTLRQAAPPRAAAPQPAVPEEADFRQSVGDVKPLKPDGRHHPQPPKPS
CCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
PRPRKPSQGPALHAAACQEILQHQIGWFEPAHQAQQYARPGMPAATLKRLRQGNWPVCAQ
CCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEE
LDLHGYTRHQAQDALALFIHRARHRGQCVKVIHGKGFGSPQGEPVLKKLVRSWLQHHPDV
ECCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCE
LAFCEAETGGAAGSLLVLLRRPPAGEPRDEG
EEEECCCCCCCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA