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The map label for this gene is ypdF [C]

Identifier: 34498251

GI number: 34498251

Start: 3029328

End: 3031112

Strand: Direct

Name: ypdF [C]

Synonym: CV_2796

Alternate gene names: 34498251

Gene position: 3029328-3031112 (Clockwise)

Preceding gene: 34498250

Following gene: 34498252

Centisome position: 63.76

GC content: 69.52

Gene sequence:

>1785_bases
CTGGACACCATTCCGCAACGCATCGCCTCGCTGCGCGCCGCGATGAAGAACGCCGGCGCCGACGCCTGTCTGGTGCCCTC
GTCCGACCCGCACATTTCCGAATACCTGCCCCAGCGCTGGCAGGCGCGCCAGTGGCTGTCGGGTTTCACCGGATCGATGG
GCACGCTGATCGTCGGCGCCGACTTCGCCGGCCTGTGGGCCGACAGCCGCTACTGGGTTCAGGCCGAGCAGGAACTGGCC
GGCACTGGCATCCAGCTGATGAAGATAGACACCGCCGCCAGCAGCCTGCACCTGCAATGGCTGGCCGACAATCTGCGAAC
CGGCCAGACGCTGGCGGTGGACGGCGACGTGCTGGGCCTGGCCGCCGCCAAGGCCTTGCAAGCGGCGCTGGAGCCGCGCG
GCGTCATCGTGCGCGCCGATCTGGATCTGATAGACGCGGTCTATGCCGGCCGGCCGGCGCTGCCCGCCGCCGCCGTCTAC
CAGCATGACGGCGACTACGCGCCGGAAAGCCGCGCCGCCAAGCTCGCCCGCGTGCGCGAAGCGATGCGCGAGGCCGGCGC
GGACCGCCACTTCATCTCCACGCTGGACGACATCGCCTGGCTGTTCAATCTGCGCGGCGCCGACGTCAGCTACAACCCGG
TATTCATCGCCCACGCCTTGATCGAGACAGACAACGCCACGCTGTTCGTCGCGCCGGGCAAGATAGACGCCGCCCTCGCC
GCCCAGCTGGCCGCCGACGGCGTCCGGATCGCGGATTACGCGGCCGCCAAACCTGCGCTGTCGGCGCTGCCCGGCGGCGC
GCTGCTGATCGACCCGCGCCGCGTCACGCTGGGCCTGCGCCGGGCGGTGGCCGACCGCGTGCGAGTGATCGAGGCGATCA
ATCCCAGCACGCTGATGAAGTCGCGCAAGAGCGCGGCCGAGGCCGAGCACGTGCGCCGCGCGATGGAACAGGACGGCGCC
GCGCTGGCCGAGTTCTTCGCCTGGTTCGAGGCCAACGTCAACCGCGCCCGCATCACCGAATTGACCATAGACGACGAGAT
CACCGCCGCCCGCGCGCGCCGCCCCGGCTTCGTCTCGCCCAGCTTCGGCACCATCGCCGGCTTCAACGCCAACGGCGCGC
TGCCGCACTATCACGCCACTCCGGAAGCGCACAGCGAGATCCAGGGCGATGGCCTGCTGCTGATCGACTCCGGCGGCCAA
TACCTGGGCGGCACCACCGACATCACCCGCGTGGTGGCCGTCGGCACGCCCAGCGCCGCTCAGAAGCGCGACTTCACCCT
GGTGCTGAAGGGCACGATGGCACTGTCGATGGCCCATTTCCCGCGCGGCACGCTGTCGCCGATGCTGGACGCGCTGGCCC
GCGCGCCCTTGTGGCAGCACGACATCGATTTCGGCCACGGCACCGGCCACGGCGTCGGCTATTTCCTCAATGTGCACGAA
GGCCCGCAAAGCATCTCGCGCGCGGTGCCGGAGCCGCACATGGCGATGCAGGAAGGCATGATCACCTCGATCGAGCCGGG
CGTGTACCGCGCCGGCCAATGGGGCGTGCGCATCGAGAACCTGGTGCTGAACGTGGCCTCGGAACGGAACCAGTTCGGCG
ACTTCCTGAAGTTCGAGACGCTGACGCTGTGTCCGATAGACCGGCGCTGCATCGACCTCTCCCTGCTCACCCAGCCGGAA
ATCGCCTGGCTGAACGGCTATCACGCCGAGGTGCGCGCGCGGCTGCTGCCGCTGGTGGACGGCGCGGCGCGCGACTGGCT
GCTGGCCAACACCGAAACGCTGTAA

Upstream 100 bases:

>100_bases
CATGAGCCGCGCTCATCCACTTGCGCGGCTTTTCCTTTGCTTACAGAATGCATGCAAACACCCAACCGGAGCCGGCATGA
ACACCGTAGCAACCCCGCAA

Downstream 100 bases:

>100_bases
ACTCAGGCGATACCCGTCGACAGGCCATGCCGCTGCGGCATGGCCTGTTTCGTTTTGCAAGGAATGACCGATGCCGTTCG
ACCGTCTGGCCGACCTGCGC

Product: peptidase, M24 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 594; Mature: 594

Protein sequence:

>594_residues
MDTIPQRIASLRAAMKNAGADACLVPSSDPHISEYLPQRWQARQWLSGFTGSMGTLIVGADFAGLWADSRYWVQAEQELA
GTGIQLMKIDTAASSLHLQWLADNLRTGQTLAVDGDVLGLAAAKALQAALEPRGVIVRADLDLIDAVYAGRPALPAAAVY
QHDGDYAPESRAAKLARVREAMREAGADRHFISTLDDIAWLFNLRGADVSYNPVFIAHALIETDNATLFVAPGKIDAALA
AQLAADGVRIADYAAAKPALSALPGGALLIDPRRVTLGLRRAVADRVRVIEAINPSTLMKSRKSAAEAEHVRRAMEQDGA
ALAEFFAWFEANVNRARITELTIDDEITAARARRPGFVSPSFGTIAGFNANGALPHYHATPEAHSEIQGDGLLLIDSGGQ
YLGGTTDITRVVAVGTPSAAQKRDFTLVLKGTMALSMAHFPRGTLSPMLDALARAPLWQHDIDFGHGTGHGVGYFLNVHE
GPQSISRAVPEPHMAMQEGMITSIEPGVYRAGQWGVRIENLVLNVASERNQFGDFLKFETLTLCPIDRRCIDLSLLTQPE
IAWLNGYHAEVRARLLPLVDGAARDWLLANTETL

Sequences:

>Translated_594_residues
MDTIPQRIASLRAAMKNAGADACLVPSSDPHISEYLPQRWQARQWLSGFTGSMGTLIVGADFAGLWADSRYWVQAEQELA
GTGIQLMKIDTAASSLHLQWLADNLRTGQTLAVDGDVLGLAAAKALQAALEPRGVIVRADLDLIDAVYAGRPALPAAAVY
QHDGDYAPESRAAKLARVREAMREAGADRHFISTLDDIAWLFNLRGADVSYNPVFIAHALIETDNATLFVAPGKIDAALA
AQLAADGVRIADYAAAKPALSALPGGALLIDPRRVTLGLRRAVADRVRVIEAINPSTLMKSRKSAAEAEHVRRAMEQDGA
ALAEFFAWFEANVNRARITELTIDDEITAARARRPGFVSPSFGTIAGFNANGALPHYHATPEAHSEIQGDGLLLIDSGGQ
YLGGTTDITRVVAVGTPSAAQKRDFTLVLKGTMALSMAHFPRGTLSPMLDALARAPLWQHDIDFGHGTGHGVGYFLNVHE
GPQSISRAVPEPHMAMQEGMITSIEPGVYRAGQWGVRIENLVLNVASERNQFGDFLKFETLTLCPIDRRCIDLSLLTQPE
IAWLNGYHAEVRARLLPLVDGAARDWLLANTETL
>Mature_594_residues
MDTIPQRIASLRAAMKNAGADACLVPSSDPHISEYLPQRWQARQWLSGFTGSMGTLIVGADFAGLWADSRYWVQAEQELA
GTGIQLMKIDTAASSLHLQWLADNLRTGQTLAVDGDVLGLAAAKALQAALEPRGVIVRADLDLIDAVYAGRPALPAAAVY
QHDGDYAPESRAAKLARVREAMREAGADRHFISTLDDIAWLFNLRGADVSYNPVFIAHALIETDNATLFVAPGKIDAALA
AQLAADGVRIADYAAAKPALSALPGGALLIDPRRVTLGLRRAVADRVRVIEAINPSTLMKSRKSAAEAEHVRRAMEQDGA
ALAEFFAWFEANVNRARITELTIDDEITAARARRPGFVSPSFGTIAGFNANGALPHYHATPEAHSEIQGDGLLLIDSGGQ
YLGGTTDITRVVAVGTPSAAQKRDFTLVLKGTMALSMAHFPRGTLSPMLDALARAPLWQHDIDFGHGTGHGVGYFLNVHE
GPQSISRAVPEPHMAMQEGMITSIEPGVYRAGQWGVRIENLVLNVASERNQFGDFLKFETLTLCPIDRRCIDLSLLTQPE
IAWLNGYHAEVRARLLPLVDGAARDWLLANTETL

Specific function: Unknown

COG id: COG0006

COG function: function code E; Xaa-Pro aminopeptidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M24B family [H]

Homologues:

Organism=Homo sapiens, GI264681563, Length=623, Percent_Identity=35.9550561797753, Blast_Score=355, Evalue=7e-98,
Organism=Homo sapiens, GI93141226, Length=602, Percent_Identity=32.0598006644518, Blast_Score=331, Evalue=9e-91,
Organism=Homo sapiens, GI264681565, Length=623, Percent_Identity=34.3499197431782, Blast_Score=323, Evalue=3e-88,
Organism=Escherichia coli, GI1788728, Length=178, Percent_Identity=32.5842696629214, Blast_Score=77, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17509539, Length=565, Percent_Identity=34.1592920353982, Blast_Score=291, Evalue=9e-79,
Organism=Caenorhabditis elegans, GI25149105, Length=587, Percent_Identity=27.427597955707, Blast_Score=228, Evalue=9e-60,
Organism=Saccharomyces cerevisiae, GI6322999, Length=633, Percent_Identity=29.8578199052133, Blast_Score=270, Evalue=4e-73,
Organism=Drosophila melanogaster, GI17137632, Length=591, Percent_Identity=33.8409475465313, Blast_Score=311, Evalue=8e-85,
Organism=Drosophila melanogaster, GI161078230, Length=579, Percent_Identity=28.6701208981002, Blast_Score=243, Evalue=2e-64,
Organism=Drosophila melanogaster, GI21357287, Length=579, Percent_Identity=28.6701208981002, Blast_Score=243, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000587
- InterPro:   IPR001714
- InterPro:   IPR000994
- InterPro:   IPR001131 [H]

Pfam domain/function: PF01321 Creatinase_N; PF00557 Peptidase_M24 [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 64061; Mature: 64061

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTIPQRIASLRAAMKNAGADACLVPSSDPHISEYLPQRWQARQWLSGFTGSMGTLIVGA
CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
DFAGLWADSRYWVQAEQELAGTGIQLMKIDTAASSLHLQWLADNLRTGQTLAVDGDVLGL
CCHHHCCCCEEEEEEHHHHCCCCEEEEEEECCCHHEEHHHHHHCCCCCCEEEECCCHHHH
AAAKALQAALEPRGVIVRADLDLIDAVYAGRPALPAAAVYQHDGDYAPESRAAKLARVRE
HHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHH
AMREAGADRHFISTLDDIAWLFNLRGADVSYNPVFIAHALIETDNATLFVAPGKIDAALA
HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCHHHHH
AQLAADGVRIADYAAAKPALSALPGGALLIDPRRVTLGLRRAVADRVRVIEAINPSTLMK
HHHHHCCEEEEHHHHCCCHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SRKSAAEAEHVRRAMEQDGAALAEFFAWFEANVNRARITELTIDDEITAARARRPGFVSP
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHCCCCCCCCC
SFGTIAGFNANGALPHYHATPEAHSEIQGDGLLLIDSGGQYLGGTTDITRVVAVGTPSAA
CCCCEEECCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCC
QKRDFTLVLKGTMALSMAHFPRGTLSPMLDALARAPLWQHDIDFGHGTGHGVGYFLNVHE
CCCCEEEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC
GPQSISRAVPEPHMAMQEGMITSIEPGVYRAGQWGVRIENLVLNVASERNQFGDFLKFET
CHHHHHHCCCCCHHHHHCCCCEECCCCCEECCCCCCEEEHHHHHHHHHHHHHHHHHEECE
LTLCPIDRRCIDLSLLTQPEIAWLNGYHAEVRARLLPLVDGAARDWLLANTETL
EEECCCCCCEEEEEEECCCCEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCC
>Mature Secondary Structure
MDTIPQRIASLRAAMKNAGADACLVPSSDPHISEYLPQRWQARQWLSGFTGSMGTLIVGA
CCCHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEC
DFAGLWADSRYWVQAEQELAGTGIQLMKIDTAASSLHLQWLADNLRTGQTLAVDGDVLGL
CCHHHCCCCEEEEEEHHHHCCCCEEEEEEECCCHHEEHHHHHHCCCCCCEEEECCCHHHH
AAAKALQAALEPRGVIVRADLDLIDAVYAGRPALPAAAVYQHDGDYAPESRAAKLARVRE
HHHHHHHHHCCCCCEEEEECHHHHHHHHCCCCCCCHHHHEECCCCCCCHHHHHHHHHHHH
AMREAGADRHFISTLDDIAWLFNLRGADVSYNPVFIAHALIETDNATLFVAPGKIDAALA
HHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCCEEEEECCCCHHHHH
AQLAADGVRIADYAAAKPALSALPGGALLIDPRRVTLGLRRAVADRVRVIEAINPSTLMK
HHHHHCCEEEEHHHHCCCHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCHHHHHH
SRKSAAEAEHVRRAMEQDGAALAEFFAWFEANVNRARITELTIDDEITAARARRPGFVSP
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHCCCCCCCCC
SFGTIAGFNANGALPHYHATPEAHSEIQGDGLLLIDSGGQYLGGTTDITRVVAVGTPSAA
CCCCEEECCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCC
QKRDFTLVLKGTMALSMAHFPRGTLSPMLDALARAPLWQHDIDFGHGTGHGVGYFLNVHE
CCCCEEEEEECHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECC
GPQSISRAVPEPHMAMQEGMITSIEPGVYRAGQWGVRIENLVLNVASERNQFGDFLKFET
CHHHHHHCCCCCHHHHHCCCCEECCCCCEECCCCCCEEEHHHHHHHHHHHHHHHHHEECE
LTLCPIDRRCIDLSLLTQPEIAWLNGYHAEVRARLLPLVDGAARDWLLANTETL
EEECCCCCCEEEEEEECCCCEEEECCCHHHHHHHHHHHHCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]