| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is 34498209
Identifier: 34498209
GI number: 34498209
Start: 2990584
End: 2991321
Strand: Direct
Name: 34498209
Synonym: CV_2754
Alternate gene names: NA
Gene position: 2990584-2991321 (Clockwise)
Preceding gene: 34498205
Following gene: 34498210
Centisome position: 62.95
GC content: 66.12
Gene sequence:
>738_bases ATGGACTCGCCGCGCAGTTTCGCCGTCGGCATGCTATCCCGCCCGTTGAGCCTGCGCATCGATCCCGGCACGGTGTTTGT CAGCGCGCCACTGTGCATCGGCCAGCTGCAAACCATATTCGGCATTGCCAGCCATGAACTGACCGACCGGATCTGGCCGC TGGAGGCGCTGATCGGCCGGGAGGAAGAGGAAAAGCTGTTCGACAGCCTGCGCCTGCGCGATGGCCCCGCGCAGTGGATG GAGGCGATGTCGTCGTGGATGATGGGCCGGCTGGCGCGGCGGGAAGCGCGCAGCGGCCTGGACGACTGGCGACTACCAGC CGCTTCCCTGTTTCTGGATGGCCTCACGCTGGCGGAACAGTCTGGCCTGAGCGTGCGCCAATTCGAGCGGCGCTTCCTCG CCCGCTACGGCCAGCCTCTGCGCGACATGCGCCGCATGGCGCGTTTCATGCGGGCGATGAGCGAAATGATCCTGGACCGG GCAGGCTCTCTGGCCGATCTGGCGCAAGCGTGCGGCTACTTCGACCAGGCGCACCTGAGCCGCGATTTCAAGCTGCTGTC CGGCTTCACGCCCCGCGAGTTCGCGCTGGGCCTCCACGCTGCTCAACGCTCCGAACTGGATCTGCTGCGCTACGACGCGC GCGAGAAACGGCTGGTGATGGACAGCGTGGACGCCGGTCTGCGGGAAATGCGGGTAGAAGACACAGGGGATGTCGTCTCG GTGCAAGACGCCTTCTGA
Upstream 100 bases:
>100_bases GGATGCCGACGGTGGCGTGCTGCGGATGCCCGCCATGCCTTTTCCCTACATCGGCGCATTGCTGGACGGCACCACACATG CCGAACGCGGCGAGGAACGC
Downstream 100 bases:
>100_bases GCAAGTGGCGCAGCATGGGTCCGTTGCGTAATGGAGACCTTAGATGGACAGCCCCTCCCTGGAAAAAGACGGATTCCTGC TCACCACCCTAGACGGCCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 245
Protein sequence:
>245_residues MDSPRSFAVGMLSRPLSLRIDPGTVFVSAPLCIGQLQTIFGIASHELTDRIWPLEALIGREEEEKLFDSLRLRDGPAQWM EAMSSWMMGRLARREARSGLDDWRLPAASLFLDGLTLAEQSGLSVRQFERRFLARYGQPLRDMRRMARFMRAMSEMILDR AGSLADLAQACGYFDQAHLSRDFKLLSGFTPREFALGLHAAQRSELDLLRYDAREKRLVMDSVDAGLREMRVEDTGDVVS VQDAF
Sequences:
>Translated_245_residues MDSPRSFAVGMLSRPLSLRIDPGTVFVSAPLCIGQLQTIFGIASHELTDRIWPLEALIGREEEEKLFDSLRLRDGPAQWM EAMSSWMMGRLARREARSGLDDWRLPAASLFLDGLTLAEQSGLSVRQFERRFLARYGQPLRDMRRMARFMRAMSEMILDR AGSLADLAQACGYFDQAHLSRDFKLLSGFTPREFALGLHAAQRSELDLLRYDAREKRLVMDSVDAGLREMRVEDTGDVVS VQDAF >Mature_245_residues MDSPRSFAVGMLSRPLSLRIDPGTVFVSAPLCIGQLQTIFGIASHELTDRIWPLEALIGREEEEKLFDSLRLRDGPAQWM EAMSSWMMGRLARREARSGLDDWRLPAASLFLDGLTLAEQSGLSVRQFERRFLARYGQPLRDMRRMARFMRAMSEMILDR AGSLADLAQACGYFDQAHLSRDFKLLSGFTPREFALGLHAAQRSELDLLRYDAREKRLVMDSVDAGLREMRVEDTGDVVS VQDAF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27808; Mature: 27808
Theoretical pI: Translated: 5.83; Mature: 5.83
Prosite motif: PS01124 HTH_ARAC_FAMILY_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDSPRSFAVGMLSRPLSLRIDPGTVFVSAPLCIGQLQTIFGIASHELTDRIWPLEALIGR CCCCHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EEEEKLFDSLRLRDGPAQWMEAMSSWMMGRLARREARSGLDDWRLPAASLFLDGLTLAEQ CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHH SGLSVRQFERRFLARYGQPLRDMRRMARFMRAMSEMILDRAGSLADLAQACGYFDQAHLS CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH RDFKLLSGFTPREFALGLHAAQRSELDLLRYDAREKRLVMDSVDAGLREMRVEDTGDVVS HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEE VQDAF CCCCC >Mature Secondary Structure MDSPRSFAVGMLSRPLSLRIDPGTVFVSAPLCIGQLQTIFGIASHELTDRIWPLEALIGR CCCCHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EEEEKLFDSLRLRDGPAQWMEAMSSWMMGRLARREARSGLDDWRLPAASLFLDGLTLAEQ CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCHHHHHHHHHHHHHHH SGLSVRQFERRFLARYGQPLRDMRRMARFMRAMSEMILDRAGSLADLAQACGYFDQAHLS CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHH RDFKLLSGFTPREFALGLHAAQRSELDLLRYDAREKRLVMDSVDAGLREMRVEDTGDVVS HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCEEE VQDAF CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA