| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34498171
Identifier: 34498171
GI number: 34498171
Start: 2941036
End: 2942553
Strand: Direct
Name: 34498171
Synonym: CV_2716
Alternate gene names: NA
Gene position: 2941036-2942553 (Clockwise)
Preceding gene: 34498167
Following gene: 34498172
Centisome position: 61.9
GC content: 61.4
Gene sequence:
>1518_bases ATGTTTGACTTCAAATCTCTAGTCAGCTCACTTCTCAGCAAAAACACGCCGGCCTCCGGCGTGGCGCAATCCGCAACCCT GCTGGTACGCGATCTGCCGCAGGCTGAATACTTTACCGCCTTGGTGGAAATCATCAAGGCCGTATCCAAGATCAACGCGG ATACCGAGATGTCGTTGAAGGAGCGCGTCAAGACGCTGCTCTACGTCGACGACAAGGCCGCAGGCATCCATCACCAGCTG TGCCAGGATTATCTCCATTCCAAGGGCGGCAGCAAAGGCTACCTGCCCACCATTCTCGCGTACTGGCATGAATTGGCCAG CGCCTACCAGATCTGCCTGCGGATGCATCGGGGCTCGCCCAATCAGGCGGGGGAAACGGAACTGCAACTGGTGGCCACGC GAGGGCTGCATCATCAGATGCGCTTGCTGGCCTGGAACGCGCTGCGCTACCTGAAGCCGGAAGGCAACGCCTGGCAGCAA GGCTTTCGCTTCTACACCTATGCCGAGGACGCGGGCTTCGCCCGCTCATCCATCCTGCTGTATCCGGACTCCCGCCAGGA GGTCAGCTGCGAGCACCTGCTGATCCAGGCCGGCATGCTGCATCTGGCCCAGACCGAGAACATGCTGCACAAGGAAATCG TCGCGGTGGACCAGCTGCTGATGCTGCTCTGCCAGCACATACCGCTGGACAAGCAGCCTCCGGCCGAAACGCCGATTTTC GTCTACAACCTGTCGATGCCCGAGCCGCCGCAACCGATGCTGCGCGGCATGGCCGGCAAGTGGCATCGATACTGGTCTTC CTACGAAATCACCACTCGCCTCGCCGACCTGATGTTCGACCTCGACAACCGCATCCCCTCACAGATCGCCGCCCTGGGCT GCGAACTGGAACGCGAGGAGTGGTCGGCGCTGTGCGAGAAGCTGGCGGTGCGCTGGTCCAACGACGGCGGCAAATCGCTG CGCAAGTCGGAGCGCTCGCTGCATTCGTCCAGCGCCCAGGTATCGATAGGCTTCGAGCGGGTGGCCTTCCACATCAAGGT GCAGGATGTAGGCGGGCTGGAAAACGACCGCGCCGACGAGTGGCGGATCAACGACATCAGCAGCACCGGCATGGGGCTCA CCTTTGTCGGCAAGACCATAGACCAGTTGGCGATAGGCCGGCTGATCCTGATCAAGACCGAGACCCATCCCCTGCTCCTT GGCGTGATACGGCGCATCCTGCGGCAGAACAACGGCACCAAGGTGGGCATCGAGATACTGGGCCAGACGCCCGTCGGCGT CTCCCTGCTCGACCCTGCCCAGCCGGACAGTCCGCCCTTCTCCGCGATCTACATCACGCAACCCAACTCGCGCAAGGGCC AGCGCTGGTTCCTGATGCCCAAGACCCTGCTGGCGGGCGACAAGCAACTGGTGCTGAGCGCGCAAGGCAAATCCTACCAG ATCAAACTCAAAGACCCTCAGCAAGAGTTCGAAGACTGCAGCCACAGCAACTTCGACACCCTGTCCAAGATGGACTGA
Upstream 100 bases:
>100_bases GATAAATTTGCGATTATGGTTTCACCAGCATCAATGCGTGACGTAAGATAGAGTGACATATAAGTGAGAACATAAATCCC ATATCTCGAAGCCCGGTTCA
Downstream 100 bases:
>100_bases TCCAGACGCCGGTTCCCCGCGAACCGGCGGCTTTTCCTCCGCGCAGCCAAACAGTCGCCGCCCTATCCCTGATACAGGGA ACTGCAAATTCTTGCGCGCG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 505; Mature: 505
Protein sequence:
>505_residues MFDFKSLVSSLLSKNTPASGVAQSATLLVRDLPQAEYFTALVEIIKAVSKINADTEMSLKERVKTLLYVDDKAAGIHHQL CQDYLHSKGGSKGYLPTILAYWHELASAYQICLRMHRGSPNQAGETELQLVATRGLHHQMRLLAWNALRYLKPEGNAWQQ GFRFYTYAEDAGFARSSILLYPDSRQEVSCEHLLIQAGMLHLAQTENMLHKEIVAVDQLLMLLCQHIPLDKQPPAETPIF VYNLSMPEPPQPMLRGMAGKWHRYWSSYEITTRLADLMFDLDNRIPSQIAALGCELEREEWSALCEKLAVRWSNDGGKSL RKSERSLHSSSAQVSIGFERVAFHIKVQDVGGLENDRADEWRINDISSTGMGLTFVGKTIDQLAIGRLILIKTETHPLLL GVIRRILRQNNGTKVGIEILGQTPVGVSLLDPAQPDSPPFSAIYITQPNSRKGQRWFLMPKTLLAGDKQLVLSAQGKSYQ IKLKDPQQEFEDCSHSNFDTLSKMD
Sequences:
>Translated_505_residues MFDFKSLVSSLLSKNTPASGVAQSATLLVRDLPQAEYFTALVEIIKAVSKINADTEMSLKERVKTLLYVDDKAAGIHHQL CQDYLHSKGGSKGYLPTILAYWHELASAYQICLRMHRGSPNQAGETELQLVATRGLHHQMRLLAWNALRYLKPEGNAWQQ GFRFYTYAEDAGFARSSILLYPDSRQEVSCEHLLIQAGMLHLAQTENMLHKEIVAVDQLLMLLCQHIPLDKQPPAETPIF VYNLSMPEPPQPMLRGMAGKWHRYWSSYEITTRLADLMFDLDNRIPSQIAALGCELEREEWSALCEKLAVRWSNDGGKSL RKSERSLHSSSAQVSIGFERVAFHIKVQDVGGLENDRADEWRINDISSTGMGLTFVGKTIDQLAIGRLILIKTETHPLLL GVIRRILRQNNGTKVGIEILGQTPVGVSLLDPAQPDSPPFSAIYITQPNSRKGQRWFLMPKTLLAGDKQLVLSAQGKSYQ IKLKDPQQEFEDCSHSNFDTLSKMD >Mature_505_residues MFDFKSLVSSLLSKNTPASGVAQSATLLVRDLPQAEYFTALVEIIKAVSKINADTEMSLKERVKTLLYVDDKAAGIHHQL CQDYLHSKGGSKGYLPTILAYWHELASAYQICLRMHRGSPNQAGETELQLVATRGLHHQMRLLAWNALRYLKPEGNAWQQ GFRFYTYAEDAGFARSSILLYPDSRQEVSCEHLLIQAGMLHLAQTENMLHKEIVAVDQLLMLLCQHIPLDKQPPAETPIF VYNLSMPEPPQPMLRGMAGKWHRYWSSYEITTRLADLMFDLDNRIPSQIAALGCELEREEWSALCEKLAVRWSNDGGKSL RKSERSLHSSSAQVSIGFERVAFHIKVQDVGGLENDRADEWRINDISSTGMGLTFVGKTIDQLAIGRLILIKTETHPLLL GVIRRILRQNNGTKVGIEILGQTPVGVSLLDPAQPDSPPFSAIYITQPNSRKGQRWFLMPKTLLAGDKQLVLSAQGKSYQ IKLKDPQQEFEDCSHSNFDTLSKMD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56784; Mature: 56784
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDFKSLVSSLLSKNTPASGVAQSATLLVRDLPQAEYFTALVEIIKAVSKINADTEMSLK CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH ERVKTLLYVDDKAAGIHHQLCQDYLHSKGGSKGYLPTILAYWHELASAYQICLRMHRGSP HHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC NQAGETELQLVATRGLHHQMRLLAWNALRYLKPEGNAWQQGFRFYTYAEDAGFARSSILL CCCCCCCEEEEEHHCHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCCCCCCEEEE YPDSRQEVSCEHLLIQAGMLHLAQTENMLHKEIVAVDQLLMLLCQHIPLDKQPPAETPIF ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE VYNLSMPEPPQPMLRGMAGKWHRYWSSYEITTRLADLMFDLDNRIPSQIAALGCELEREE EEECCCCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHH WSALCEKLAVRWSNDGGKSLRKSERSLHSSSAQVSIGFERVAFHIKVQDVGGLENDRADE HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCC WRINDISSTGMGLTFVGKTIDQLAIGRLILIKTETHPLLLGVIRRILRQNNGTKVGIEIL CEEECCCCCCCCEEEHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEE GQTPVGVSLLDPAQPDSPPFSAIYITQPNSRKGQRWFLMPKTLLAGDKQLVLSAQGKSYQ CCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHCCCCEEEEEECCCEEE IKLKDPQQEFEDCSHSNFDTLSKMD EEECCCHHHHHHCCCCCCCHHHCCC >Mature Secondary Structure MFDFKSLVSSLLSKNTPASGVAQSATLLVRDLPQAEYFTALVEIIKAVSKINADTEMSLK CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCHHHH ERVKTLLYVDDKAAGIHHQLCQDYLHSKGGSKGYLPTILAYWHELASAYQICLRMHRGSP HHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC NQAGETELQLVATRGLHHQMRLLAWNALRYLKPEGNAWQQGFRFYTYAEDAGFARSSILL CCCCCCCEEEEEHHCHHHHHHHHHHHHHHHCCCCCCHHHCCCEEEEEECCCCCCCCEEEE YPDSRQEVSCEHLLIQAGMLHLAQTENMLHKEIVAVDQLLMLLCQHIPLDKQPPAETPIF ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE VYNLSMPEPPQPMLRGMAGKWHRYWSSYEITTRLADLMFDLDNRIPSQIAALGCELEREE EEECCCCCCCHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHH WSALCEKLAVRWSNDGGKSLRKSERSLHSSSAQVSIGFERVAFHIKVQDVGGLENDRADE HHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEEEEECCCCCCCCCCC WRINDISSTGMGLTFVGKTIDQLAIGRLILIKTETHPLLLGVIRRILRQNNGTKVGIEIL CEEECCCCCCCCEEEHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHCCCCCEEEEEEE GQTPVGVSLLDPAQPDSPPFSAIYITQPNSRKGQRWFLMPKTLLAGDKQLVLSAQGKSYQ CCCCCCEEEECCCCCCCCCCEEEEEECCCCCCCCEEEECCHHHHCCCCEEEEEECCCEEE IKLKDPQQEFEDCSHSNFDTLSKMD EEECCCHHHHHHCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA