| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is hemH
Identifier: 34497935
GI number: 34497935
Start: 2670294
End: 2671388
Strand: Direct
Name: hemH
Synonym: CV_2480
Alternate gene names: 34497935
Gene position: 2670294-2671388 (Clockwise)
Preceding gene: 34497934
Following gene: 34497936
Centisome position: 56.2
GC content: 61.55
Gene sequence:
>1095_bases ATGGCCATGCCCCGCTATCTGACTGAACCGGCGTTCCGCCATGATTACGCGCCCAAAACCGGCGTGCTGCTGATCAACCT GGGCACGCCGGACGCGCCCACCGCGCAAGCGCTGCGTCCCTACCTCAAGCAATTTTTGTCCGACCCGCGCGTGATCGAGA TTCCGCGCCTGCCCTGGTGGCTGATTCTCAACGGCATCATCCTGAACACCCGCCCCAAGCAGTCGGCCAAGAAATACGCC AGCATCTGGACCAAGGAAGGTTCGCCGTTGCTGCTACATACCCGCAGCCAGGCCAAGCTGCTGAAAGGCCAGTTGGGCGA GATGGGACTGCACAATCTGGCCGTCGACTACGCGATGCGTTACGGCAACCCATCGATCGAGAGCGTGATCGGCAAGATGC GCGAGCAAGGCGTGGAAAGACTGCTGCTGCTGCCGCTGTATCCGCAATACGCCGCCTCCTCCAGCGCCACCGCGCTGGAC GAAGCCTTCCGCGTGCTGAGCCGGCTGCGCAACATGCCGGAAGTCCGCACGGTGAGGCATTTTCACGATGATCCGGGCTA CATCGCCGCGCTGGCCGCTCAAATCCGCAAGCATTGGCAATACGGCCAGCGGCCGGACAAGCTGGTGATGAGCTTCCACG GCGTGCCGCGCTTCACCCGCGACAAAGGCGATCCCTACCATTGCGAATGCCAGAAGACAGGACGGCTGCTGGCGGAAGCG CTGCAGCTGCGGCCGGATCAATACGTCATCAGTTTCCAGAGCCGCTTCGGCCGCACCGAATGGCTAAAACCGTATACCAG CGAAGTGCTGGAAGCGCTGGGCAAGGCGAAAACCGCCAGGGTGGATGTCGTCTGCCCCGGTTTTGTCGGCGATTGCCTGG AAACGCTGGAAGAAATCGCGATGGAGGGCAAGGAAACCTTCCTGAGCCACGGCGGTGGCGAATTCCGCTACATCCCCTGT CTGAACGAAGACCCGCAATGGATATCCTCTCTCGCGGGAATAGTCCGGAACAATCTGGCCGGATGGACTGAAATTCGGGC AGAAGATAGCCAGCAAAGAGCGGCCCTCGCCCATGACATGGGGGCATCCGCCTGA
Upstream 100 bases:
>100_bases ATCCTCGATGGAAAGCAACGGCAACCGCACCGTGCTGGCCCCCGCCCGCGACGATTGACCTTCGGGGGCGCTTTTGCGCC CCGCTACCCACTTCTTAAGG
Downstream 100 bases:
>100_bases CATCAATGCCGGGCGCGGCATGTCGGCGCGCAACGCACAAAGCATTGAAAATCAAACGGATAAGCTAAAATGACGGGCGT ATGACCAAATGGCCATACGC
Product: ferrochelatase
Products: NA
Alternate protein names: Heme synthase; Protoheme ferro-lyase
Number of amino acids: Translated: 364; Mature: 363
Protein sequence:
>364_residues MAMPRYLTEPAFRHDYAPKTGVLLINLGTPDAPTAQALRPYLKQFLSDPRVIEIPRLPWWLILNGIILNTRPKQSAKKYA SIWTKEGSPLLLHTRSQAKLLKGQLGEMGLHNLAVDYAMRYGNPSIESVIGKMREQGVERLLLLPLYPQYAASSSATALD EAFRVLSRLRNMPEVRTVRHFHDDPGYIAALAAQIRKHWQYGQRPDKLVMSFHGVPRFTRDKGDPYHCECQKTGRLLAEA LQLRPDQYVISFQSRFGRTEWLKPYTSEVLEALGKAKTARVDVVCPGFVGDCLETLEEIAMEGKETFLSHGGGEFRYIPC LNEDPQWISSLAGIVRNNLAGWTEIRAEDSQQRAALAHDMGASA
Sequences:
>Translated_364_residues MAMPRYLTEPAFRHDYAPKTGVLLINLGTPDAPTAQALRPYLKQFLSDPRVIEIPRLPWWLILNGIILNTRPKQSAKKYA SIWTKEGSPLLLHTRSQAKLLKGQLGEMGLHNLAVDYAMRYGNPSIESVIGKMREQGVERLLLLPLYPQYAASSSATALD EAFRVLSRLRNMPEVRTVRHFHDDPGYIAALAAQIRKHWQYGQRPDKLVMSFHGVPRFTRDKGDPYHCECQKTGRLLAEA LQLRPDQYVISFQSRFGRTEWLKPYTSEVLEALGKAKTARVDVVCPGFVGDCLETLEEIAMEGKETFLSHGGGEFRYIPC LNEDPQWISSLAGIVRNNLAGWTEIRAEDSQQRAALAHDMGASA >Mature_363_residues AMPRYLTEPAFRHDYAPKTGVLLINLGTPDAPTAQALRPYLKQFLSDPRVIEIPRLPWWLILNGIILNTRPKQSAKKYAS IWTKEGSPLLLHTRSQAKLLKGQLGEMGLHNLAVDYAMRYGNPSIESVIGKMREQGVERLLLLPLYPQYAASSSATALDE AFRVLSRLRNMPEVRTVRHFHDDPGYIAALAAQIRKHWQYGQRPDKLVMSFHGVPRFTRDKGDPYHCECQKTGRLLAEAL QLRPDQYVISFQSRFGRTEWLKPYTSEVLEALGKAKTARVDVVCPGFVGDCLETLEEIAMEGKETFLSHGGGEFRYIPCL NEDPQWISSLAGIVRNNLAGWTEIRAEDSQQRAALAHDMGASA
Specific function: Catalyzes the ferrous insertion into protoporphyrin IX
COG id: COG0276
COG function: function code H; Protoheme ferro-lyase (ferrochelatase)
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ferrochelatase family
Homologues:
Organism=Homo sapiens, GI60499021, Length=331, Percent_Identity=26.2839879154079, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI60499025, Length=331, Percent_Identity=26.2839879154079, Blast_Score=97, Evalue=2e-20, Organism=Escherichia coli, GI1786681, Length=317, Percent_Identity=45.7413249211356, Blast_Score=290, Evalue=7e-80, Organism=Saccharomyces cerevisiae, GI6324750, Length=332, Percent_Identity=25.6024096385542, Blast_Score=87, Evalue=4e-18, Organism=Drosophila melanogaster, GI17864156, Length=339, Percent_Identity=27.4336283185841, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI24651774, Length=271, Percent_Identity=27.6752767527675, Blast_Score=84, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): HEMH_CHRVO (Q7NV65)
Other databases:
- EMBL: AE016825 - RefSeq: NP_902150.1 - ProteinModelPortal: Q7NV65 - SMR: Q7NV65 - GeneID: 2547518 - GenomeReviews: AE016825_GR - KEGG: cvi:CV_2480 - NMPDR: fig|243365.1.peg.2480 - HOGENOM: HBG697135 - OMA: TIEEIGM - PhylomeDB: Q7NV65 - ProtClustDB: PRK00035 - BioCyc: CVIO243365:CV_2480-MONOMER - BRENDA: 4.99.1.1 - GO: GO:0005737 - HAMAP: MF_00323 - InterPro: IPR001015 - InterPro: IPR019772 - PANTHER: PTHR11108 - TIGRFAMs: TIGR00109
Pfam domain/function: PF00762 Ferrochelatase
EC number: =4.99.1.1
Molecular weight: Translated: 41028; Mature: 40896
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: PS00534 FERROCHELATASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMPRYLTEPAFRHDYAPKTGVLLINLGTPDAPTAQALRPYLKQFLSDPRVIEIPRLPWW CCCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHH LILNGIILNTRPKQSAKKYASIWTKEGSPLLLHTRSQAKLLKGQLGEMGLHNLAVDYAMR HHHCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCHHHHHHHHHHHH YGNPSIESVIGKMREQGVERLLLLPLYPQYAASSSATALDEAFRVLSRLRNMPEVRTVRH CCCCCHHHHHHHHHHHHHHHEEHHCCCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH FHDDPGYIAALAAQIRKHWQYGQRPDKLVMSFHGVPRFTRDKGDPYHCECQKTGRLLAEA HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHH LQLRPDQYVISFQSRFGRTEWLKPYTSEVLEALGKAKTARVDVVCPGFVGDCLETLEEIA HHCCCCHHEEEEHHHCCCCHHCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH MEGKETFLSHGGGEFRYIPCLNEDPQWISSLAGIVRNNLAGWTEIRAEDSQQRAALAHDM HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHC GASA CCCC >Mature Secondary Structure AMPRYLTEPAFRHDYAPKTGVLLINLGTPDAPTAQALRPYLKQFLSDPRVIEIPRLPWW CCCCCCCCCHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCHH LILNGIILNTRPKQSAKKYASIWTKEGSPLLLHTRSQAKLLKGQLGEMGLHNLAVDYAMR HHHCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHCHHHHHHHHHHHH YGNPSIESVIGKMREQGVERLLLLPLYPQYAASSSATALDEAFRVLSRLRNMPEVRTVRH CCCCCHHHHHHHHHHHHHHHEEHHCCCHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHH FHDDPGYIAALAAQIRKHWQYGQRPDKLVMSFHGVPRFTRDKGDPYHCECQKTGRLLAEA HCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHHHH LQLRPDQYVISFQSRFGRTEWLKPYTSEVLEALGKAKTARVDVVCPGFVGDCLETLEEIA HHCCCCHHEEEEHHHCCCCHHCCHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH MEGKETFLSHGGGEFRYIPCLNEDPQWISSLAGIVRNNLAGWTEIRAEDSQQRAALAHDM HHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHC GASA CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 14500782