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The map label for this gene is nusB

Identifier: 34497846

GI number: 34497846

Start: 2572697

End: 2573146

Strand: Direct

Name: nusB

Synonym: CV_2391

Alternate gene names: 34497846

Gene position: 2572697-2573146 (Clockwise)

Preceding gene: 34497845

Following gene: 34497847

Centisome position: 54.15

GC content: 62.67

Gene sequence:

>450_bases
ATGAAAACCGCCCGTCGCCGCGCCCGCGAATTCGCTGTGCAAGGCATCTATGAATGGGAGCTGAATCCGGATCGCCCGGC
TTCGCTGATCGAAAAACACCTGCGCGAGAACGAATACTTCGCCAAGGCCGACGAAGCCTTGTTCCGCAGCATCCTGTACG
GCGTGCTGAAGGATGTTGAGCTGCTGTCCGCCCAGGTCGGCCGCTACTACGAGCGCGCCGAGGACGAGGTCAGCCCGGTG
GAGCGCGCCGTGCTGCTGATGGCCGCGCTGGAGCTGACGCAAAGCCCGGAAACCCCGTACCCGGTGATCATCAACGAAGC
CATCGAGATCACCAAGACTTTCGGCGGCACCGACGGCCACAAATTCGTCAACGGCGTGCTGGACAAGCTCGCCGCCGAAG
TGCGCGGCGATGAAGTGCTGGCGCAGAAACAGCGCCGCAAACAGGACTGA

Upstream 100 bases:

>100_bases
CTGCACAAGACGCTGCGCGGCTGAGCCGTTCGCCGCCAGTCGTCCAACGGGAAGCGGGGCGGTCGCGCCGCTTCCCTTGC
TCTTTCAAGGAATCGCCACC

Downstream 100 bases:

>100_bases
GCTGGACGCCGCAGGCGTGCCGCTGTCGACGACACCCGCCGCGGCGGGTGTTTTTGCGTGAGAAGCTCATGAACGAATTC
GAACTGATCGGCCGCTATTT

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MKTARRRAREFAVQGIYEWELNPDRPASLIEKHLRENEYFAKADEALFRSILYGVLKDVELLSAQVGRYYERAEDEVSPV
ERAVLLMAALELTQSPETPYPVIINEAIEITKTFGGTDGHKFVNGVLDKLAAEVRGDEVLAQKQRRKQD

Sequences:

>Translated_149_residues
MKTARRRAREFAVQGIYEWELNPDRPASLIEKHLRENEYFAKADEALFRSILYGVLKDVELLSAQVGRYYERAEDEVSPV
ERAVLLMAALELTQSPETPYPVIINEAIEITKTFGGTDGHKFVNGVLDKLAAEVRGDEVLAQKQRRKQD
>Mature_149_residues
MKTARRRAREFAVQGIYEWELNPDRPASLIEKHLRENEYFAKADEALFRSILYGVLKDVELLSAQVGRYYERAEDEVSPV
ERAVLLMAALELTQSPETPYPVIINEAIEITKTFGGTDGHKFVNGVLDKLAAEVRGDEVLAQKQRRKQD

Specific function: Involved in the transcription termination process

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family

Homologues:

Organism=Escherichia coli, GI1786618, Length=126, Percent_Identity=42.0634920634921, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NUSB_CHRVO (Q7NVF2)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_902061.1
- ProteinModelPortal:   Q7NVF2
- SMR:   Q7NVF2
- GeneID:   2548930
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_2391
- NMPDR:   fig|243365.1.peg.2391
- HOGENOM:   HBG734409
- OMA:   IPYKVVI
- PhylomeDB:   Q7NVF2
- ProtClustDB:   PRK00202
- BioCyc:   CVIO243365:CV_2391-MONOMER
- HAMAP:   MF_00073
- InterPro:   IPR011605
- InterPro:   IPR006027
- Gene3D:   G3DSA:1.10.940.10
- TIGRFAMs:   TIGR01951

Pfam domain/function: PF01029 NusB; SSF48013 NusB_RsmB_TIM44

EC number: NA

Molecular weight: Translated: 17008; Mature: 17008

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTARRRAREFAVQGIYEWELNPDRPASLIEKHLRENEYFAKADEALFRSILYGVLKDVE
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LLSAQVGRYYERAEDEVSPVERAVLLMAALELTQSPETPYPVIINEAIEITKTFGGTDGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH
KFVNGVLDKLAAEVRGDEVLAQKQRRKQD
HHHHHHHHHHHHHHCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKTARRRAREFAVQGIYEWELNPDRPASLIEKHLRENEYFAKADEALFRSILYGVLKDVE
CCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
LLSAQVGRYYERAEDEVSPVERAVLLMAALELTQSPETPYPVIINEAIEITKTFGGTDGH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHH
KFVNGVLDKLAAEVRGDEVLAQKQRRKQD
HHHHHHHHHHHHHHCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782