| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is mtrA [H]
Identifier: 34497816
GI number: 34497816
Start: 2548084
End: 2548782
Strand: Direct
Name: mtrA [H]
Synonym: CV_2361
Alternate gene names: 34497816
Gene position: 2548084-2548782 (Clockwise)
Preceding gene: 34497815
Following gene: 34497817
Centisome position: 53.63
GC content: 58.94
Gene sequence:
>699_bases ATGAGCAAAATCGACAAGCAGGACCAGCAGGAAGCGATATCGCAGCGCATCCGTTACCGGTTGCAGGCGGCGGGGGCGCG CTTCCATGCCAACGACAATATATCGGCCTTTATCGAGGACGGAGAGCTGGATGCATTGCAGGAAGAGGTGCAGGCCAAGC TCAAGGGCGTGCTGGAAAGCTTGGTGATCGATACCGCGAACGACCACAACACGCAGGAGACCGCGAAGCGGGTGGCGAAG ATGTTCGTCCGCGAAGTATTTCGGGGGCGCTACGTGTCGATGCCTCCCTGCACCGAATTCCCGAATGTCGAGCATCTGAA CGAGCTGATGATCATCGGGCCGATCACGGTGCGCAGCGCCTGCTCCCATCATCTTTGCCCCATCATCGGCCGGGTGTGGG TGGGCGTGCTGCCGAACGAGGCTTCGAACCTGATCGGGCTGTCCAAATACGCCCGCCTGATAGATTGGGTGATGACCCGT CCGCAGATACAGGAAGAGGCGGTATCGCAGATAGCGGATTTGCTGATGCAGAAGCTGCAGCCTGACGGTCTGGCCATCGT GATGGAGGCGGATCACTTCTGCATGCACTGGCGCGGCGTGAAGGACAGCAACAGCAAGATGACCAATAGCGTGATGCGCG GCTCCTTCCTGACCAATCCGGACCTGCGCAAGGAATTTCTGTCCTTGATGCGGAAGTGA
Upstream 100 bases:
>100_bases CGCGGCCATGCGCTTGCGTGCATGGACCGCTCGAACCCGTGCCGTAAGTTGCTGTATATTTCGAAATGATTTCCATTTTC TTGCGAACAAGTAATCAACA
Downstream 100 bases:
>100_bases GCGGGCGGCATAGGGCCGGACGCGCAGCATTTACTTGAATGAAAGAGCCTATGTTTTCCACACGAATGATTTCCGCCCTG GCCCTGCTGGCCTGCGCGAG
Product: GTP cyclohydrolase I
Products: NA
Alternate protein names: GTP cyclohydrolase I; GTP-CH-I [H]
Number of amino acids: Translated: 232; Mature: 231
Protein sequence:
>232_residues MSKIDKQDQQEAISQRIRYRLQAAGARFHANDNISAFIEDGELDALQEEVQAKLKGVLESLVIDTANDHNTQETAKRVAK MFVREVFRGRYVSMPPCTEFPNVEHLNELMIIGPITVRSACSHHLCPIIGRVWVGVLPNEASNLIGLSKYARLIDWVMTR PQIQEEAVSQIADLLMQKLQPDGLAIVMEADHFCMHWRGVKDSNSKMTNSVMRGSFLTNPDLRKEFLSLMRK
Sequences:
>Translated_232_residues MSKIDKQDQQEAISQRIRYRLQAAGARFHANDNISAFIEDGELDALQEEVQAKLKGVLESLVIDTANDHNTQETAKRVAK MFVREVFRGRYVSMPPCTEFPNVEHLNELMIIGPITVRSACSHHLCPIIGRVWVGVLPNEASNLIGLSKYARLIDWVMTR PQIQEEAVSQIADLLMQKLQPDGLAIVMEADHFCMHWRGVKDSNSKMTNSVMRGSFLTNPDLRKEFLSLMRK >Mature_231_residues SKIDKQDQQEAISQRIRYRLQAAGARFHANDNISAFIEDGELDALQEEVQAKLKGVLESLVIDTANDHNTQETAKRVAKM FVREVFRGRYVSMPPCTEFPNVEHLNELMIIGPITVRSACSHHLCPIIGRVWVGVLPNEASNLIGLSKYARLIDWVMTRP QIQEEAVSQIADLLMQKLQPDGLAIVMEADHFCMHWRGVKDSNSKMTNSVMRGSFLTNPDLRKEFLSLMRK
Specific function: Tetrahydrofolate biosynthesis; first step. [C]
COG id: COG0302
COG function: function code H; GTP cyclohydrolase I
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP cyclohydrolase I family [H]
Homologues:
Organism=Homo sapiens, GI66932968, Length=128, Percent_Identity=42.96875, Blast_Score=111, Evalue=4e-25, Organism=Homo sapiens, GI4503949, Length=128, Percent_Identity=42.96875, Blast_Score=111, Evalue=4e-25, Organism=Homo sapiens, GI66932970, Length=97, Percent_Identity=37.1134020618557, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI66932972, Length=87, Percent_Identity=40.2298850574713, Blast_Score=71, Evalue=8e-13, Organism=Escherichia coli, GI1788476, Length=183, Percent_Identity=32.7868852459016, Blast_Score=108, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17560486, Length=129, Percent_Identity=42.6356589147287, Blast_Score=116, Evalue=9e-27, Organism=Saccharomyces cerevisiae, GI6321706, Length=124, Percent_Identity=42.741935483871, Blast_Score=102, Evalue=6e-23, Organism=Drosophila melanogaster, GI24656782, Length=127, Percent_Identity=41.7322834645669, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24656796, Length=127, Percent_Identity=41.7322834645669, Blast_Score=95, Evalue=3e-20, Organism=Drosophila melanogaster, GI24656791, Length=127, Percent_Identity=41.7322834645669, Blast_Score=95, Evalue=4e-20,
Paralogues:
None
Copy number: 420 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001474 - InterPro: IPR020602 - InterPro: IPR018234 [H]
Pfam domain/function: PF01227 GTP_cyclohydroI [H]
EC number: =3.5.4.16 [H]
Molecular weight: Translated: 26348; Mature: 26217
Theoretical pI: Translated: 7.18; Mature: 7.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 6.5 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKIDKQDQQEAISQRIRYRLQAAGARFHANDNISAFIEDGELDALQEEVQAKLKGVLES CCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHH LVIDTANDHNTQETAKRVAKMFVREVFRGRYVSMPPCTEFPNVEHLNELMIIGPITVRSA HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEHEECCHHHHHH CSHHLCPIIGRVWVGVLPNEASNLIGLSKYARLIDWVMTRPQIQEEAVSQIADLLMQKLQ HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC PDGLAIVMEADHFCMHWRGVKDSNSKMTNSVMRGSFLTNPDLRKEFLSLMRK CCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SKIDKQDQQEAISQRIRYRLQAAGARFHANDNISAFIEDGELDALQEEVQAKLKGVLES CCCCHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHH LVIDTANDHNTQETAKRVAKMFVREVFRGRYVSMPPCTEFPNVEHLNELMIIGPITVRSA HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHEHEECCHHHHHH CSHHLCPIIGRVWVGVLPNEASNLIGLSKYARLIDWVMTRPQIQEEAVSQIADLLMQKLQ HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC PDGLAIVMEADHFCMHWRGVKDSNSKMTNSVMRGSFLTNPDLRKEFLSLMRK CCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA