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The map label for this gene is yijO [H]

Identifier: 34497768

GI number: 34497768

Start: 2506536

End: 2507354

Strand: Direct

Name: yijO [H]

Synonym: CV_2313

Alternate gene names: 34497768

Gene position: 2506536-2507354 (Clockwise)

Preceding gene: 34497767

Following gene: 34497771

Centisome position: 52.76

GC content: 64.84

Gene sequence:

>819_bases
ATGACGCCGCTCCCGTCCTTCCGCCTGAGCTGGCCGTCCGCGCTCCAGCGGCTGTGCCACGCGCCAGCCGGCAAGCACAT
GCCTGCTGGCGCCTATCAGGTGCATTTCCCGCGGTTGGAGCTGGTGTTGTCCAATCGCTACCATTACAGCCATGAGGGCT
GCGAGAACGCCAGCCTGTCGGCGCAGGAGGCGCTGTTCATTCCGGCCGAGCATTGGACGCTGCCGAACTGGTGCGCCAAC
GGCGAAGTGCTGCATATCTTGTTTGACTACGCGCGGATAGGTTTCAGCCTGGTGCGCTCCGGCCCGCAGGGCGTGATCAG
CACTCACAAGGAAAGCATGGTGCTGGCCCAGCGCGGCAGCCTGAACGGCATGCTGGATGTGCTGGCCGGCCTGTGCCGCG
ATGGCGCCGATCCGGAAGTGCTGCGCCTGCAAGGCCAGGCGTTGCTGGCCTTGCTGCAGTCGCTGTACGACGAGGCGCGC
GACAGCCAGTGGCAGCAGGGCGGCAACCTGTTCCGCGCCATCTGCCTGTACATCAGCGAGCATCTGTACGCGCCGCTGAC
GCGCGAGGATGTGGCGCTGCGTTTCAGCATTTCCGCTACCCATCTGTCTCGGCTGTTCCGCCAGCACTTGGGCCTGGGCT
TCTGCGAATTCCTGTCCCATGCCCGGCTTGACCTGGCCAAGGCCTTGCTGAGGCAGGGACAGCTGCCGCTCAGCCGCGTC
GCCGCCCGTTGCGGCTACGCCGACGTCAACTACTTCCATCGAGTATTCAAGCAACGTTTCGCGATGACGCCATGCGCGTA
CAGGAGGGAGTTCGCGTAA

Upstream 100 bases:

>100_bases
GCGCAAGCCGGCCGGCTGGCGCTGGCCTACCGCGCCTTTTGCCCGATGGCCGGCTGATGCTAAGGTGGCGGATAGTCCAG
ATTGAGACGGATAGAAAGAC

Downstream 100 bases:

>100_bases
GCGTTTATCGCTCGCCTGACTGGGCGTCAACCGGCTTGAGGCCATGACTGTGGGTCCAGGCGTTCAACGAATCCGCGAAT
ACCGGATAGGCATCGGCGAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MTPLPSFRLSWPSALQRLCHAPAGKHMPAGAYQVHFPRLELVLSNRYHYSHEGCENASLSAQEALFIPAEHWTLPNWCAN
GEVLHILFDYARIGFSLVRSGPQGVISTHKESMVLAQRGSLNGMLDVLAGLCRDGADPEVLRLQGQALLALLQSLYDEAR
DSQWQQGGNLFRAICLYISEHLYAPLTREDVALRFSISATHLSRLFRQHLGLGFCEFLSHARLDLAKALLRQGQLPLSRV
AARCGYADVNYFHRVFKQRFAMTPCAYRREFA

Sequences:

>Translated_272_residues
MTPLPSFRLSWPSALQRLCHAPAGKHMPAGAYQVHFPRLELVLSNRYHYSHEGCENASLSAQEALFIPAEHWTLPNWCAN
GEVLHILFDYARIGFSLVRSGPQGVISTHKESMVLAQRGSLNGMLDVLAGLCRDGADPEVLRLQGQALLALLQSLYDEAR
DSQWQQGGNLFRAICLYISEHLYAPLTREDVALRFSISATHLSRLFRQHLGLGFCEFLSHARLDLAKALLRQGQLPLSRV
AARCGYADVNYFHRVFKQRFAMTPCAYRREFA
>Mature_271_residues
TPLPSFRLSWPSALQRLCHAPAGKHMPAGAYQVHFPRLELVLSNRYHYSHEGCENASLSAQEALFIPAEHWTLPNWCANG
EVLHILFDYARIGFSLVRSGPQGVISTHKESMVLAQRGSLNGMLDVLAGLCRDGADPEVLRLQGQALLALLQSLYDEARD
SQWQQGGNLFRAICLYISEHLYAPLTREDVALRFSISATHLSRLFRQHLGLGFCEFLSHARLDLAKALLRQGQLPLSRVA
ARCGYADVNYFHRVFKQRFAMTPCAYRREFA

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790391, Length=269, Percent_Identity=34.9442379182156, Blast_Score=135, Evalue=2e-33,
Organism=Escherichia coli, GI1788725, Length=261, Percent_Identity=31.4176245210728, Blast_Score=127, Evalue=7e-31,
Organism=Escherichia coli, GI1786251, Length=101, Percent_Identity=35.6435643564356, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30651; Mature: 30519

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPLPSFRLSWPSALQRLCHAPAGKHMPAGAYQVHFPRLELVLSNRYHYSHEGCENASLS
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCC
AQEALFIPAEHWTLPNWCANGEVLHILFDYARIGFSLVRSGPQGVISTHKESMVLAQRGS
CHHEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
LNGMLDVLAGLCRDGADPEVLRLQGQALLALLQSLYDEARDSQWQQGGNLFRAICLYISE
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLYAPLTREDVALRFSISATHLSRLFRQHLGLGFCEFLSHARLDLAKALLRQGQLPLSRV
HHCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
AARCGYADVNYFHRVFKQRFAMTPCAYRREFA
HHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCC
>Mature Secondary Structure 
TPLPSFRLSWPSALQRLCHAPAGKHMPAGAYQVHFPRLELVLSNRYHYSHEGCENASLS
CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHCCCCCCCCCCCCCCCC
AQEALFIPAEHWTLPNWCANGEVLHILFDYARIGFSLVRSGPQGVISTHKESMVLAQRGS
CHHEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
LNGMLDVLAGLCRDGADPEVLRLQGQALLALLQSLYDEARDSQWQQGGNLFRAICLYISE
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HLYAPLTREDVALRFSISATHLSRLFRQHLGLGFCEFLSHARLDLAKALLRQGQLPLSRV
HHCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH
AARCGYADVNYFHRVFKQRFAMTPCAYRREFA
HHHCCCCHHHHHHHHHHHHHCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8265357; 9278503 [H]