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The map label for this gene is yciR [C]

Identifier: 34497763

GI number: 34497763

Start: 2499058

End: 2501097

Strand: Reverse

Name: yciR [C]

Synonym: CV_2308

Alternate gene names: 34497763

Gene position: 2501097-2499058 (Counterclockwise)

Preceding gene: 34497769

Following gene: 34497760

Centisome position: 52.64

GC content: 65.2

Gene sequence:

>2040_bases
ATGGCTGGCAACTTGCGGCACTACTCCGGCGAACAGCTGCTGAAGCTGGAGAAAAGCCGCGCGGCGTCGCTGGTGCAGAT
TTTCGAGAACTCGCTGTGGACCGACTTTCGCCCGCTGCTGCCTTTGGCCCGCGACCCGGCGAAGCTGAAGCAGGTGGCCG
GCCAGCCCCGGCTGCGCGAGGCGGTGATACGGCTGATGCGCGGCACCGACGTGATTCGGGTCAAGATGTACGCGCTCAAT
GGCATCACGCTGTTCTCCACCGACGCCAGCCAGATCGGAGAAGACGAAAGCGACGACGACGGCTTCCGGTCGGCCGCCGC
CGGCACGCCGGCAAGCGAGCTGGCCCACAATCACAGCATCGACGCCTTCGAGCGCACGCTGACCGACCGCGACATCATTT
CCACCTACGTGCCGGTGCACGACCCCGCCGGGAAGATAGAAGGCGTGCTGGAAATCTACCTGGACGCCACGCCTTTCGTC
GCCGACAGCGACCAGCAGCTGAGCTGGGTGACCCTGGCCATCTGCGCGCTGATGGCGGTGCTGTTCGTCGCCCAGATGCT
GGTGGTGCGGCTGGCCGGCCGCATCATAGACCGCCAGGCGGCGGCCTTGTCCGAGACCAACCGCGAACTGGACAGCCGGG
TGGCGGCCCGCACCTGGGAACTGGCCAACGCCAACGCTCGGCTGGAAGACGAAATCCAGGAACGCCGCCGCGCAGAGGAA
AGGCTGGACCACCTGGCACACCACGATCCCTTGACCGGCCTGCCCAACCGGCTGCTGTTCCAGAAACGGCTGAGCCGCGC
GCTGAGCGTTCCCGACCTGCCTCCGTACAAGCTGGCCATGCTGTTCATCGACCTGGACCGATTCAAGGATGTGAACGACA
CGCTGGGACACTACATCGGCGACCAGTTGCTGAACGCGGTGGCAGCCCGGCTGGCGGACAGCATCCGCGCCGAGGACATG
CTGGCCCGGCTGGGCGGGGACGAATTCATCTGCGTGCTGGAAAGCATCGAAAACCGGGACATGGCCGCCGATGTGGCCGG
CAAGCTGCTGGCGCTGTTCCGGCAGCCGTTCTGCATCAACGGCAACGATCTCTACCTGTCGGCCAGCATAGGCATCAGCT
TCGCCGGCAACGACGGCGCGGATGTGGACACCCTGCTTCGCCACGCGGACATCGCGATGTACAGCGCCAAGAACGCGGGC
CGCAACCGCTGCCAGCATTACAGTCCTCAGATGTCCGAGGACGCCGAGCAGCGGGTGGTGCTGGAACGACAACTGCGCCA
GGCGCTGGACAACGACGAAATCACCGTCCACTACCAACCGCAAGTCGACGCGGTCACCGGCAAGCTGGTCGGCGCCGAGG
CGCTGGCGCGCTGGCGGCATCCCATACTTGGCATGGTGCCGCCGGCGCGATTCATTCCGGTCGCGGAAGAATGCGGCCTG
ATCGTGGCGCTAGGCGAGCAGATTCTGGAGAAGTCGCTGCGCCAGCTGGCAAGCTGGCATGAGGCAGGATTCCCGCTGCC
ATCGGTTTCGGTGAATCTCTCCGCCCGCCAGCTGGAGCGGCAAGACTTCCCGCAGCATGTCGCCCGACTGCTGAAGCGCT
ACCGGCTGGAGCCGCGGCACCTGGAGCTGGAAATCACCGAAAGCGTGATCATGGCGACGGAAGACGCGGTCAACATCCTG
GCTGAATTGCGCGCACAGGGCATCCGGCTGTCGATCGACGACTTCGGCACCGGATATTCATCGCTCTCCTACCTGCGGCA
GCTGCCGGTGCAGGTGCTGAAAGTAGACCGCAGCTTCATACTCGGCATCGGCAAGGGCGGCGAGGCCATCGTGCACGCCA
TCATGGCGCTGTCTTCCAGCCTGGGCCTGGAAACCGTGGCTGAGGGCGTGGAGGAGGCATCGCAGCTGGAATTCCTGCGT
TCGGCCGGATGCCACATCATCCAGGGATTTCTTTACGCCGCTCCCCTGCCAGCGGAAAGTTTCGCCGATGGCTGGCGAGA
CCGGCTGCATGCGCCCTCCAGCCCCTTGCAGGAAGGCTAG

Upstream 100 bases:

>100_bases
CCGCGCCATGCGCAGCCTGTTTTCATCCGGTCGGCCATTCCGGCTGGTGCCCTATTTTTTCCTGCTGTCGCTGCTGTTGA
TGGCGGGCGCCACCGCGCTG

Downstream 100 bases:

>100_bases
CCAGCGCGTCTCGCTCAGCCCCGTCGGCATGAGAAACCATGCACGGGCAGCATGAAGCGCAGATCAACCGGGGACGCCGC
CCAAACCTTTCGGACATAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 679; Mature: 678

Protein sequence:

>679_residues
MAGNLRHYSGEQLLKLEKSRAASLVQIFENSLWTDFRPLLPLARDPAKLKQVAGQPRLREAVIRLMRGTDVIRVKMYALN
GITLFSTDASQIGEDESDDDGFRSAAAGTPASELAHNHSIDAFERTLTDRDIISTYVPVHDPAGKIEGVLEIYLDATPFV
ADSDQQLSWVTLAICALMAVLFVAQMLVVRLAGRIIDRQAAALSETNRELDSRVAARTWELANANARLEDEIQERRRAEE
RLDHLAHHDPLTGLPNRLLFQKRLSRALSVPDLPPYKLAMLFIDLDRFKDVNDTLGHYIGDQLLNAVAARLADSIRAEDM
LARLGGDEFICVLESIENRDMAADVAGKLLALFRQPFCINGNDLYLSASIGISFAGNDGADVDTLLRHADIAMYSAKNAG
RNRCQHYSPQMSEDAEQRVVLERQLRQALDNDEITVHYQPQVDAVTGKLVGAEALARWRHPILGMVPPARFIPVAEECGL
IVALGEQILEKSLRQLASWHEAGFPLPSVSVNLSARQLERQDFPQHVARLLKRYRLEPRHLELEITESVIMATEDAVNIL
AELRAQGIRLSIDDFGTGYSSLSYLRQLPVQVLKVDRSFILGIGKGGEAIVHAIMALSSSLGLETVAEGVEEASQLEFLR
SAGCHIIQGFLYAAPLPAESFADGWRDRLHAPSSPLQEG

Sequences:

>Translated_679_residues
MAGNLRHYSGEQLLKLEKSRAASLVQIFENSLWTDFRPLLPLARDPAKLKQVAGQPRLREAVIRLMRGTDVIRVKMYALN
GITLFSTDASQIGEDESDDDGFRSAAAGTPASELAHNHSIDAFERTLTDRDIISTYVPVHDPAGKIEGVLEIYLDATPFV
ADSDQQLSWVTLAICALMAVLFVAQMLVVRLAGRIIDRQAAALSETNRELDSRVAARTWELANANARLEDEIQERRRAEE
RLDHLAHHDPLTGLPNRLLFQKRLSRALSVPDLPPYKLAMLFIDLDRFKDVNDTLGHYIGDQLLNAVAARLADSIRAEDM
LARLGGDEFICVLESIENRDMAADVAGKLLALFRQPFCINGNDLYLSASIGISFAGNDGADVDTLLRHADIAMYSAKNAG
RNRCQHYSPQMSEDAEQRVVLERQLRQALDNDEITVHYQPQVDAVTGKLVGAEALARWRHPILGMVPPARFIPVAEECGL
IVALGEQILEKSLRQLASWHEAGFPLPSVSVNLSARQLERQDFPQHVARLLKRYRLEPRHLELEITESVIMATEDAVNIL
AELRAQGIRLSIDDFGTGYSSLSYLRQLPVQVLKVDRSFILGIGKGGEAIVHAIMALSSSLGLETVAEGVEEASQLEFLR
SAGCHIIQGFLYAAPLPAESFADGWRDRLHAPSSPLQEG
>Mature_678_residues
AGNLRHYSGEQLLKLEKSRAASLVQIFENSLWTDFRPLLPLARDPAKLKQVAGQPRLREAVIRLMRGTDVIRVKMYALNG
ITLFSTDASQIGEDESDDDGFRSAAAGTPASELAHNHSIDAFERTLTDRDIISTYVPVHDPAGKIEGVLEIYLDATPFVA
DSDQQLSWVTLAICALMAVLFVAQMLVVRLAGRIIDRQAAALSETNRELDSRVAARTWELANANARLEDEIQERRRAEER
LDHLAHHDPLTGLPNRLLFQKRLSRALSVPDLPPYKLAMLFIDLDRFKDVNDTLGHYIGDQLLNAVAARLADSIRAEDML
ARLGGDEFICVLESIENRDMAADVAGKLLALFRQPFCINGNDLYLSASIGISFAGNDGADVDTLLRHADIAMYSAKNAGR
NRCQHYSPQMSEDAEQRVVLERQLRQALDNDEITVHYQPQVDAVTGKLVGAEALARWRHPILGMVPPARFIPVAEECGLI
VALGEQILEKSLRQLASWHEAGFPLPSVSVNLSARQLERQDFPQHVARLLKRYRLEPRHLELEITESVIMATEDAVNILA
ELRAQGIRLSIDDFGTGYSSLSYLRQLPVQVLKVDRSFILGIGKGGEAIVHAIMALSSSLGLETVAEGVEEASQLEFLRS
AGCHIIQGFLYAAPLPAESFADGWRDRLHAPSSPLQEG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=441, Percent_Identity=39.2290249433107, Blast_Score=313, Evalue=2e-86,
Organism=Escherichia coli, GI87081921, Length=437, Percent_Identity=37.5286041189931, Blast_Score=279, Evalue=5e-76,
Organism=Escherichia coli, GI226510982, Length=436, Percent_Identity=34.4036697247706, Blast_Score=227, Evalue=2e-60,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=37.6569037656904, Blast_Score=166, Evalue=5e-42,
Organism=Escherichia coli, GI1790496, Length=267, Percent_Identity=35.5805243445693, Blast_Score=158, Evalue=1e-39,
Organism=Escherichia coli, GI1786507, Length=261, Percent_Identity=33.7164750957854, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1788502, Length=255, Percent_Identity=33.3333333333333, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=36.2204724409449, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI87081845, Length=241, Percent_Identity=35.6846473029046, Blast_Score=138, Evalue=9e-34,
Organism=Escherichia coli, GI1787055, Length=250, Percent_Identity=33.6, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI1788381, Length=441, Percent_Identity=26.984126984127, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI87082096, Length=439, Percent_Identity=27.5626423690205, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788849, Length=432, Percent_Identity=26.3888888888889, Blast_Score=110, Evalue=4e-25,
Organism=Escherichia coli, GI145693134, Length=174, Percent_Identity=35.632183908046, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI87081881, Length=174, Percent_Identity=36.7816091954023, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI87081977, Length=167, Percent_Identity=35.9281437125749, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1788956, Length=171, Percent_Identity=36.2573099415205, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=34.1317365269461, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1787816, Length=223, Percent_Identity=29.5964125560538, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI87082007, Length=164, Percent_Identity=37.8048780487805, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=8e-17,
Organism=Escherichia coli, GI1787802, Length=168, Percent_Identity=32.7380952380952, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1789650, Length=523, Percent_Identity=23.3269598470363, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1787410, Length=151, Percent_Identity=31.7880794701987, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=29.6969696969697, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 75169; Mature: 75037

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGNLRHYSGEQLLKLEKSRAASLVQIFENSLWTDFRPLLPLARDPAKLKQVAGQPRLRE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHCCCCHHHH
AVIRLMRGTDVIRVKMYALNGITLFSTDASQIGEDESDDDGFRSAAAGTPASELAHNHSI
HHHHHHCCCCEEEEEEEEECCEEEEECCHHHCCCCCCCCCHHHHHCCCCCHHHHHHCCCH
DAFERTLTDRDIISTYVPVHDPAGKIEGVLEIYLDATPFVADSDQQLSWVTLAICALMAV
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHH
LFVAQMLVVRLAGRIIDRQAAALSETNRELDSRVAARTWELANANARLEDEIQERRRAEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RLDHLAHHDPLTGLPNRLLFQKRLSRALSVPDLPPYKLAMLFIDLDRFKDVNDTLGHYIG
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
DQLLNAVAARLADSIRAEDMLARLGGDEFICVLESIENRDMAADVAGKLLALFRQPFCIN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCHHHHHHHHHHHHHCCCCEEC
GNDLYLSASIGISFAGNDGADVDTLLRHADIAMYSAKNAGRNRCQHYSPQMSEDAEQRVV
CCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHH
LERQLRQALDNDEITVHYQPQVDAVTGKLVGAEALARWRHPILGMVPPARFIPVAEECGL
HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHCCC
IVALGEQILEKSLRQLASWHEAGFPLPSVSVNLSARQLERQDFPQHVARLLKRYRLEPRH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCHHHHHHHHHHHHCCCCCE
LELEITESVIMATEDAVNILAELRAQGIRLSIDDFGTGYSSLSYLRQLPVQVLKVDRSFI
EEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHE
LGIGKGGEAIVHAIMALSSSLGLETVAEGVEEASQLEFLRSAGCHIIQGFLYAAPLPAES
EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
FADGWRDRLHAPSSPLQEG
HHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
AGNLRHYSGEQLLKLEKSRAASLVQIFENSLWTDFRPLLPLARDPAKLKQVAGQPRLRE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHCCCCHHHH
AVIRLMRGTDVIRVKMYALNGITLFSTDASQIGEDESDDDGFRSAAAGTPASELAHNHSI
HHHHHHCCCCEEEEEEEEECCEEEEECCHHHCCCCCCCCCHHHHHCCCCCHHHHHHCCCH
DAFERTLTDRDIISTYVPVHDPAGKIEGVLEIYLDATPFVADSDQQLSWVTLAICALMAV
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHH
LFVAQMLVVRLAGRIIDRQAAALSETNRELDSRVAARTWELANANARLEDEIQERRRAEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
RLDHLAHHDPLTGLPNRLLFQKRLSRALSVPDLPPYKLAMLFIDLDRFKDVNDTLGHYIG
HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHH
DQLLNAVAARLADSIRAEDMLARLGGDEFICVLESIENRDMAADVAGKLLALFRQPFCIN
HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCCCCHHHHHHHHHHHHHCCCCEEC
GNDLYLSASIGISFAGNDGADVDTLLRHADIAMYSAKNAGRNRCQHYSPQMSEDAEQRVV
CCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCHHHHHHH
LERQLRQALDNDEITVHYQPQVDAVTGKLVGAEALARWRHPILGMVPPARFIPVAEECGL
HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHCCC
IVALGEQILEKSLRQLASWHEAGFPLPSVSVNLSARQLERQDFPQHVARLLKRYRLEPRH
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHCHHHHHHHHHHHHCCCCCE
LELEITESVIMATEDAVNILAELRAQGIRLSIDDFGTGYSSLSYLRQLPVQVLKVDRSFI
EEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCHHE
LGIGKGGEAIVHAIMALSSSLGLETVAEGVEEASQLEFLRSAGCHIIQGFLYAAPLPAES
EEECCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHH
FADGWRDRLHAPSSPLQEG
HHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]