| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
Click here to switch to the map view.
The map label for this gene is tktB [C]
Identifier: 34497712
GI number: 34497712
Start: 2446018
End: 2447685
Strand: Direct
Name: tktB [C]
Synonym: CV_2257
Alternate gene names: 34497712
Gene position: 2446018-2447685 (Clockwise)
Preceding gene: 34497711
Following gene: 34497713
Centisome position: 51.48
GC content: 61.51
Gene sequence:
>1668_bases CTGAGCGATAGCGAGTATGCGCGTGCGCAGGAAGAAATCGAGGCTGGCCTGGCATTGGCAGATGCGTGCGAGGGCATCAA TGCGCTGGCGGTGGCCATCGCCGGCCGCTTCGAGCCTTTCTATCGTGACGCGCGCTCATGCCTGGAACGCATACACGAGA TCGCCGGCTACGGCACGCTGGCGTCTTGCCTGTCGTCGCTGGATATCGCCGAGGCGCTTTTCAGCGCCGGACTTTGCGAT GCGGCCGGCGTCGCGTCGGAGAATCTGGTGGTAGGGCGGGGCCATATCGCTCCCTTGTTTTATGCTTGCCGGCACCTGAG GCGGGGCATGCCGCTTGCTTTTCTCGCCGCGGTGCACGATAGGGTCCCGGCCGTGGTGAACAAGACCTATGGTTTCCCCT ACGGCATGCGCCATAGCCTGGGTGAGGGGATGGGCATCGCGCTCGGCCGCGCCAAAACCCATAGCGATCAGCGAGTGGTA TGCGTCGCCGGCGATGGTGAATTGAACGAGGGTGTGTCTTACGAGGCCATCCGGCTAGTTGGCGAGCTGGGCATGCGCAA CCTGACGCTGATCGTGGACAGCAACGGAAAGGGCATCGACCCCCTGCCGGGCACGCTCAGGCCCGCTTATCTAGCCGCCT ATTTCGATCGGGTGCGCGAGGTTGATGGCCATGACGCGGACGCCATAGTCGAGAGCATGCGAGACGCGGAGCGCGAGGGC GTGGCAGTCGCCATTATCTGTCATACCCGCAAGGGCTCCCACTCCTTCAAACGCGCAAACGCCAGGCCAGCCATCTCCGC GACTGCCAAGGCCAGCAGCTGCAGCCTGACGGGAGCGTTGATCGAGGAGATGCGTGAAGGCGGCCCTGCCCATATCTTCA CCGCGGATCTGGCCGCGCGTTTCGGGCTCCAGCCATCACACGGCTACTGCAATGTCGGTCTTGCGGAGTCCGCTCTGCTG ACGGCCGCCATGGGCTGCCCGCAGGACGAGCTCAAATTCGTTTTGACCGACGATAAATATTATTTGAATGCAATCGATGT GCTGCATTCCGCCTTGATCGCCTGCCGCAATCTGCATGTGATAGCCGCGCGAAAAAACGGGGTATGGGGCGGTCCCACCT ATGTTCAGAGCGTCTTCGGCTTATTGTTTGACGATGCGGTGTATGAGTTTGCGGACCCTCGCGACCTGCAGGCATGCATC AGGCGGCGGCGGGCGTCGGGAAGCAACGGTCTGTATCTATTGCACGACCAGCCGATGGAGCACGTGCTGGCGATGAGGGA GAAGTACCGCAGGCTTTCCGACGATGTTTACGCCCATCAGCTCGAACATGCGGGGGGCACGGTGGTCCTGTCTTCGGAGT CAATGGCATACGAGGCTTTCCTGGCGGTGGACGGCAAGCGCTGCGCGCATGTCCGGGTGTTGTCAACCAGACCGGATCTG GAGTGTGTGCGCAAGCTGTTGTCGGCTGCGGAGAATGTCGTTGTGGTGGAGCACAACGGTCCCCGTTTCAACCTGGCGGA ATATGTCGAGTCCACGCTGCTCATCAGGGTCAAAAAGATATGCAGCGATGCCTATGAGTGGCCACGGATAGAGACTTTTC AAGCCGCAGCCGCGCCCCGCAAGCTGCGCGCCTTGTTGACAGAGCCTTCTTGCGCTTTAGCCGGCTAG
Upstream 100 bases:
>100_bases GTGCTGAATGAATCGATTAATCACTTGTAAGTCCCCGGTGGATAGCCTGTCAGCACAGCTTTTCGGCATAGACGCCTGCC TGCGGGGACGGCGCTCAGCT
Downstream 100 bases:
>100_bases TCGCCTCGACTTCGCGCTCCGCTTTCCCTTTTCATTGTTTTCCGAATCCCGACAGGGCTTCGGCCACCCTTCTATTAACC GAGGAGTGATGATTCATGAC
Product: hypothetical protein
Products: D-Fructose 6-phosphate; Glyceraldehyde 3-phosphate [C]
Alternate protein names: Transketolase N-Terminal Subunit; Transketolase Domain-Containing Protein; Transketolase N Terminal Section; Transketolase Central Region; Transketolase Domain Protein; Transketolase N- Subunit; Transketolase N Terminal Half; Transaldolase; LigA Protein; Transketolase Subunit A; Transketolase-Like Protein; Transketolase N-Terminal Section
Number of amino acids: Translated: 555; Mature: 554
Protein sequence:
>555_residues MSDSEYARAQEEIEAGLALADACEGINALAVAIAGRFEPFYRDARSCLERIHEIAGYGTLASCLSSLDIAEALFSAGLCD AAGVASENLVVGRGHIAPLFYACRHLRRGMPLAFLAAVHDRVPAVVNKTYGFPYGMRHSLGEGMGIALGRAKTHSDQRVV CVAGDGELNEGVSYEAIRLVGELGMRNLTLIVDSNGKGIDPLPGTLRPAYLAAYFDRVREVDGHDADAIVESMRDAEREG VAVAIICHTRKGSHSFKRANARPAISATAKASSCSLTGALIEEMREGGPAHIFTADLAARFGLQPSHGYCNVGLAESALL TAAMGCPQDELKFVLTDDKYYLNAIDVLHSALIACRNLHVIAARKNGVWGGPTYVQSVFGLLFDDAVYEFADPRDLQACI RRRRASGSNGLYLLHDQPMEHVLAMREKYRRLSDDVYAHQLEHAGGTVVLSSESMAYEAFLAVDGKRCAHVRVLSTRPDL ECVRKLLSAAENVVVVEHNGPRFNLAEYVESTLLIRVKKICSDAYEWPRIETFQAAAAPRKLRALLTEPSCALAG
Sequences:
>Translated_555_residues MSDSEYARAQEEIEAGLALADACEGINALAVAIAGRFEPFYRDARSCLERIHEIAGYGTLASCLSSLDIAEALFSAGLCD AAGVASENLVVGRGHIAPLFYACRHLRRGMPLAFLAAVHDRVPAVVNKTYGFPYGMRHSLGEGMGIALGRAKTHSDQRVV CVAGDGELNEGVSYEAIRLVGELGMRNLTLIVDSNGKGIDPLPGTLRPAYLAAYFDRVREVDGHDADAIVESMRDAEREG VAVAIICHTRKGSHSFKRANARPAISATAKASSCSLTGALIEEMREGGPAHIFTADLAARFGLQPSHGYCNVGLAESALL TAAMGCPQDELKFVLTDDKYYLNAIDVLHSALIACRNLHVIAARKNGVWGGPTYVQSVFGLLFDDAVYEFADPRDLQACI RRRRASGSNGLYLLHDQPMEHVLAMREKYRRLSDDVYAHQLEHAGGTVVLSSESMAYEAFLAVDGKRCAHVRVLSTRPDL ECVRKLLSAAENVVVVEHNGPRFNLAEYVESTLLIRVKKICSDAYEWPRIETFQAAAAPRKLRALLTEPSCALAG >Mature_554_residues SDSEYARAQEEIEAGLALADACEGINALAVAIAGRFEPFYRDARSCLERIHEIAGYGTLASCLSSLDIAEALFSAGLCDA AGVASENLVVGRGHIAPLFYACRHLRRGMPLAFLAAVHDRVPAVVNKTYGFPYGMRHSLGEGMGIALGRAKTHSDQRVVC VAGDGELNEGVSYEAIRLVGELGMRNLTLIVDSNGKGIDPLPGTLRPAYLAAYFDRVREVDGHDADAIVESMRDAEREGV AVAIICHTRKGSHSFKRANARPAISATAKASSCSLTGALIEEMREGGPAHIFTADLAARFGLQPSHGYCNVGLAESALLT AAMGCPQDELKFVLTDDKYYLNAIDVLHSALIACRNLHVIAARKNGVWGGPTYVQSVFGLLFDDAVYEFADPRDLQACIR RRRASGSNGLYLLHDQPMEHVLAMREKYRRLSDDVYAHQLEHAGGTVVLSSESMAYEAFLAVDGKRCAHVRVLSTRPDLE CVRKLLSAAENVVVVEHNGPRFNLAEYVESTLLIRVKKICSDAYEWPRIETFQAAAAPRKLRALLTEPSCALAG
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI133778974, Length=227, Percent_Identity=28.6343612334802, Blast_Score=67, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 2.2.1.1 [C]
Molecular weight: Translated: 60135; Mature: 60004
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDSEYARAQEEIEAGLALADACEGINALAVAIAGRFEPFYRDARSCLERIHEIAGYGTL CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH ASCLSSLDIAEALFSAGLCDAAGVASENLVVGRGHIAPLFYACRHLRRGMPLAFLAAVHD HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH RVPAVVNKTYGFPYGMRHSLGEGMGIALGRAKTHSDQRVVCVAGDGELNEGVSYEAIRLV HCHHHHHHCCCCCCCCHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH GELGMRNLTLIVDSNGKGIDPLPGTLRPAYLAAYFDRVREVDGHDADAIVESMRDAEREG HHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC VAVAIICHTRKGSHSFKRANARPAISATAKASSCSLTGALIEEMREGGPAHIFTADLAAR CEEEEEEECCCCCCHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHH FGLQPSHGYCNVGLAESALLTAAMGCPQDELKFVLTDDKYYLNAIDVLHSALIACRNLHV HCCCCCCCEEECCHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCEEE IAARKNGVWGGPTYVQSVFGLLFDDAVYEFADPRDLQACIRRRRASGSNGLYLLHDQPME EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCHH HVLAMREKYRRLSDDVYAHQLEHAGGTVVLSSESMAYEAFLAVDGKRCAHVRVLSTRPDL HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCH ECVRKLLSAAENVVVVEHNGPRFNLAEYVESTLLIRVKKICSDAYEWPRIETFQAAAAPR HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHH KLRALLTEPSCALAG HHHHHHCCCCCCCCC >Mature Secondary Structure SDSEYARAQEEIEAGLALADACEGINALAVAIAGRFEPFYRDARSCLERIHEIAGYGTL CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHH ASCLSSLDIAEALFSAGLCDAAGVASENLVVGRGHIAPLFYACRHLRRGMPLAFLAAVHD HHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHHHH RVPAVVNKTYGFPYGMRHSLGEGMGIALGRAKTHSDQRVVCVAGDGELNEGVSYEAIRLV HCHHHHHHCCCCCCCCHHHHCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCHHHHHHH GELGMRNLTLIVDSNGKGIDPLPGTLRPAYLAAYFDRVREVDGHDADAIVESMRDAEREG HHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC VAVAIICHTRKGSHSFKRANARPAISATAKASSCSLTGALIEEMREGGPAHIFTADLAAR CEEEEEEECCCCCCHHHHCCCCCCCEECCCCCCCHHHHHHHHHHHCCCCCEEEEHHHHHH FGLQPSHGYCNVGLAESALLTAAMGCPQDELKFVLTDDKYYLNAIDVLHSALIACRNLHV HCCCCCCCEEECCHHHHHHHHHHHCCCHHHCEEEEECCCHHHHHHHHHHHHHHHHCCEEE IAARKNGVWGGPTYVQSVFGLLFDDAVYEFADPRDLQACIRRRRASGSNGLYLLHDQPME EEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCHH HVLAMREKYRRLSDDVYAHQLEHAGGTVVLSSESMAYEAFLAVDGKRCAHVRVLSTRPDL HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEECCCCEEEEEEECCCCCH ECVRKLLSAAENVVVVEHNGPRFNLAEYVESTLLIRVKKICSDAYEWPRIETFQAAAAPR HHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCHH KLRALLTEPSCALAG HHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Thiamine diphosphate, mono-or triphosphate [C]
Metal ions: Mg2+ [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: D-Erythrose 4-phosphate; D-Xylulose 5-phosphate [C]
Specific reaction: D-Erythrose 4-phosphate + D-Xylulose 5-phosphate <==> D-Fructose 6-phosphate + Glyceraldehyde 3-phosphate [C]
General reaction: Keto group transfer [C]
Inhibitor: EDTA; Oxythiamine diphosphate; Phosphate; Rabbit Antibodies; Sulfate [C]
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA