Click here to switch to the map view.

The map label for this gene is yfgB [C]

Identifier: 34497708

GI number: 34497708

Start: 2442265

End: 2443323

Strand: Reverse

Name: yfgB [C]

Synonym: CV_2253

Alternate gene names: 34497708

Gene position: 2443323-2442265 (Counterclockwise)

Preceding gene: 34497722

Following gene: 34497705

Centisome position: 51.43

GC content: 67.42

Gene sequence:

>1059_bases
ATGCATATCCAGGAATTCCATCAAGCCCTCGCCGACATCGGCGCCCGCCCCTGCCACATCGGCCGCATCAACCGCGCCTG
GCTCAAGGGCCTGCCGCTGGACGCCGGCACCCGGCATCAAAAGAGCGAGGATTATTTCCCCTTGTCGGTGCGGGAAGGCT
TGGCGCCGATAGCCGCGCGGATCGAGAAGCTGGCGCGCATACATTCGCGGCATGACGCGGATGACGGCTCGCTGCGTCTG
CTGGTGGGGCTCGGCGACGGCCAGATGGTGGAAAGCGTGCTGCTGCCGCGCGATGGGCTGTGCGTATCCAGCCAGGTGGG
CTGCGCGGTCGGCTGCACGTTCTGCATGACGGGCAAGAGCGGCCTGCTGCGCCAGCTGGGCAGCGCGGAAATCGCCGCGC
AAGTGGCGCTGGCGCGGCGCATCCGCCCAGTGAAGAAAGTGGTGTTCATGGGCATGGGCGAGCCCGCCCACAATATGGAA
AACGTACTGGAGGCCATCCAATGGCTGGGCACCGACGGCAATATCGGCCACAAGAACCTGGTGTTCTCCACCGTGGGCGA
TGCGCGCGTGTTCGAGCGCCTGCCGCAACTGGAGGTGAAGCCGGCGCTGGCCTTGTCGCTGCATACCACCCGCGCCGATC
TGCGCGAACAACTGCTGCCGCGCGCGCCGCGCATCGCCCCGGCTGAATTGGTGGAACTGGGAGAAGCCTACGCCCGCCGC
GTCGGCTATCCCATCCAGTACCAGTGGACCTTGCTCGCGGGCGTCAACGACAGCCAGGAGGAGATGGACGCCGCCGCGCG
CCTGCTGAAGGGCAAGTACGGCGTGCTCAACATCATTCCCTACAACAGCGTGGAGGGCGACCGTTTCCAACGCCCGTCCA
GCGAGCGCGTCCAGGCGATCAAACGCTATCTGCACGACAACGGCGTGTTGACCAAGGTGCGGGACTCCGCCGGCCAGGAC
GTGGACGGGGGCTGCGGCCAACTGCGCGCGCGGGCGGCCCATGTCATCGACGCCAGCCGGCTGCGGCGGCGAGAGCAGGC
CGGCGTGTCAGCCGGCTGA

Upstream 100 bases:

>100_bases
GCGCCCCCCCTCCCAAAGGCGCATGGCTTGCGTTACCCTACGCCCTCGCCTTCCTCGCTCCACCCAGGCGCAGCAGCCTA
CATAACCAATAGTCAGAAGC

Downstream 100 bases:

>100_bases
CCGTCAGCCCTCTAGCCCGGCGTCCCCGTCGGCCCTGCCGCCTGGTAGCGGCGGCGGGTCTTGTTCCTGGCGCTGGCGAT
GCGCCGCAGCGCCCAGCAGG

Product: ribosomal RNA large subunit methyltransferase N

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MHIQEFHQALADIGARPCHIGRINRAWLKGLPLDAGTRHQKSEDYFPLSVREGLAPIAARIEKLARIHSRHDADDGSLRL
LVGLGDGQMVESVLLPRDGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRIRPVKKVVFMGMGEPAHNME
NVLEAIQWLGTDGNIGHKNLVFSTVGDARVFERLPQLEVKPALALSLHTTRADLREQLLPRAPRIAPAELVELGEAYARR
VGYPIQYQWTLLAGVNDSQEEMDAAARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQAIKRYLHDNGVLTKVRDSAGQD
VDGGCGQLRARAAHVIDASRLRRREQAGVSAG

Sequences:

>Translated_352_residues
MHIQEFHQALADIGARPCHIGRINRAWLKGLPLDAGTRHQKSEDYFPLSVREGLAPIAARIEKLARIHSRHDADDGSLRL
LVGLGDGQMVESVLLPRDGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRIRPVKKVVFMGMGEPAHNME
NVLEAIQWLGTDGNIGHKNLVFSTVGDARVFERLPQLEVKPALALSLHTTRADLREQLLPRAPRIAPAELVELGEAYARR
VGYPIQYQWTLLAGVNDSQEEMDAAARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQAIKRYLHDNGVLTKVRDSAGQD
VDGGCGQLRARAAHVIDASRLRRREQAGVSAG
>Mature_352_residues
MHIQEFHQALADIGARPCHIGRINRAWLKGLPLDAGTRHQKSEDYFPLSVREGLAPIAARIEKLARIHSRHDADDGSLRL
LVGLGDGQMVESVLLPRDGLCVSSQVGCAVGCTFCMTGKSGLLRQLGSAEIAAQVALARRIRPVKKVVFMGMGEPAHNME
NVLEAIQWLGTDGNIGHKNLVFSTVGDARVFERLPQLEVKPALALSLHTTRADLREQLLPRAPRIAPAELVELGEAYARR
VGYPIQYQWTLLAGVNDSQEEMDAAARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQAIKRYLHDNGVLTKVRDSAGQD
VDGGCGQLRARAAHVIDASRLRRREQAGVSAG

Specific function: Unknown

COG id: COG0820

COG function: function code R; Predicted Fe-S-cluster redox enzyme

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. RlmN family

Homologues:

Organism=Escherichia coli, GI1788865, Length=293, Percent_Identity=33.7883959044369, Blast_Score=152, Evalue=3e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2253_CHRVO (Q7NVT9)

Other databases:

- EMBL:   AE016825
- RefSeq:   NP_901923.1
- ProteinModelPortal:   Q7NVT9
- GeneID:   2549400
- GenomeReviews:   AE016825_GR
- KEGG:   cvi:CV_2253
- NMPDR:   fig|243365.1.peg.2253
- HOGENOM:   HBG335345
- OMA:   GGCGQLR
- ProtClustDB:   PRK14464
- BioCyc:   CVIO243365:CV_2253-MONOMER
- GO:   GO:0005737
- InterPro:   IPR004383
- PIRSF:   PIRSF006004

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38519; Mature: 38519

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHIQEFHQALADIGARPCHIGRINRAWLKGLPLDAGTRHQKSEDYFPLSVREGLAPIAAR
CCHHHHHHHHHHCCCCCEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
IEKLARIHSRHDADDGSLRLLVGLGDGQMVESVLLPRDGLCVSSQVGCAVGCTFCMTGKS
HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEECCCCCHHHHHHHEECCCH
GLLRQLGSAEIAAQVALARRIRPVKKVVFMGMGEPAHNMENVLEAIQWLGTDGNIGHKNL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCE
VFSTVGDARVFERLPQLEVKPALALSLHTTRADLREQLLPRAPRIAPAELVELGEAYARR
EEECCCHHHHHHHCCCCCCCCHHEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
VGYPIQYQWTLLAGVNDSQEEMDAAARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQAI
CCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHH
KRYLHDNGVLTKVRDSAGQDVDGGCGQLRARAAHVIDASRLRRREQAGVSAG
HHHHHCCCCEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MHIQEFHQALADIGARPCHIGRINRAWLKGLPLDAGTRHQKSEDYFPLSVREGLAPIAAR
CCHHHHHHHHHHCCCCCEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
IEKLARIHSRHDADDGSLRLLVGLGDGQMVESVLLPRDGLCVSSQVGCAVGCTFCMTGKS
HHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHCCCCCCEECCCCCHHHHHHHEECCCH
GLLRQLGSAEIAAQVALARRIRPVKKVVFMGMGEPAHNMENVLEAIQWLGTDGNIGHKNL
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCE
VFSTVGDARVFERLPQLEVKPALALSLHTTRADLREQLLPRAPRIAPAELVELGEAYARR
EEECCCHHHHHHHCCCCCCCCHHEEEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
VGYPIQYQWTLLAGVNDSQEEMDAAARLLKGKYGVLNIIPYNSVEGDRFQRPSSERVQAI
CCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHH
KRYLHDNGVLTKVRDSAGQDVDGGCGQLRARAAHVIDASRLRRREQAGVSAG
HHHHHCCCCEEEEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 14500782