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The map label for this gene is yrbD [H]

Identifier: 34497678

GI number: 34497678

Start: 2398677

End: 2399066

Strand: Direct

Name: yrbD [H]

Synonym: CV_2223

Alternate gene names: 34497678

Gene position: 2398677-2399066 (Clockwise)

Preceding gene: 34497677

Following gene: 34497679

Centisome position: 50.49

GC content: 63.08

Gene sequence:

>390_bases
ATGGAGGAGTTGGTCAACGCCATCAACGGCGTGGTCTGGAGTCCGGCGCTGATTTACCTGTGCCTGGGCGTGGGCCTGTA
TTTTTCGCTGCGCACCCGTTTTCTGCAACTGAGGCATTTCCAGGAAATGCTGCGCCTGATGTTCAACCGCCAGAGCAGCA
GTGCCGGCGTGTCGTCGTTCCAGGCGCTGGCGATGACGCTGGCGGGGAGGGTGGGCACCGGCAATATCGCCGGCGTGGCC
ACCGCCATCACCTTCGGCGGGCCGGGCGCGATGTTCTGGATGTGGCTGGTGGCCTTTCTCGGCGCCAGCTCCGCTTTTGT
CGAATCGACGCTGGGCCAGGTGTACAAGGAGAAGATAGACGGCCAGCGACGTCCCCCCGGTATTGAGTAG

Upstream 100 bases:

>100_bases
TCGAGGCTTTGACCATTATCTTGCGGGTTCCAGTCGGACAATCGGCAGCAGGAATATAAAAACACGCCGATTGCATACCT
TCGCTTACAAAGGAGAACCC

Downstream 100 bases:

>100_bases
CACGTGACTTTAGAGTCCAATCAACCACACACGGAGATTGGATATGAAGAAACGATTCACCGAAGAACAGATCATCGGCT
TCCTGCGCGAAGCCGACGCG

Product: sodium/alanine symporter

Products: Na (I) [Cytoplasm]; L-alanine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MEELVNAINGVVWSPALIYLCLGVGLYFSLRTRFLQLRHFQEMLRLMFNRQSSSAGVSSFQALAMTLAGRVGTGNIAGVA
TAITFGGPGAMFWMWLVAFLGASSAFVESTLGQVYKEKIDGQRRPPGIE

Sequences:

>Translated_129_residues
MEELVNAINGVVWSPALIYLCLGVGLYFSLRTRFLQLRHFQEMLRLMFNRQSSSAGVSSFQALAMTLAGRVGTGNIAGVA
TAITFGGPGAMFWMWLVAFLGASSAFVESTLGQVYKEKIDGQRRPPGIE
>Mature_129_residues
MEELVNAINGVVWSPALIYLCLGVGLYFSLRTRFLQLRHFQEMLRLMFNRQSSSAGVSSFQALAMTLAGRVGTGNIAGVA
TAITFGGPGAMFWMWLVAFLGASSAFVESTLGQVYKEKIDGQRRPPGIE

Specific function: Unknown

COG id: COG1115

COG function: function code E; Na+/alanine symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:alanine (SAF) symporter family [H]

Homologues:

Organism=Escherichia coli, GI1786188, Length=126, Percent_Identity=46.031746031746, Blast_Score=120, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001463 [H]

Pfam domain/function: PF01235 Na_Ala_symp [H]

EC number: NA

Molecular weight: Translated: 14053; Mature: 14053

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS00873 NA_ALANINE_SYMP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEELVNAINGVVWSPALIYLCLGVGLYFSLRTRFLQLRHFQEMLRLMFNRQSSSAGVSSF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
QALAMTLAGRVGTGNIAGVATAITFGGPGAMFWMWLVAFLGASSAFVESTLGQVYKEKID
HHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GQRRPPGIE
CCCCCCCCC
>Mature Secondary Structure
MEELVNAINGVVWSPALIYLCLGVGLYFSLRTRFLQLRHFQEMLRLMFNRQSSSAGVSSF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
QALAMTLAGRVGTGNIAGVATAITFGGPGAMFWMWLVAFLGASSAFVESTLGQVYKEKID
HHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
GQRRPPGIE
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Na (I) [Periplasm]; L-alanine [Periplasm] [C]

Specific reaction: Na (I) [Periplasm] + L-alanine [Periplasm] = Na (I) [Cytoplasm] + L-alanine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]