| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497576
Identifier: 34497576
GI number: 34497576
Start: 2308646
End: 2311441
Strand: Reverse
Name: 34497576
Synonym: CV_2121
Alternate gene names: NA
Gene position: 2311441-2308646 (Counterclockwise)
Preceding gene: 34497578
Following gene: 34497575
Centisome position: 48.65
GC content: 59.62
Gene sequence:
>2796_bases ATGGCCAATGAACTGCTGATCGGGGTAAAAATCGGCGCGGCGCTGTCCGGCACGTTTCAGTCTGCGTTCGCATCGGCACG CGGAACGGCTGCTCGGCTGGGCCAGGTCGCCGACGAGCTGCGTCTCAAGCACAACCGGCTGGGCGATGCGATGGCGCGGG CGATGTCCCACCCCACGCGCAATGTCGCGGAGCTGAAGCGTCAATATGACCGGCTTGGCCTGACCCTGGATCAACTCCGC AGTAAGCAAGAGCGCCTGACAGCCAGTCTGGCGCGGGGCGAAACGCTCAAGGCAAACCGTTCTGAGTTGCGTGGTCAGGC AATGGAGACGGCAGGAACCGCGTTGGCCTTGATGGCGCCAGTGGTCAAGTCGGGCAACGTGGCGATTGATTTCCAGGACC AACTGCGTGATGTCGCCATTACTGGTGAATTTTCGAAGGCAGAGGAAGCCAAGCTCGGCTCAACGATCCGTGATGCTGCA CTCAAGTGGAATCAATTCCAGGATGAGATTGCGCGCGGAACCTCGGTGCTGGTAGCCGGTGGCATCCAGGACGCCAAGGC ATTAGAGAAGTACGCGCCGGTGATGGCCAAGGCGGCTACTGCGACCCGAGCCAGCATGGACGACTTGGGCAGCGTGGCCA TCGCGTTGAAGGACAACCTCAAGGTAGGTGAAGACGGCTTCGAAGGCGCGCTCAATATGCTGGCTTACGCCGGTAAGCGC GGCCAGTTTGAAATTCGAGACATGGCCAAGTGGTTGCCGGCGCTGTCGCCGTCATTCCAAGCGCTCGGGGTCACTGGCAA GGAAGCCGTGGCAGAGATCGGCGCTGCGTTGCAGATTGCTCGCAAGGGGGCTGGCTCAAACGACGAAGCGGCCAACAACT TCAAGAATTTCCTTCAGAAGATCACCGCTCCAGACACGCTAAAAGACTTTGCCAATGCAGGCATTGATCTGAAAGCCAGC ATGATGAATTTGCGCGCACAAGGGCTGTCGCCCGTGCAGTCTATGTTGGCCATCATTACCCAATATATGCAGTCCAAAGG CCCAGAGGCTGCGGGGCAATTTAAACAAGCCATGGCCATTAAAGACGATAAAGAACGAGCAGTAGCGCTTCAGCGTCTGT CTGAGGCTTATAAGCTTGGCGAACTGTTCCAAGACATGCAGGCAATGTCATTTATCCGCCCGGCCATTGCGAATCAGAAA GAAATGAAAGACATCCAGCAGGGTAGCATGGGCGCCGCAGACAAGGGCTTGCTAGACCAGGATTGGAAGAAGCGGATGGA AACCGCGAAGTCCCAGATCGACAAGTTCAAGATTGGTATAACCGAACTGGGACTCACGATAGGCAACACCCTGCTGCCTC CTATTTCTGAGGCGATTGTCGAGATCATGCCGGTTGTGAAGGCATTTGGAGAATGGGCCAAAGCACATCCAGGGGTGATT AAAGGTGTGATCGGCCTAGTAGGCGGCCTCCTCGCCGGCAAGATGGCCTTCATTGGCATCAAGTACGGTATCAATTTGGT CCTGTCGCCGTTCAATGCACTCACCACCTCGATCACTACAGTCTCAGGCAAATGGACTTACTTCAAGGGGCTATGGCAGG CCGGGCGCTTCGCGCCGCTTATTTCTGGACTGCGAAGTGTTGGCGGCGGTGTCATGGCGGTTGGGCGCTTCCTGCTTCCA TTTGGCCGTGGTTTGGCGATGGCCTTCGGTTCGCCTTTGCTGCTGGCCGCGCGCGGTGCGCTGGCGCTGGGCCGTGTGCT GAGCGGGGGCTTGCTGGGCGGTATTCGCCTGGTCGGCCAGGCGGTGCTGTGGCTGGGCCGGGCCGCGATGATGAACCCGA TAGGCCTCGCCGTGATGGCGATAGCCGGCGCGGCTTACCTGATCTATCGGTATTGGACGCCCATAAAGGAGTTCTTCGTC AAAGTATGGTCTGCAGTGGATGCGGCGTTTACCCGTTATCCCATCCTGAATTACCTGGTGCCCATTATTGGCATCCCGCG GCTGATCATCGCCAACTGGAGCCGCATTAAGTCCTTCTTTACCCAAGCGTGGGCCGGAGTCTCCGCCGCTTTCCAGCGCT ACCCGGTGCTGAACTACTTGTTCCTCATCATCGGCATTCCGCGGCTGATCATCGCCAACTGGGGCCGCATCAAGACCTTC TTCAGCGGGCTGTGGGAGAGCGTGAAGCAGTCCATGGCCAGCGCCTGGAGCTGGATGAAAGCCAAGGTGGTCAGCTGGAT CGTGTTTTGGTTGCCGGTGTTCAAGTTTGCCGGTGAACTGCCGGGCAAATTCCTGCAGACGGGCAAAGACCTGGTGATGG GGTTGGTGAACGGCATCAAGTCCAAACTCGGCGCAGCCAAGGACGCCATCCTGGGCTTGGCCACGGACGTCAAAGGCTGG TTCGCCAATACCCTCGGCATTAAGTCGCCATCGCGGGTCTTCATGGGATTCGGCGACAACATCGCCCAGGGCGCGGCCAT CGGCATAGACCGCAGTGCTGCCCACGCCGCGCGCGCGACCGGCGCCATGGCCCGCGCCGCGACCAACGCCTGGGGCAAAC CACAGCTGCGCACGCAGGTTGCGGCCGAGGGGCTGCAGCGCCTGCAAGCGGGTGGCAAAGGCGCGCCTGCAGGCGGCGGA ATGGTGATCCACTTCAGTCCGGTCATCAATGTGCCTGCGGGAGCGCCGGAGGCTGTCAAGGCCGCTGTCCAGTCCGGGCT GCAGCTGTCGATGCATGAGCTGGAGCAGATGATGCGCCGCGTCTGGGCGCAGCAGGAACGGAGGGCCTTCAAATAA
Upstream 100 bases:
>100_bases CAGATGGCTCCGCTGCAGATGACCAGCCAGTAAATGGCTTTGGCGGTAGTGAGGGCGGTTTTTTCAAACATGTTTACAGC ATAGCAAAAGGTCGCATGGC
Downstream 100 bases:
>100_bases TGTTTGCGCTCCTGGGCGAGGTCCAATTCGACCTCATCACCTATTTCGACGGCTTCGAGTCGCAGTTCGGCGCCGACTAT GCCGAGCACGCGCTGATTGA
Product: bacteriophage tail protein
Products: NA
Alternate protein names: Phage Tail Tape Measure Core Region; Phage Tail Protein; Bacteriophage Protein; Pyocin R2_PP Tail Length Determination Protein; Bacteriophage Tail Protein; Phage Tail Tape Measure Protein Core Region; Phage-Related Membrane Protein; Phage-Related Tail Protein; Phage-Related Tail Transmembrane Protein; Prophage; Tail Tape Meausure Protein; Phage-Like Protein; Phage-Encoded Membrane Protein; Phage Minor Tail Protein; Gp29 Bacteriophage Membrane Protein; Bacteriophage-Related Tail Transmembrane Protein; Bacteriophage Membrane Protein; Tail Tape Measure Protein; Phage Tail Tape Measure Protein Family; Phage Tail Tape-Measure Protein; Phage Protein; Phage Tail Length Determination Protein; Bacteriophage Tail Length Determination Protein; Bacteriophage Tail Protein/Phage Tail Tape Measure Protein; Bacteriophage Protein; Tail Tape Measure Core Region
Number of amino acids: Translated: 931; Mature: 930
Protein sequence:
>931_residues MANELLIGVKIGAALSGTFQSAFASARGTAARLGQVADELRLKHNRLGDAMARAMSHPTRNVAELKRQYDRLGLTLDQLR SKQERLTASLARGETLKANRSELRGQAMETAGTALALMAPVVKSGNVAIDFQDQLRDVAITGEFSKAEEAKLGSTIRDAA LKWNQFQDEIARGTSVLVAGGIQDAKALEKYAPVMAKAATATRASMDDLGSVAIALKDNLKVGEDGFEGALNMLAYAGKR GQFEIRDMAKWLPALSPSFQALGVTGKEAVAEIGAALQIARKGAGSNDEAANNFKNFLQKITAPDTLKDFANAGIDLKAS MMNLRAQGLSPVQSMLAIITQYMQSKGPEAAGQFKQAMAIKDDKERAVALQRLSEAYKLGELFQDMQAMSFIRPAIANQK EMKDIQQGSMGAADKGLLDQDWKKRMETAKSQIDKFKIGITELGLTIGNTLLPPISEAIVEIMPVVKAFGEWAKAHPGVI KGVIGLVGGLLAGKMAFIGIKYGINLVLSPFNALTTSITTVSGKWTYFKGLWQAGRFAPLISGLRSVGGGVMAVGRFLLP FGRGLAMAFGSPLLLAARGALALGRVLSGGLLGGIRLVGQAVLWLGRAAMMNPIGLAVMAIAGAAYLIYRYWTPIKEFFV KVWSAVDAAFTRYPILNYLVPIIGIPRLIIANWSRIKSFFTQAWAGVSAAFQRYPVLNYLFLIIGIPRLIIANWGRIKTF FSGLWESVKQSMASAWSWMKAKVVSWIVFWLPVFKFAGELPGKFLQTGKDLVMGLVNGIKSKLGAAKDAILGLATDVKGW FANTLGIKSPSRVFMGFGDNIAQGAAIGIDRSAAHAARATGAMARAATNAWGKPQLRTQVAAEGLQRLQAGGKGAPAGGG MVIHFSPVINVPAGAPEAVKAAVQSGLQLSMHELEQMMRRVWAQQERRAFK
Sequences:
>Translated_931_residues MANELLIGVKIGAALSGTFQSAFASARGTAARLGQVADELRLKHNRLGDAMARAMSHPTRNVAELKRQYDRLGLTLDQLR SKQERLTASLARGETLKANRSELRGQAMETAGTALALMAPVVKSGNVAIDFQDQLRDVAITGEFSKAEEAKLGSTIRDAA LKWNQFQDEIARGTSVLVAGGIQDAKALEKYAPVMAKAATATRASMDDLGSVAIALKDNLKVGEDGFEGALNMLAYAGKR GQFEIRDMAKWLPALSPSFQALGVTGKEAVAEIGAALQIARKGAGSNDEAANNFKNFLQKITAPDTLKDFANAGIDLKAS MMNLRAQGLSPVQSMLAIITQYMQSKGPEAAGQFKQAMAIKDDKERAVALQRLSEAYKLGELFQDMQAMSFIRPAIANQK EMKDIQQGSMGAADKGLLDQDWKKRMETAKSQIDKFKIGITELGLTIGNTLLPPISEAIVEIMPVVKAFGEWAKAHPGVI KGVIGLVGGLLAGKMAFIGIKYGINLVLSPFNALTTSITTVSGKWTYFKGLWQAGRFAPLISGLRSVGGGVMAVGRFLLP FGRGLAMAFGSPLLLAARGALALGRVLSGGLLGGIRLVGQAVLWLGRAAMMNPIGLAVMAIAGAAYLIYRYWTPIKEFFV KVWSAVDAAFTRYPILNYLVPIIGIPRLIIANWSRIKSFFTQAWAGVSAAFQRYPVLNYLFLIIGIPRLIIANWGRIKTF FSGLWESVKQSMASAWSWMKAKVVSWIVFWLPVFKFAGELPGKFLQTGKDLVMGLVNGIKSKLGAAKDAILGLATDVKGW FANTLGIKSPSRVFMGFGDNIAQGAAIGIDRSAAHAARATGAMARAATNAWGKPQLRTQVAAEGLQRLQAGGKGAPAGGG MVIHFSPVINVPAGAPEAVKAAVQSGLQLSMHELEQMMRRVWAQQERRAFK >Mature_930_residues ANELLIGVKIGAALSGTFQSAFASARGTAARLGQVADELRLKHNRLGDAMARAMSHPTRNVAELKRQYDRLGLTLDQLRS KQERLTASLARGETLKANRSELRGQAMETAGTALALMAPVVKSGNVAIDFQDQLRDVAITGEFSKAEEAKLGSTIRDAAL KWNQFQDEIARGTSVLVAGGIQDAKALEKYAPVMAKAATATRASMDDLGSVAIALKDNLKVGEDGFEGALNMLAYAGKRG QFEIRDMAKWLPALSPSFQALGVTGKEAVAEIGAALQIARKGAGSNDEAANNFKNFLQKITAPDTLKDFANAGIDLKASM MNLRAQGLSPVQSMLAIITQYMQSKGPEAAGQFKQAMAIKDDKERAVALQRLSEAYKLGELFQDMQAMSFIRPAIANQKE MKDIQQGSMGAADKGLLDQDWKKRMETAKSQIDKFKIGITELGLTIGNTLLPPISEAIVEIMPVVKAFGEWAKAHPGVIK GVIGLVGGLLAGKMAFIGIKYGINLVLSPFNALTTSITTVSGKWTYFKGLWQAGRFAPLISGLRSVGGGVMAVGRFLLPF GRGLAMAFGSPLLLAARGALALGRVLSGGLLGGIRLVGQAVLWLGRAAMMNPIGLAVMAIAGAAYLIYRYWTPIKEFFVK VWSAVDAAFTRYPILNYLVPIIGIPRLIIANWSRIKSFFTQAWAGVSAAFQRYPVLNYLFLIIGIPRLIIANWGRIKTFF SGLWESVKQSMASAWSWMKAKVVSWIVFWLPVFKFAGELPGKFLQTGKDLVMGLVNGIKSKLGAAKDAILGLATDVKGWF ANTLGIKSPSRVFMGFGDNIAQGAAIGIDRSAAHAARATGAMARAATNAWGKPQLRTQVAAEGLQRLQAGGKGAPAGGGM VIHFSPVINVPAGAPEAVKAAVQSGLQLSMHELEQMMRRVWAQQERRAFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 99847; Mature: 99716
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MANELLIGVKIGAALSGTFQSAFASARGTAARLGQVADELRLKHNRLGDAMARAMSHPTR CCCCEEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NVAELKRQYDRLGLTLDQLRSKQERLTASLARGETLKANRSELRGQAMETAGTALALMAP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VVKSGNVAIDFQDQLRDVAITGEFSKAEEAKLGSTIRDAALKWNQFQDEIARGTSVLVAG HHHCCCEEEEEHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC GIQDAKALEKYAPVMAKAATATRASMDDLGSVAIALKDNLKVGEDGFEGALNMLAYAGKR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC GQFEIRDMAKWLPALSPSFQALGVTGKEAVAEIGAALQIARKGAGSNDEAANNFKNFLQK CCCHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ITAPDTLKDFANAGIDLKASMMNLRAQGLSPVQSMLAIITQYMQSKGPEAAGQFKQAMAI HCCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC KDDKERAVALQRLSEAYKLGELFQDMQAMSFIRPAIANQKEMKDIQQGSMGAADKGLLDQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCH DWKKRMETAKSQIDKFKIGITELGLTIGNTLLPPISEAIVEIMPVVKAFGEWAKAHPGVI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH KGVIGLVGGLLAGKMAFIGIKYGINLVLSPFNALTTSITTVSGKWTYFKGLWQAGRFAPL HHHHHHHHHHHHHHHHHHHHHHCHHHEECCHHHHHHHHHEECCCHHHHHHHHHCCCHHHH ISGLRSVGGGVMAVGRFLLPFGRGLAMAFGSPLLLAARGALALGRVLSGGLLGGIRLVGQ HHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH AVLWLGRAAMMNPIGLAVMAIAGAAYLIYRYWTPIKEFFVKVWSAVDAAFTRYPILNYLV HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PIIGIPRLIIANWSRIKSFFTQAWAGVSAAFQRYPVLNYLFLIIGIPRLIIANWGRIKTF HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHH FSGLWESVKQSMASAWSWMKAKVVSWIVFWLPVFKFAGELPGKFLQTGKDLVMGLVNGIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH SKLGAAKDAILGLATDVKGWFANTLGIKSPSRVFMGFGDNIAQGAAIGIDRSAAHAARAT HHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHCCCCCCCCCHHHHHHHHH GAMARAATNAWGKPQLRTQVAAEGLQRLQAGGKGAPAGGGMVIHFSPVINVPAGAPEAVK HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECEEECCCCCHHHHH AAVQSGLQLSMHELEQMMRRVWAQQERRAFK HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure ANELLIGVKIGAALSGTFQSAFASARGTAARLGQVADELRLKHNRLGDAMARAMSHPTR CCCEEEEEEECCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC NVAELKRQYDRLGLTLDQLRSKQERLTASLARGETLKANRSELRGQAMETAGTALALMAP HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH VVKSGNVAIDFQDQLRDVAITGEFSKAEEAKLGSTIRDAALKWNQFQDEIARGTSVLVAG HHHCCCEEEEEHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC GIQDAKALEKYAPVMAKAATATRASMDDLGSVAIALKDNLKVGEDGFEGALNMLAYAGKR CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHCCCC GQFEIRDMAKWLPALSPSFQALGVTGKEAVAEIGAALQIARKGAGSNDEAANNFKNFLQK CCCHHHHHHHHHHCCCCCCHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH ITAPDTLKDFANAGIDLKASMMNLRAQGLSPVQSMLAIITQYMQSKGPEAAGQFKQAMAI HCCCHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC KDDKERAVALQRLSEAYKLGELFQDMQAMSFIRPAIANQKEMKDIQQGSMGAADKGLLDQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCH DWKKRMETAKSQIDKFKIGITELGLTIGNTLLPPISEAIVEIMPVVKAFGEWAKAHPGVI HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHH KGVIGLVGGLLAGKMAFIGIKYGINLVLSPFNALTTSITTVSGKWTYFKGLWQAGRFAPL HHHHHHHHHHHHHHHHHHHHHHCHHHEECCHHHHHHHHHEECCCHHHHHHHHHCCCHHHH ISGLRSVGGGVMAVGRFLLPFGRGLAMAFGSPLLLAARGALALGRVLSGGLLGGIRLVGQ HHHHHHHCCHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH AVLWLGRAAMMNPIGLAVMAIAGAAYLIYRYWTPIKEFFVKVWSAVDAAFTRYPILNYLV HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH PIIGIPRLIIANWSRIKSFFTQAWAGVSAAFQRYPVLNYLFLIIGIPRLIIANWGRIKTF HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHH FSGLWESVKQSMASAWSWMKAKVVSWIVFWLPVFKFAGELPGKFLQTGKDLVMGLVNGIK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH SKLGAAKDAILGLATDVKGWFANTLGIKSPSRVFMGFGDNIAQGAAIGIDRSAAHAARAT HHHCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHCCCCCCCCCHHHHHHHHH GAMARAATNAWGKPQLRTQVAAEGLQRLQAGGKGAPAGGGMVIHFSPVINVPAGAPEAVK HHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECEEECCCCCHHHHH AAVQSGLQLSMHELEQMMRRVWAQQERRAFK HHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA