| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is ald [H]
Identifier: 34497477
GI number: 34497477
Start: 2203165
End: 2204289
Strand: Direct
Name: ald [H]
Synonym: CV_2022
Alternate gene names: 34497477
Gene position: 2203165-2204289 (Clockwise)
Preceding gene: 34497471
Following gene: 34497478
Centisome position: 46.37
GC content: 66.76
Gene sequence:
>1125_bases ATGTTGATCGGCGTTCCGAAGGAAATCAAAAACCACGAGTACCGCGTGGGTCTGACCCCGTCCGGTGTCCGCGAGCTGGT GGCGAACGGGCACAAGGTGCTGGTGCAGACCCACGCGGGTCTCGCGATAGGCTTTACCGACGAGCAATACATCCAGGCCG GAGCCTCCATCGCCTCCAACGCCGAAGAGGTGTTCGAGCGCGCCGACATGATCGTCAAGGTCAAGGAGCCGCAGCCGGTG GAGTGCAGGATGCTGCGTCCGGGCCAGATTCTTTTCACTTACCTGCATCTGGCGCCGGACCCGGAACAGACCAAGCTGCT GATCGAGTCCGACTCGGTGGCCATCGCCTATGAAACGGTCACCGACGAGCGCGGCGGCCTGCCGCTGTTGGCGCCGATGT CCGAAGTGGCCGGCCGCATGGCGATCCAGGCCGGCGCCCACGCGCTGGAAAAGGCCCAGGGCGGCCGCGGCGTGTTGCTG GGCGGCGTGCCCGGCGTGGCCCCGGCCAAAGTGGTGGTGATAGGCGGCGGCGTGGTGGGGCTCAACGCCGCGCGGATGGC GATGGGGGCGGGCGCAGACGTCACCATCCTGGACAAGTCCCTGAGCCGGCTCAAAGAGATAGACATGGTGTTCGGCGGCC GCATCAAGACGCTGATGTCCAACGGCGCCAATATAGACGACAGCATCCGCGACGCCGACCTGGTGATCGGCGCGGTGCTG GTGCCCGGCGCGGCGGCGCCCAAGCTGGTGACGCGCGCGATGCTGAAGACGATGAAGCCGGGCGCGGTGCTGGTGGATGT GGCGATAGACCAGGGCGGCTGTTTCGAAACCAGCCGGCCGACCACCCACCAGGACCCGATCTACACCGTGGACGGCATCG TCCACTACTGTGTGGCCAATATGCCCGGCGGCGTCGCCCGCACCTCCACCCAGGCGCTGACCAACGCCACGCTGCCGTAT ACGCTGGAGCTGGCCAACAAGGGCTGGCGCCAGGCGCTGCTGGACAACGCCCACCTGCGCAACGGCCTCAACGTCTGCCG CGGGCGGGTTACATACCAGGCGGTGGCCCGCGATTTGGGCCACGCCTACGTCGATCCGATAGAGGCCATCAAGGCCGCAA ACTGA
Upstream 100 bases:
>100_bases TTATAGTCAGAATCAAGTTGAAAGGGCAAGCGCGATGTGAATTTTCTTAAACGGCGTTTGTCTCCCTGATCAGGGCAAAA AAACCAGTTTGGAGGCGACT
Downstream 100 bases:
>100_bases CAAGGAGCGCTGCAAGCCATGTCGCAAGCAATGATAGGCATCCCGTGCGATCTGAAAATGATCGGTCTGTTGCCGTTCCA CGCGGTGGGCGACAAATACA
Product: alanine dehydrogenase
Products: NA
Alternate protein names: Stage V sporulation protein N [H]
Number of amino acids: Translated: 374; Mature: 374
Protein sequence:
>374_residues MLIGVPKEIKNHEYRVGLTPSGVRELVANGHKVLVQTHAGLAIGFTDEQYIQAGASIASNAEEVFERADMIVKVKEPQPV ECRMLRPGQILFTYLHLAPDPEQTKLLIESDSVAIAYETVTDERGGLPLLAPMSEVAGRMAIQAGAHALEKAQGGRGVLL GGVPGVAPAKVVVIGGGVVGLNAARMAMGAGADVTILDKSLSRLKEIDMVFGGRIKTLMSNGANIDDSIRDADLVIGAVL VPGAAAPKLVTRAMLKTMKPGAVLVDVAIDQGGCFETSRPTTHQDPIYTVDGIVHYCVANMPGGVARTSTQALTNATLPY TLELANKGWRQALLDNAHLRNGLNVCRGRVTYQAVARDLGHAYVDPIEAIKAAN
Sequences:
>Translated_374_residues MLIGVPKEIKNHEYRVGLTPSGVRELVANGHKVLVQTHAGLAIGFTDEQYIQAGASIASNAEEVFERADMIVKVKEPQPV ECRMLRPGQILFTYLHLAPDPEQTKLLIESDSVAIAYETVTDERGGLPLLAPMSEVAGRMAIQAGAHALEKAQGGRGVLL GGVPGVAPAKVVVIGGGVVGLNAARMAMGAGADVTILDKSLSRLKEIDMVFGGRIKTLMSNGANIDDSIRDADLVIGAVL VPGAAAPKLVTRAMLKTMKPGAVLVDVAIDQGGCFETSRPTTHQDPIYTVDGIVHYCVANMPGGVARTSTQALTNATLPY TLELANKGWRQALLDNAHLRNGLNVCRGRVTYQAVARDLGHAYVDPIEAIKAAN >Mature_374_residues MLIGVPKEIKNHEYRVGLTPSGVRELVANGHKVLVQTHAGLAIGFTDEQYIQAGASIASNAEEVFERADMIVKVKEPQPV ECRMLRPGQILFTYLHLAPDPEQTKLLIESDSVAIAYETVTDERGGLPLLAPMSEVAGRMAIQAGAHALEKAQGGRGVLL GGVPGVAPAKVVVIGGGVVGLNAARMAMGAGADVTILDKSLSRLKEIDMVFGGRIKTLMSNGANIDDSIRDADLVIGAVL VPGAAAPKLVTRAMLKTMKPGAVLVDVAIDQGGCFETSRPTTHQDPIYTVDGIVHYCVANMPGGVARTSTQALTNATLPY TLELANKGWRQALLDNAHLRNGLNVCRGRVTYQAVARDLGHAYVDPIEAIKAAN
Specific function: This enzyme is a key factor in the assimilation of L- alanine as an energy source through the tricarboxylic acid cycle during sporulation [H]
COG id: COG0686
COG function: function code E; Alanine dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AlaDH/PNT family [H]
Homologues:
Organism=Homo sapiens, GI122939155, Length=342, Percent_Identity=33.0409356725146, Blast_Score=142, Evalue=4e-34, Organism=Homo sapiens, GI122939153, Length=342, Percent_Identity=33.0409356725146, Blast_Score=142, Evalue=4e-34, Organism=Escherichia coli, GI1787887, Length=381, Percent_Identity=31.758530183727, Blast_Score=131, Evalue=6e-32, Organism=Caenorhabditis elegans, GI17550456, Length=344, Percent_Identity=31.6860465116279, Blast_Score=151, Evalue=5e-37,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007698 - InterPro: IPR008142 - InterPro: IPR008143 - InterPro: IPR007886 - InterPro: IPR008141 [H]
Pfam domain/function: PF01262 AlaDh_PNT_C; PF05222 AlaDh_PNT_N [H]
EC number: =1.4.1.1 [H]
Molecular weight: Translated: 39503; Mature: 39503
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLIGVPKEIKNHEYRVGLTPSGVRELVANGHKVLVQTHAGLAIGFTDEQYIQAGASIASN CCCCCCHHHCCCCEEEECCHHHHHHHHHCCCEEEEEECCCEEEECCCHHHHHHCCHHHCC AEEVFERADMIVKVKEPQPVECRMLRPGQILFTYLHLAPDPEQTKLLIESDSVAIAYETV HHHHHHHCCEEEEECCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCEEEEEEEE TDERGGLPLLAPMSEVAGRMAIQAGAHALEKAQGGRGVLLGGVPGVAPAKVVVIGGGVVG CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCEEC LNAARMAMGAGADVTILDKSLSRLKEIDMVFGGRIKTLMSNGANIDDSIRDADLVIGAVL CCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHEEEHHC VPGAAAPKLVTRAMLKTMKPGAVLVDVAIDQGGCFETSRPTTHQDPIYTVDGIVHYCVAN CCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC MPGGVARTSTQALTNATLPYTLELANKGWRQALLDNAHLRNGLNVCRGRVTYQAVARDLG CCCCCHHCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHC HAYVDPIEAIKAAN HHHHCHHHHHHCCC >Mature Secondary Structure MLIGVPKEIKNHEYRVGLTPSGVRELVANGHKVLVQTHAGLAIGFTDEQYIQAGASIASN CCCCCCHHHCCCCEEEECCHHHHHHHHHCCCEEEEEECCCEEEECCCHHHHHHCCHHHCC AEEVFERADMIVKVKEPQPVECRMLRPGQILFTYLHLAPDPEQTKLLIESDSVAIAYETV HHHHHHHCCEEEEECCCCCCEEEEECCCCEEEEEEECCCCCCCCEEEEECCCEEEEEEEE TDERGGLPLLAPMSEVAGRMAIQAGAHALEKAQGGRGVLLGGVPGVAPAKVVVIGGGVVG CCCCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEECCEEC LNAARMAMGAGADVTILDKSLSRLKEIDMVFGGRIKTLMSNGANIDDSIRDADLVIGAVL CCHHHHHHCCCCCEEEHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCCHHHHEEEHHC VPGAAAPKLVTRAMLKTMKPGAVLVDVAIDQGGCFETSRPTTHQDPIYTVDGIVHYCVAN CCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHC MPGGVARTSTQALTNATLPYTLELANKGWRQALLDNAHLRNGLNVCRGRVTYQAVARDLG CCCCCHHCHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHC HAYVDPIEAIKAAN HHHHCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8226620; 9384377 [H]