| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34497393
Identifier: 34497393
GI number: 34497393
Start: 2109386
End: 2110801
Strand: Reverse
Name: 34497393
Synonym: CV_1938
Alternate gene names: NA
Gene position: 2110801-2109386 (Counterclockwise)
Preceding gene: 34497394
Following gene: 34497390
Centisome position: 44.43
GC content: 67.23
Gene sequence:
>1416_bases ATGAGCATCCCCTACGACGACGTGCAAGGCACCATCCTGCGCGGTTACCGGGTGGAGCGCGCCCGGCATTTCATCCTGCG CATCGACGACAAGGCCGGCGCGGCCGGCTTGATCCTCAAACTGGTGGACGGACAGCTGGGACTCCCGCCGATCGCCACTG CCCAGCGCGGCCAGCAAAAACCGGTCCACTTCCTGAACCTCTGCTTCACCCGCGTCGGTTTGTCCCGGCTGGGTCTCAGC GATGCGCAGCTGCAGACTTTCGATGCCTCGTTCTACAAGGGCGCCACGGACCCGGGCATCGCCGCCGGCATCGGGGACTG CGACGACAGCGCCCCGGAACACTGGATAGGCGGCCTGAACGATGGCCAGCAGGTCCATGCGCTGCTCAGCCTGTGGGTGG ACGGCGGCGAAGCGCAGCTGGAGCCGGCATCGGCCACGCTGCGCCGCGCCTTCGCCGCATCCGGCGTGACTGAGCTGTCG GCCCAGGACGCCGTGGCGCTGCCCGACAACCGCGTCCACTTCGGCTACCGCGACAGCATCGCCCAGCCCACCATAGACGG CGCCCCGCCGCGCAAGCGCGACGTCCCGGACGATCAGCCGGTGGTGGCCACCGGCGAATTCCTGCTCGGCTACCTCAACG AAAGCAACGGCCGCTACACGCTGCAACCGGAAGAGCTGTCCCTCAACAGCAGCTTCGCCGCTTTCCGCATCCTGGAACAG GACGTGCCCGGCTTCGAGCGCTTCCTGCAGACCTATGCCGCCCAGCTGGGCATGGATGCCGAAATGCTGGCGGCCAAAGT CTGCGGCCGCTGGCGCAACGGCAATCCGTTGACGCTGATGCCAAGCGACGCCGGCGCCGCGTTGCCGCCGGACCAGCTCA ACGCTTTCCACTATGTCAGCGATGACGTGAACCAGGACGACACGCTGGGCCTGAAGTGTCCGATCGGCTCCCACATCCGC CGCAGCAACCCGCGCGACGGCGGCGTGGTGGGCGCCGGCAGCCCCTCGCACCGCATCGTGCGCCGCGCCATGCCTTACGG GCCGGAATACGACCCGGCCAAGCCGGACCAGCAGAAGCGCGGCCTGATCGGCTATTTCATCAATGCCAGCCTGAGCAACC AGTTCGAGTTCGTCACCAGCCAGTGGGCGCTGGACTCCCATTTCGTCAAATCGGCCACCGGCCCCGGCGGGTCGGAACAA GGCAACGCGGTGTTCAACATCAGCGGAGAGGACGTGTTCCTCGGCGTCAATCACGTGGACCAAAGCTCTTTCACCGACGC ACGGCCCGGCGCCAAGGGACACGGAAACAAGCGCATCACCGGCTTCCCCCGGTTGATCCATACCCGCGGCGGCGCCTACT GCTTCTTCCCCAGCATCAGCGGCCTGCGCTACTTGGCGCGGCTGGCCTCCGGCTGA
Upstream 100 bases:
>100_bases GCCACCGTGCAGACGATCCTAGCCTCCTTGCCCTAAGCGCGGCGAGCCCTCCCCGATGCGGCCGCCCGCGGCTGGCCGCA TCCTTTTTTCCGGAGCGATC
Downstream 100 bases:
>100_bases GGGCAAACAAAACCCCCGCGGCCCATCAGGGCGGCGGGGGCGATGATGCCAGCCGGACAGAATCAGCCGCGGATGCGGCG CAGCACTTCTTCCTTGCCGA
Product: peroxidase
Products: oxidized donor; H2O
Alternate protein names: Dyp-Type Peroxidase Family Protein; Dyp-Type Peroxidase Family; Cytochrome; Dyp-Type Peroxidase; Iron-Dependent Peroxidase-Like Protein; Peroxidase Family Protein; Iron-Dependent Peroxidase; Peroxidase Protein; Peroxidase-Like Protein
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MSIPYDDVQGTILRGYRVERARHFILRIDDKAGAAGLILKLVDGQLGLPPIATAQRGQQKPVHFLNLCFTRVGLSRLGLS DAQLQTFDASFYKGATDPGIAAGIGDCDDSAPEHWIGGLNDGQQVHALLSLWVDGGEAQLEPASATLRRAFAASGVTELS AQDAVALPDNRVHFGYRDSIAQPTIDGAPPRKRDVPDDQPVVATGEFLLGYLNESNGRYTLQPEELSLNSSFAAFRILEQ DVPGFERFLQTYAAQLGMDAEMLAAKVCGRWRNGNPLTLMPSDAGAALPPDQLNAFHYVSDDVNQDDTLGLKCPIGSHIR RSNPRDGGVVGAGSPSHRIVRRAMPYGPEYDPAKPDQQKRGLIGYFINASLSNQFEFVTSQWALDSHFVKSATGPGGSEQ GNAVFNISGEDVFLGVNHVDQSSFTDARPGAKGHGNKRITGFPRLIHTRGGAYCFFPSISGLRYLARLASG
Sequences:
>Translated_471_residues MSIPYDDVQGTILRGYRVERARHFILRIDDKAGAAGLILKLVDGQLGLPPIATAQRGQQKPVHFLNLCFTRVGLSRLGLS DAQLQTFDASFYKGATDPGIAAGIGDCDDSAPEHWIGGLNDGQQVHALLSLWVDGGEAQLEPASATLRRAFAASGVTELS AQDAVALPDNRVHFGYRDSIAQPTIDGAPPRKRDVPDDQPVVATGEFLLGYLNESNGRYTLQPEELSLNSSFAAFRILEQ DVPGFERFLQTYAAQLGMDAEMLAAKVCGRWRNGNPLTLMPSDAGAALPPDQLNAFHYVSDDVNQDDTLGLKCPIGSHIR RSNPRDGGVVGAGSPSHRIVRRAMPYGPEYDPAKPDQQKRGLIGYFINASLSNQFEFVTSQWALDSHFVKSATGPGGSEQ GNAVFNISGEDVFLGVNHVDQSSFTDARPGAKGHGNKRITGFPRLIHTRGGAYCFFPSISGLRYLARLASG >Mature_470_residues SIPYDDVQGTILRGYRVERARHFILRIDDKAGAAGLILKLVDGQLGLPPIATAQRGQQKPVHFLNLCFTRVGLSRLGLSD AQLQTFDASFYKGATDPGIAAGIGDCDDSAPEHWIGGLNDGQQVHALLSLWVDGGEAQLEPASATLRRAFAASGVTELSA QDAVALPDNRVHFGYRDSIAQPTIDGAPPRKRDVPDDQPVVATGEFLLGYLNESNGRYTLQPEELSLNSSFAAFRILEQD VPGFERFLQTYAAQLGMDAEMLAAKVCGRWRNGNPLTLMPSDAGAALPPDQLNAFHYVSDDVNQDDTLGLKCPIGSHIRR SNPRDGGVVGAGSPSHRIVRRAMPYGPEYDPAKPDQQKRGLIGYFINASLSNQFEFVTSQWALDSHFVKSATGPGGSEQG NAVFNISGEDVFLGVNHVDQSSFTDARPGAKGHGNKRITGFPRLIHTRGGAYCFFPSISGLRYLARLASG
Specific function: Unknown
COG id: COG2837
COG function: function code P; Predicted iron-dependent peroxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.11.1.7
Molecular weight: Translated: 50804; Mature: 50673
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIPYDDVQGTILRGYRVERARHFILRIDDKAGAAGLILKLVDGQLGLPPIATAQRGQQK CCCCCCCCCCCEECCEECCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHCCCCCC PVHFLNLCFTRVGLSRLGLSDAQLQTFDASFYKGATDPGIAAGIGDCDDSAPEHWIGGLN CHHHHHHHHHHHHHHHCCCCCCHHEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCC DGQQVHALLSLWVDGGEAQLEPASATLRRAFAASGVTELSAQDAVALPDNRVHFGYRDSI CHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCHHHCCCCCEECCCCCEECCHHHCC AQPTIDGAPPRKRDVPDDQPVVATGEFLLGYLNESNGRYTLQPEELSLNSSFAAFRILEQ CCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCEEEECHHHCCCCCCHHHHHHHHH DVPGFERFLQTYAAQLGMDAEMLAAKVCGRWRNGNPLTLMPSDAGAALPPDQLNAFHYVS CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCCEEEEEC DDVNQDDTLGLKCPIGSHIRRSNPRDGGVVGAGSPSHRIVRRAMPYGPEYDPAKPDQQKR CCCCCCCCEEEECCCCHHHHCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHC GLIGYFINASLSNQFEFVTSQWALDSHFVKSATGPGGSEQGNAVFNISGEDVFLGVNHVD CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCC QSSFTDARPGAKGHGNKRITGFPRLIHTRGGAYCFFPSISGLRYLARLASG CCCCCCCCCCCCCCCCCEEECCCHHEECCCCCEEECCCHHHHHHHHHHHCC >Mature Secondary Structure SIPYDDVQGTILRGYRVERARHFILRIDDKAGAAGLILKLVDGQLGLPPIATAQRGQQK CCCCCCCCCCEECCEECCCEEEEEEEEECCCCCCEEEEEEECCCCCCCCCCHHCCCCCC PVHFLNLCFTRVGLSRLGLSDAQLQTFDASFYKGATDPGIAAGIGDCDDSAPEHWIGGLN CHHHHHHHHHHHHHHHCCCCCCHHEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCC DGQQVHALLSLWVDGGEAQLEPASATLRRAFAASGVTELSAQDAVALPDNRVHFGYRDSI CHHHHHHHHHHHCCCCCCEECHHHHHHHHHHHHCCCHHHCCCCCEECCCCCEECCHHHCC AQPTIDGAPPRKRDVPDDQPVVATGEFLLGYLNESNGRYTLQPEELSLNSSFAAFRILEQ CCCCCCCCCCCCCCCCCCCCEEEECCEEEEEEECCCCEEEECHHHCCCCCCHHHHHHHHH DVPGFERFLQTYAAQLGMDAEMLAAKVCGRWRNGNPLTLMPSDAGAALPPDQLNAFHYVS CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHCCEEEEEC DDVNQDDTLGLKCPIGSHIRRSNPRDGGVVGAGSPSHRIVRRAMPYGPEYDPAKPDQQKR CCCCCCCCEEEECCCCHHHHCCCCCCCCEEECCCCHHHHHHHHCCCCCCCCCCCCCHHHC GLIGYFINASLSNQFEFVTSQWALDSHFVKSATGPGGSEQGNAVFNISGEDVFLGVNHVD CEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCC QSSFTDARPGAKGHGNKRITGFPRLIHTRGGAYCFFPSISGLRYLARLASG CCCCCCCCCCCCCCCCCEEECCCHHEECCCCCEEECCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: donor; H2O2
Specific reaction: donor + H2O2 = oxidized donor + 2 H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA