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The map label for this gene is yjiR [H]

Identifier: 34497390

GI number: 34497390

Start: 2105571

End: 2106998

Strand: Reverse

Name: yjiR [H]

Synonym: CV_1935

Alternate gene names: 34497390

Gene position: 2106998-2105571 (Counterclockwise)

Preceding gene: 34497393

Following gene: 34497389

Centisome position: 44.35

GC content: 67.79

Gene sequence:

>1428_bases
ATGAGCGGCGAAACGCTGTACCAGCAGCTGGTCAACGAATGGATGGAGCTGATCCGGAACGGCACCGTGCGCCCGGGCGA
ACGACTGCCTTCGGTGCGCAAGGCCTGCGCGATGCACAAGGTCAGCCCGTCGACCATTCTGCAGACTTACCGCATGCTGG
AAGACCGCGGCCTGATCGAAGCCCGGCCGCAGTCGGGCTTCTACGTCAAATCGGCCGCCAGCCTGCCGCTGCCGCGGATG
CGCCGCCAGAGCGCCGCCCACCACACCGGCGAGGTGGTGGACCAGATCGAGGCGGTGATGGGCGTGCAGAGCCAGGCCGA
TTTCATCGACCTGGCTCTGGCCAGCCCGCGCGGCAGCGACTTCTACCCCACCACCCGCTTCAAGCACATCATGGGGCGGC
TGCTGCGCCAGCACCCGGAGCTGACCACCGACTACCCTTTCCCGCCGGGCTCGGAGCGGCTGCGGCGGCAGATCGCCCAG
CGCGCGGTCAACTGGGGCTGCGTGCTGGCCGCGGACGAGCTGGTGATCAGCAACGGCTGCACCGAAGCGCTGCAACTGGC
GCTCAGGGCCGTTTGCAAGCCGGGCGACACCGTGGGCGTGGAGTCGCCCACCTATTTCGCGCTGCTGCCGATGCTGAAGG
ATCTGGGCCTGGCGGTGATCGAAATCCCCACCCACCCCACCAGCGGCCTGGCGCTGGACGCGCTGGAACTGCTGTTGTCC
GAAAAGCGGCTGAACGCCGTCGTCGCCATGCCCACCGTGCACAATCCGCTGGGCAGCACCATGCCGCCAGAGGCGAAACG
GCGGCTGGCGCAGCTGGTCAACGACTACCAGGTGCCGCTGATCGAGGACGTTCCGCACGCCGAGCTGTTTTACGGCGCCT
CGACGCCGGACGCGGTCAAGGCTTACGACCGCGACGGCTGGGTCTTGCTGTGCTCCAGCTACAGCAAGACGCTGGCGCCG
GGCTTCCGCATAGGCTGGATCGCGCCGGGACGCTTCCTCAGCGAGGTGCGCCGGCTGAAATTCTCCAGCAGCCTGGGCCA
GCCGGCGCTATTGGAGGAAACTCTGGCCGAATACCTGGAAAGCGGCGGCTACGACCACCACCTGCGGCTGCTCCGCCGCC
ACTTCATCAGCCAGATGGAAAAACTGCGCGGCGCGGTGGCCCAGCACTTCCCGGACGGCACCCGCGCCACCCTGCCCTCC
GGCGGTTGCCTGCTGTGGGTGGAACTGCCCAGCCACGCCGACACCATGCAGTTGTTCCGCGCCGCGCTGGCCGAACGCAT
CACTGTGGTGCCGGGCGCGATGTATTCGGCCAAAGGCCGCTACCGCAACTGCCTGCGGCTGTCGTGCTGCTATCCATGGA
ACGAGGCCTACCAACGCGCGCTGATCCGGGTGGGCGAGCTGGCGGGCGAACTGGCAGAAGGCCATTAG

Upstream 100 bases:

>100_bases
ATAACAGTTTTGAATTGATCAAACTGTTACGGTCGGTTTCGTCCAAAACTGTACCGACATCCGATTTTTCTGTACCCCAC
TCCAAGACGAGGAGCCCCGC

Downstream 100 bases:

>100_bases
AACGGACAGTCATATCCAGTATGATTTTTATGTCCTTGTGATCGACAGCCGGCGGCGCTAAGGTAGACAGCCATGACAAA
CGCCTGACCAGGAGCCGCCA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 475; Mature: 474

Protein sequence:

>475_residues
MSGETLYQQLVNEWMELIRNGTVRPGERLPSVRKACAMHKVSPSTILQTYRMLEDRGLIEARPQSGFYVKSAASLPLPRM
RRQSAAHHTGEVVDQIEAVMGVQSQADFIDLALASPRGSDFYPTTRFKHIMGRLLRQHPELTTDYPFPPGSERLRRQIAQ
RAVNWGCVLAADELVISNGCTEALQLALRAVCKPGDTVGVESPTYFALLPMLKDLGLAVIEIPTHPTSGLALDALELLLS
EKRLNAVVAMPTVHNPLGSTMPPEAKRRLAQLVNDYQVPLIEDVPHAELFYGASTPDAVKAYDRDGWVLLCSSYSKTLAP
GFRIGWIAPGRFLSEVRRLKFSSSLGQPALLEETLAEYLESGGYDHHLRLLRRHFISQMEKLRGAVAQHFPDGTRATLPS
GGCLLWVELPSHADTMQLFRAALAERITVVPGAMYSAKGRYRNCLRLSCCYPWNEAYQRALIRVGELAGELAEGH

Sequences:

>Translated_475_residues
MSGETLYQQLVNEWMELIRNGTVRPGERLPSVRKACAMHKVSPSTILQTYRMLEDRGLIEARPQSGFYVKSAASLPLPRM
RRQSAAHHTGEVVDQIEAVMGVQSQADFIDLALASPRGSDFYPTTRFKHIMGRLLRQHPELTTDYPFPPGSERLRRQIAQ
RAVNWGCVLAADELVISNGCTEALQLALRAVCKPGDTVGVESPTYFALLPMLKDLGLAVIEIPTHPTSGLALDALELLLS
EKRLNAVVAMPTVHNPLGSTMPPEAKRRLAQLVNDYQVPLIEDVPHAELFYGASTPDAVKAYDRDGWVLLCSSYSKTLAP
GFRIGWIAPGRFLSEVRRLKFSSSLGQPALLEETLAEYLESGGYDHHLRLLRRHFISQMEKLRGAVAQHFPDGTRATLPS
GGCLLWVELPSHADTMQLFRAALAERITVVPGAMYSAKGRYRNCLRLSCCYPWNEAYQRALIRVGELAGELAEGH
>Mature_474_residues
SGETLYQQLVNEWMELIRNGTVRPGERLPSVRKACAMHKVSPSTILQTYRMLEDRGLIEARPQSGFYVKSAASLPLPRMR
RQSAAHHTGEVVDQIEAVMGVQSQADFIDLALASPRGSDFYPTTRFKHIMGRLLRQHPELTTDYPFPPGSERLRRQIAQR
AVNWGCVLAADELVISNGCTEALQLALRAVCKPGDTVGVESPTYFALLPMLKDLGLAVIEIPTHPTSGLALDALELLLSE
KRLNAVVAMPTVHNPLGSTMPPEAKRRLAQLVNDYQVPLIEDVPHAELFYGASTPDAVKAYDRDGWVLLCSSYSKTLAPG
FRIGWIAPGRFLSEVRRLKFSSSLGQPALLEETLAEYLESGGYDHHLRLLRRHFISQMEKLRGAVAQHFPDGTRATLPSG
GCLLWVELPSHADTMQLFRAALAERITVVPGAMYSAKGRYRNCLRLSCCYPWNEAYQRALIRVGELAGELAEGH

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=280, Percent_Identity=23.5714285714286, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI33469970, Length=280, Percent_Identity=23.5714285714286, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI1790797, Length=466, Percent_Identity=36.2660944206009, Blast_Score=307, Evalue=8e-85,
Organism=Escherichia coli, GI1787710, Length=468, Percent_Identity=35.042735042735, Blast_Score=285, Evalue=4e-78,
Organism=Caenorhabditis elegans, GI17567663, Length=335, Percent_Identity=22.6865671641791, Blast_Score=70, Evalue=3e-12,
Organism=Drosophila melanogaster, GI21356535, Length=351, Percent_Identity=24.7863247863248, Blast_Score=95, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 52720; Mature: 52589

Theoretical pI: Translated: 8.16; Mature: 8.16

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGETLYQQLVNEWMELIRNGTVRPGERLPSVRKACAMHKVSPSTILQTYRMLEDRGLIE
CCHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
ARPQSGFYVKSAASLPLPRMRRQSAAHHTGEVVDQIEAVMGVQSQADFIDLALASPRGSD
ECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
FYPTTRFKHIMGRLLRQHPELTTDYPFPPGSERLRRQIAQRAVNWGCVLAADELVISNGC
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHCCC
TEALQLALRAVCKPGDTVGVESPTYFALLPMLKDLGLAVIEIPTHPTSGLALDALELLLS
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHH
EKRLNAVVAMPTVHNPLGSTMPPEAKRRLAQLVNDYQVPLIEDVPHAELFYGASTPDAVK
HHHHCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHH
AYDRDGWVLLCSSYSKTLAPGFRIGWIAPGRFLSEVRRLKFSSSLGQPALLEETLAEYLE
HCCCCCCEEEECCCCHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SGGYDHHLRLLRRHFISQMEKLRGAVAQHFPDGTRATLPSGGCLLWVELPSHADTMQLFR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHH
AALAERITVVPGAMYSAKGRYRNCLRLSCCYPWNEAYQRALIRVGELAGELAEGH
HHHHHHHHHCCCCHHHCCCHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SGETLYQQLVNEWMELIRNGTVRPGERLPSVRKACAMHKVSPSTILQTYRMLEDRGLIE
CHHHHHHHHHHHHHHHHHCCCCCCHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
ARPQSGFYVKSAASLPLPRMRRQSAAHHTGEVVDQIEAVMGVQSQADFIDLALASPRGSD
ECCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
FYPTTRFKHIMGRLLRQHPELTTDYPFPPGSERLRRQIAQRAVNWGCVLAADELVISNGC
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHHHHCCC
TEALQLALRAVCKPGDTVGVESPTYFALLPMLKDLGLAVIEIPTHPTSGLALDALELLLS
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHH
EKRLNAVVAMPTVHNPLGSTMPPEAKRRLAQLVNDYQVPLIEDVPHAELFYGASTPDAVK
HHHHCEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCHHHH
AYDRDGWVLLCSSYSKTLAPGFRIGWIAPGRFLSEVRRLKFSSSLGQPALLEETLAEYLE
HCCCCCCEEEECCCCHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
SGGYDHHLRLLRRHFISQMEKLRGAVAQHFPDGTRATLPSGGCLLWVELPSHADTMQLFR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHH
AALAERITVVPGAMYSAKGRYRNCLRLSCCYPWNEAYQRALIRVGELAGELAEGH
HHHHHHHHHCCCCHHHCCCHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]