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The map label for this gene is yrdC [H]

Identifier: 34497357

GI number: 34497357

Start: 2067943

End: 2068494

Strand: Direct

Name: yrdC [H]

Synonym: CV_1902

Alternate gene names: 34497357

Gene position: 2067943-2068494 (Clockwise)

Preceding gene: 34497356

Following gene: 34497358

Centisome position: 43.53

GC content: 64.31

Gene sequence:

>552_bases
ATGAAAAAGACCGCATTGCTGGTGATTGATGTCCAGGATTCCTTTCTGCACCGCCCGTACTGGGACGAGCGCGAGCTGCC
CGCCTATCGGGACGCGCAACTGAGGCTGATCGCCGGCGCCGAGGCGAGCGGGGTGCCTGTCGTCAACATTCTCCATACCG
ACGACGACGAGGCCTTCCGGCTGGAGTCCGGGCTGGTCAAGCCGCAGTCCTGGCTGAAACACCGGCCGGCGGCGTCTTTC
GTCAAGCATGTGCACAATGCGCTGACCGATTCCGGCCTGCAGGACTGGCTGATCAAGCATGGCATCCAGAAGCTGGTGAT
TTCCGGCATCCGCACCGAGCAGTGTTGCGAAACCACCACCCGCGTGGCCTCAGACTTGGGCTACGAGGTGGATTTCGTCA
CCGAGGCGACCTTGACCTTTCCGATGACCCATGCGGGCAGCGGCGCGGTCTACAGCGCCGCCGACATCCGCGCCCGCACC
GAGCTGGTGCTGGCCGGGCGCTTCGCGACCATCGTCACGGTGGAAGAGGCCCTGCGGCGGATGGCGGATTAA

Upstream 100 bases:

>100_bases
GATGTCCTTTTCTGGCAGGGGCTTGTCCGGAGATGGCCTTATTTGCTGGCCATATCCGCCATACGATGCTGTCCATATCC
ACACCGCCGGGGGAGGCGAA

Downstream 100 bases:

>100_bases
GAGCGGCCAACAGCATTCCTGATGCGGCGCTGCGCCGGCTTGTCGTACCCAAGTACGGCCTGCGTCGGCGCGCCTTGCCT
CTGCCGTGAAACTGATTTTT

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 183

Protein sequence:

>183_residues
MKKTALLVIDVQDSFLHRPYWDERELPAYRDAQLRLIAGAEASGVPVVNILHTDDDEAFRLESGLVKPQSWLKHRPAASF
VKHVHNALTDSGLQDWLIKHGIQKLVISGIRTEQCCETTTRVASDLGYEVDFVTEATLTFPMTHAGSGAVYSAADIRART
ELVLAGRFATIVTVEEALRRMAD

Sequences:

>Translated_183_residues
MKKTALLVIDVQDSFLHRPYWDERELPAYRDAQLRLIAGAEASGVPVVNILHTDDDEAFRLESGLVKPQSWLKHRPAASF
VKHVHNALTDSGLQDWLIKHGIQKLVISGIRTEQCCETTTRVASDLGYEVDFVTEATLTFPMTHAGSGAVYSAADIRART
ELVLAGRFATIVTVEEALRRMAD
>Mature_183_residues
MKKTALLVIDVQDSFLHRPYWDERELPAYRDAQLRLIAGAEASGVPVVNILHTDDDEAFRLESGLVKPQSWLKHRPAASF
VKHVHNALTDSGLQDWLIKHGIQKLVISGIRTEQCCETTTRVASDLGYEVDFVTEATLTFPMTHAGSGAVYSAADIRART
ELVLAGRFATIVTVEEALRRMAD

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20329; Mature: 20329

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTALLVIDVQDSFLHRPYWDERELPAYRDAQLRLIAGAEASGVPVVNILHTDDDEAFR
CCCEEEEEEECCHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEE
LESGLVKPQSWLKHRPAASFVKHVHNALTDSGLQDWLIKHGIQKLVISGIRTEQCCETTT
HHCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RVASDLGYEVDFVTEATLTFPMTHAGSGAVYSAADIRARTELVLAGRFATIVTVEEALRR
HHHHHCCCEEEEEEECEEEEEECCCCCCCEEEHHHHHHHHHEEEECCHHHHHHHHHHHHH
MAD
HCC
>Mature Secondary Structure
MKKTALLVIDVQDSFLHRPYWDERELPAYRDAQLRLIAGAEASGVPVVNILHTDDDEAFR
CCCEEEEEEECCHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEECCCCCCEE
LESGLVKPQSWLKHRPAASFVKHVHNALTDSGLQDWLIKHGIQKLVISGIRTEQCCETTT
HHCCCCCCHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
RVASDLGYEVDFVTEATLTFPMTHAGSGAVYSAADIRARTELVLAGRFATIVTVEEALRR
HHHHHCCCEEEEEEECEEEEEECCCCCCCEEEHHHHHHHHHEEEECCHHHHHHHHHHHHH
MAD
HCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377; 9287000 [H]