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The map label for this gene is ycdI [C]

Identifier: 34497268

GI number: 34497268

Start: 1970933

End: 1971523

Strand: Reverse

Name: ycdI [C]

Synonym: CV_1813

Alternate gene names: 34497268

Gene position: 1971523-1970933 (Counterclockwise)

Preceding gene: 34497269

Following gene: 34497267

Centisome position: 41.5

GC content: 67.01

Gene sequence:

>591_bases
ATGAGCACTCCCCTCTCCCACGCCACGCTGGAACAGCTGTTCCTGAACGCCCGCACCCACAGCCACTGGCAACCGCGTCC
GGTGAGCGACGAGCTGCTGCACCAGCTGCACGAGCTGCTGAAACAGGCGCCCACCAGCGCCAACTGCTCGCCGGCCCGCT
TCGTGTTCGTCAAGAGCGAAGCGGCCAAGGCCAAGCTGAAACCCTGCCTGGCCGCCGGCAACGTCGACAAGACCATGGCC
GCGCCGGTCTGCGTGATCGTCGCCCATGACACGCGCTTCTACGAGCATCTGCCCCAGCTGTTCCCGCACGCGGACGCCAA
GAGCTGGTTCGAGGGCAACCAGCCGCTGATCGATACCACCGCCTTCCGCAACGGCACGCTGCAAGGCGCCTACCTGATCC
TGGCCGCGCGCTCGCTGGGCCTGGATTGCGGCCCGATGTCCGGCTTCGACAACGCCGCCGTGGACGCCGCCTTCTTCCCG
GACGGGCGCGTCAAGTCCAACTTCCTGATCAACCTGGGCTACGGCGAAGCCGACAAGCTGTTCCCGCGCTCGCCCCGCTT
CGGCTTCGACGAGGCCTGCCAGATCCTGTAA

Upstream 100 bases:

>100_bases
CCGTCCAGGCGAATACCTTCGAGGAACCTGCCGCCGAAAACGCCGCCCCTGCCGCCAAGGCGCCAGGCAACCATACCCCC
ACCCCAACCGAGGTAAGACC

Downstream 100 bases:

>100_bases
ACAGACGATTGCCGCTGGCCTGATCCCAATGCCCGGTTATAATGCCGGGCATTTGTCTGCCCGGAGAATGCCATGCTGTA
CCCGCTGCTGCGCCCGCTGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSTPLSHATLEQLFLNARTHSHWQPRPVSDELLHQLHELLKQAPTSANCSPARFVFVKSEAAKAKLKPCLAAGNVDKTMA
APVCVIVAHDTRFYEHLPQLFPHADAKSWFEGNQPLIDTTAFRNGTLQGAYLILAARSLGLDCGPMSGFDNAAVDAAFFP
DGRVKSNFLINLGYGEADKLFPRSPRFGFDEACQIL

Sequences:

>Translated_196_residues
MSTPLSHATLEQLFLNARTHSHWQPRPVSDELLHQLHELLKQAPTSANCSPARFVFVKSEAAKAKLKPCLAAGNVDKTMA
APVCVIVAHDTRFYEHLPQLFPHADAKSWFEGNQPLIDTTAFRNGTLQGAYLILAARSLGLDCGPMSGFDNAAVDAAFFP
DGRVKSNFLINLGYGEADKLFPRSPRFGFDEACQIL
>Mature_195_residues
STPLSHATLEQLFLNARTHSHWQPRPVSDELLHQLHELLKQAPTSANCSPARFVFVKSEAAKAKLKPCLAAGNVDKTMAA
PVCVIVAHDTRFYEHLPQLFPHADAKSWFEGNQPLIDTTAFRNGTLQGAYLILAARSLGLDCGPMSGFDNAAVDAAFFPD
GRVKSNFLINLGYGEADKLFPRSPRFGFDEACQIL

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787243, Length=196, Percent_Identity=54.5918367346939, Blast_Score=234, Evalue=4e-63,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21523; Mature: 21392

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPLSHATLEQLFLNARTHSHWQPRPVSDELLHQLHELLKQAPTSANCSPARFVFVKSE
CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
AAKAKLKPCLAAGNVDKTMAAPVCVIVAHDTRFYEHLPQLFPHADAKSWFEGNQPLIDTT
HHHHHHHHHHHCCCCCCHHHCCEEEEEECCHHHHHHHHHHCCCCCCHHHHCCCCCEEEEC
AFRNGTLQGAYLILAARSLGLDCGPMSGFDNAAVDAAFFPDGRVKSNFLINLGYGEADKL
CCCCCCCCHHHEEEEHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCHHC
FPRSPRFGFDEACQIL
CCCCCCCCHHHHHHCC
>Mature Secondary Structure 
STPLSHATLEQLFLNARTHSHWQPRPVSDELLHQLHELLKQAPTSANCSPARFVFVKSE
CCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEEECC
AAKAKLKPCLAAGNVDKTMAAPVCVIVAHDTRFYEHLPQLFPHADAKSWFEGNQPLIDTT
HHHHHHHHHHHCCCCCCHHHCCEEEEEECCHHHHHHHHHHCCCCCCHHHHCCCCCEEEEC
AFRNGTLQGAYLILAARSLGLDCGPMSGFDNAAVDAAFFPDGRVKSNFLINLGYGEADKL
CCCCCCCCHHHEEEEHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCHHC
FPRSPRFGFDEACQIL
CCCCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA