Click here to switch to the map view.

The map label for this gene is pecS [H]

Identifier: 34497231

GI number: 34497231

Start: 1932237

End: 1932749

Strand: Reverse

Name: pecS [H]

Synonym: CV_1776

Alternate gene names: 34497231

Gene position: 1932749-1932237 (Counterclockwise)

Preceding gene: 34497233

Following gene: 34497230

Centisome position: 40.68

GC content: 66.67

Gene sequence:

>513_bases
ATGAGCGATGCCAGAGGCGGCGACGCGGTGGACCGCATACTCGAACAGTGGGCGCGCGAGCGGCCGGACCTGGATGTCAG
TCCGATGGGGGTGATAGGCCGGCTCAGCCGCTGCGCCGCGCTGTTGTCGCAACGGCTGGACGAGGTGTTCGCCGAATACG
GACTCAGCGGCTGGGAGTTCGACGTGCTGGCCACACTGCGCCGCGCCGGCGCGCCCTACCAGCTGGCGCCGACAGAATTG
TTCTCGTCGCTGATGGTCACTTCGGGCACCATGACCCACAGGCTTAAAGTTTTGGAAGGCAAGGGCTGGATCGTGCGCGA
AGCCAGCAGCCAGGACGCCCGCAGCACGCTGGTGAGATTGAGCGGGGAAGGTTTCGCCTTGGTGGAGCGCGCGCTGGAAG
GCCATGTCGTCAACGAGCACGCGATATTGTCCGCGCTGCCGGCGCGCAGCGTAGACGCGCTGGAAAAACGGCTGGCCGAA
CTGCTGGCGGCGTTGGAGGCACCGCGCGGCTGA

Upstream 100 bases:

>100_bases
TTCGGGGTTTATAATCCCGATCACAGTTAACTTGAATTCAAGATAACATTTATCTCGAATTCAAGGCAAATAAATCTTGA
ATTCAAGACAAGGAGACGGC

Downstream 100 bases:

>100_bases
TCCGGTTTATTTCAGATAATGGAATAATCCATTGTCCTTGACGGCGATTCAGCTTTTAACCGCCATCAGGCAAAGTCGTG
GCCGTGTTCCGCTTCCGCCA

Product: MarR family regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MSDARGGDAVDRILEQWARERPDLDVSPMGVIGRLSRCAALLSQRLDEVFAEYGLSGWEFDVLATLRRAGAPYQLAPTEL
FSSLMVTSGTMTHRLKVLEGKGWIVREASSQDARSTLVRLSGEGFALVERALEGHVVNEHAILSALPARSVDALEKRLAE
LLAALEAPRG

Sequences:

>Translated_170_residues
MSDARGGDAVDRILEQWARERPDLDVSPMGVIGRLSRCAALLSQRLDEVFAEYGLSGWEFDVLATLRRAGAPYQLAPTEL
FSSLMVTSGTMTHRLKVLEGKGWIVREASSQDARSTLVRLSGEGFALVERALEGHVVNEHAILSALPARSVDALEKRLAE
LLAALEAPRG
>Mature_169_residues
SDARGGDAVDRILEQWARERPDLDVSPMGVIGRLSRCAALLSQRLDEVFAEYGLSGWEFDVLATLRRAGAPYQLAPTELF
SSLMVTSGTMTHRLKVLEGKGWIVREASSQDARSTLVRLSGEGFALVERALEGHVVNEHAILSALPARSVDALEKRLAEL
LAALEAPRG

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18511; Mature: 18380

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDARGGDAVDRILEQWARERPDLDVSPMGVIGRLSRCAALLSQRLDEVFAEYGLSGWEF
CCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
DVLATLRRAGAPYQLAPTELFSSLMVTSGTMTHRLKVLEGKGWIVREASSQDARSTLVRL
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHEEECCCEEEECCCCHHHHHHHHHH
SGEGFALVERALEGHVVNEHAILSALPARSVDALEKRLAELLAALEAPRG
CCCCHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SDARGGDAVDRILEQWARERPDLDVSPMGVIGRLSRCAALLSQRLDEVFAEYGLSGWEF
CCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
DVLATLRRAGAPYQLAPTELFSSLMVTSGTMTHRLKVLEGKGWIVREASSQDARSTLVRL
HHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHEEECCCEEEECCCCHHHHHHHHHH
SGEGFALVERALEGHVVNEHAILSALPARSVDALEKRLAELLAALEAPRG
CCCCHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]