Definition Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession NC_005085
Length 4,751,080

Click here to switch to the map view.

The map label for this gene is ybcJ [C]

Identifier: 34497146

GI number: 34497146

Start: 1831215

End: 1831430

Strand: Direct

Name: ybcJ [C]

Synonym: CV_1691

Alternate gene names: 34497146

Gene position: 1831215-1831430 (Clockwise)

Preceding gene: 34497145

Following gene: 34497147

Centisome position: 38.54

GC content: 60.19

Gene sequence:

>216_bases
ATGAAGGAAACTTACCAACTCTCCGGCGAGTACATCGCGCTGTGCGATCTGCTCAAAGCCTGCAATGTCTGCCATTCCGG
CGGCGCGGCCAAGCATTTCATCGCCGAAGGCAATGTGTCGGTGAACGGTCAGGTCGAGCTGCGCAAGACCTGCAAGATCC
GCGCCGGCCAACAGGTCAGCGGCGACGGATTTCTGATCGTGGTCGAGGCCGCCTGA

Upstream 100 bases:

>100_bases
CCTAAAAAATGGGCGGCCTGGAAAAGTTAAGACAGATTAAGGACTTGTCGGCCTTGTCCACAGGCCGCTCACAAGCCTGT
CCAGAACGAGTGTGCAAAAC

Downstream 100 bases:

>100_bases
GATGGAGGACCCCGCCGACATCATGCCCGAGCCGCCGTTCGAGGTGAGCGACGACATGTGCTGCGGCAGCGGCTGCGAGC
CGTGCATCCTGGATATCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 71; Mature: 71

Protein sequence:

>71_residues
MKETYQLSGEYIALCDLLKACNVCHSGGAAKHFIAEGNVSVNGQVELRKTCKIRAGQQVSGDGFLIVVEAA

Sequences:

>Translated_71_residues
MKETYQLSGEYIALCDLLKACNVCHSGGAAKHFIAEGNVSVNGQVELRKTCKIRAGQQVSGDGFLIVVEAA
>Mature_71_residues
MKETYQLSGEYIALCDLLKACNVCHSGGAAKHFIAEGNVSVNGQVELRKTCKIRAGQQVSGDGFLIVVEAA

Specific function: Unknown

COG id: COG2501

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7542; Mature: 7542

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.6 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
5.6 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKETYQLSGEYIALCDLLKACNVCHSGGAAKHFIAEGNVSVNGQVELRKTCKIRAGQQVS
CCCCCCCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCCEEECCEEEEEEEEEECCCCEEC
GDGFLIVVEAA
CCCEEEEEECC
>Mature Secondary Structure
MKETYQLSGEYIALCDLLKACNVCHSGGAAKHFIAEGNVSVNGQVELRKTCKIRAGQQVS
CCCCCCCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCCEEECCEEEEEEEEEECCCCEEC
GDGFLIVVEAA
CCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA