| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is yaiW [H]
Identifier: 34497127
GI number: 34497127
Start: 1811673
End: 1812956
Strand: Direct
Name: yaiW [H]
Synonym: CV_1672
Alternate gene names: 34497127
Gene position: 1811673-1812956 (Clockwise)
Preceding gene: 34497126
Following gene: 34497128
Centisome position: 38.13
GC content: 68.22
Gene sequence:
>1284_bases ATGGGCCCGCGCTGGGCTACACTGCCGTTTTTGCCAGTCTGCGAGAACACCTTGAACGCCCGTCTGACCCTGCTGGCAGG CTGCCTGCTGCTGGCCGCCTGCGCCACGCCCCCCCATCCCGCCTCCGCGCCTGCGCCCATCGTCGCGCCGGATATGCCGG CCTCCGCGCCGGCAGTCGACGTGTTTGCATCCTCCCAGCCGGCTTCTGCGCCGGCCGCCGCGCTGCCGTCGCGTCCGGTC GCGCGGCCGGTGCAGCCGCCGACGGCGATCTCCGAAAGCCAGGGCCGCGCCTTGCTGGACCGCCTGCTGCCGCCAGGCAT TCCGGACCGCAAGGGCTGGAGCAACGACGTGATGGGCGCGTTCAGCCACCTGAAGATTCCGTACACGCCGCAGTTCTTCT GCGCGGTGCTGGCGGTGGCGGAGCAGGAGTCCGGCTTCAGCCCGGACCCGGTGGTGCCGAATCTGTCCAAGATCGTCTGG GGCGAGATCGAGCAGCGCCGGCAGAAGTACCTGATCCCGCAGTTCGTCGTCGATGCGGCGATGGGCAAGAAATCCCCCGA CGGCCGCACTTTCAAGCAGCGCGTCGACGCCCTGCGCACCAAGCGCGAGATGAACGCCTTGTACGAAGACATGGTTCGCG AGCTGCCGTTCGGCCAGACCATCTTCGAACACAAGAACCCTATCCGCGACGGCGGGCCGATGCAGGTCAGCGTCGCTTTC GCCGAGACCCACATCCGCGCCTGGCCGTACCCGTACAATTATTCCAGCCTGCGCGACGAAGTGTTCGGCCGCCGCGGCAG CGTCTACTTCGGCACCGCCATCCTGCTGCAGTACCCGGCGCCGTATCACGAGATGGTCTACCGCTTCGCCGACTACAACG CCGGCCGCTACGCCAGCCGCAACGCCGCCTTCCAGCTGGCGGTGTCCCGGCTGTCCGGCCGCAAGCTGGCGCTGGACGGC GACATCATGCTGTACAGCGACAAGATGAACCGCGTGCTGTCCGGCGAAACCAGCGACACCCAGCGCGCGCTGCAATCCAT CGCCGGCCGGCTGGGCATCAGCGACGCCGACATGATGCGCGACCTGCGGCTGGAGAAGCTGTCCGGCTTCGGCCAGAGCC CGCTGTATCAGAAGGTGTTCGCGTTGGCCGGTCCCAAGGCCCCGCGGGAGATCATCCCGCAGATCGTGCTGGTCAGCCCC AAGTTCACCCACAAGCTGACCACCGAGTGGTTCGCGCGCCGCGTCGACGGCCGCTACCAGCGCTGCCTGCAGCGCGGAGG CTGA
Upstream 100 bases:
>100_bases GGACGACGCGCTGATCGCCCGGCTGGATGGCGCCATCGCCGCGATGCGCGCCGACGGCAGCATGGCCCGTTTCGATCTGC GCTGACGGCGGGCATGCCAA
Downstream 100 bases:
>100_bases GCGGCCCGCCGGCTTGAGTCTGGACCGATAGCACCTATAGTGATTGCAGCGGCGCCTGGGCGCCGACACGCATCCGGACG GCGGCCATTCCATGGTCGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 427; Mature: 426
Protein sequence:
>427_residues MGPRWATLPFLPVCENTLNARLTLLAGCLLLAACATPPHPASAPAPIVAPDMPASAPAVDVFASSQPASAPAAALPSRPV ARPVQPPTAISESQGRALLDRLLPPGIPDRKGWSNDVMGAFSHLKIPYTPQFFCAVLAVAEQESGFSPDPVVPNLSKIVW GEIEQRRQKYLIPQFVVDAAMGKKSPDGRTFKQRVDALRTKREMNALYEDMVRELPFGQTIFEHKNPIRDGGPMQVSVAF AETHIRAWPYPYNYSSLRDEVFGRRGSVYFGTAILLQYPAPYHEMVYRFADYNAGRYASRNAAFQLAVSRLSGRKLALDG DIMLYSDKMNRVLSGETSDTQRALQSIAGRLGISDADMMRDLRLEKLSGFGQSPLYQKVFALAGPKAPREIIPQIVLVSP KFTHKLTTEWFARRVDGRYQRCLQRGG
Sequences:
>Translated_427_residues MGPRWATLPFLPVCENTLNARLTLLAGCLLLAACATPPHPASAPAPIVAPDMPASAPAVDVFASSQPASAPAAALPSRPV ARPVQPPTAISESQGRALLDRLLPPGIPDRKGWSNDVMGAFSHLKIPYTPQFFCAVLAVAEQESGFSPDPVVPNLSKIVW GEIEQRRQKYLIPQFVVDAAMGKKSPDGRTFKQRVDALRTKREMNALYEDMVRELPFGQTIFEHKNPIRDGGPMQVSVAF AETHIRAWPYPYNYSSLRDEVFGRRGSVYFGTAILLQYPAPYHEMVYRFADYNAGRYASRNAAFQLAVSRLSGRKLALDG DIMLYSDKMNRVLSGETSDTQRALQSIAGRLGISDADMMRDLRLEKLSGFGQSPLYQKVFALAGPKAPREIIPQIVLVSP KFTHKLTTEWFARRVDGRYQRCLQRGG >Mature_426_residues GPRWATLPFLPVCENTLNARLTLLAGCLLLAACATPPHPASAPAPIVAPDMPASAPAVDVFASSQPASAPAAALPSRPVA RPVQPPTAISESQGRALLDRLLPPGIPDRKGWSNDVMGAFSHLKIPYTPQFFCAVLAVAEQESGFSPDPVVPNLSKIVWG EIEQRRQKYLIPQFVVDAAMGKKSPDGRTFKQRVDALRTKREMNALYEDMVRELPFGQTIFEHKNPIRDGGPMQVSVAFA ETHIRAWPYPYNYSSLRDEVFGRRGSVYFGTAILLQYPAPYHEMVYRFADYNAGRYASRNAAFQLAVSRLSGRKLALDGD IMLYSDKMNRVLSGETSDTQRALQSIAGRLGISDADMMRDLRLEKLSGFGQSPLYQKVFALAGPKAPREIIPQIVLVSPK FTHKLTTEWFARRVDGRYQRCLQRGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786576, Length=333, Percent_Identity=45.3453453453453, Blast_Score=311, Evalue=4e-86,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011673 - ProDom: PD041438 [H]
Pfam domain/function: PF07759 DUF1615 [H]
EC number: NA
Molecular weight: Translated: 47174; Mature: 47043
Theoretical pI: Translated: 9.86; Mature: 9.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGPRWATLPFLPVCENTLNARLTLLAGCLLLAACATPPHPASAPAPIVAPDMPASAPAVD CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE VFASSQPASAPAAALPSRPVARPVQPPTAISESQGRALLDRLLPPGIPDRKGWSNDVMGA EEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHH FSHLKIPYTPQFFCAVLAVAEQESGFSPDPVVPNLSKIVWGEIEQRRQKYLIPQFVVDAA HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH MGKKSPDGRTFKQRVDALRTKREMNALYEDMVRELPFGQTIFEHKNPIRDGGPMQVSVAF HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEEEE AETHIRAWPYPYNYSSLRDEVFGRRGSVYFGTAILLQYPAPYHEMVYRFADYNAGRYASR EHHHHEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCC NAAFQLAVSRLSGRKLALDGDIMLYSDKMNRVLSGETSDTQRALQSIAGRLGISDADMMR CHHHHHHHHHHCCCEEEECCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH DLRLEKLSGFGQSPLYQKVFALAGPKAPREIIPQIVLVSPKFTHKLTTEWFARRVDGRYQ HHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHCCEEEEECCCHHHHHHHHHHHHHHCHHHH RCLQRGG HHHHCCC >Mature Secondary Structure GPRWATLPFLPVCENTLNARLTLLAGCLLLAACATPPHPASAPAPIVAPDMPASAPAVD CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEE VFASSQPASAPAAALPSRPVARPVQPPTAISESQGRALLDRLLPPGIPDRKGWSNDVMGA EEECCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHH FSHLKIPYTPQFFCAVLAVAEQESGFSPDPVVPNLSKIVWGEIEQRRQKYLIPQFVVDAA HHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHH MGKKSPDGRTFKQRVDALRTKREMNALYEDMVRELPFGQTIFEHKNPIRDGGPMQVSVAF HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEEEEE AETHIRAWPYPYNYSSLRDEVFGRRGSVYFGTAILLQYPAPYHEMVYRFADYNAGRYASR EHHHHEECCCCCCHHHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHCCCCCCCCCC NAAFQLAVSRLSGRKLALDGDIMLYSDKMNRVLSGETSDTQRALQSIAGRLGISDADMMR CHHHHHHHHHHCCCEEEECCCEEEECCHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHH DLRLEKLSGFGQSPLYQKVFALAGPKAPREIIPQIVLVSPKFTHKLTTEWFARRVDGRYQ HHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHCCEEEEECCCHHHHHHHHHHHHHHCHHHH RCLQRGG HHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]