BacMap

Definition	Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession	NC_005085
Length	4,751,080

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The map label for this gene is yhdH [H]

Identifier: 34497125

GI number: 34497125

Start: 1809547

End: 1810869

Strand: Direct

Name: yhdH [H]

Synonym: CV_1670

Alternate gene names: 34497125

Gene position: 1809547-1810869 (Clockwise)

Preceding gene: 34497121

Following gene: 34497126

Centisome position: 38.09

GC content: 66.74

Gene sequence:

>1323_bases
ATGGCTAGATCTCAATGGGGCTCGCGCCTCGGTTTCATTCTCGCGGCAGCCGGCTCGGCCATCGGGCTGGGCGCCATCTG
GAAGTTTCCCTACGTGGCCGCCACCAACGGCGGCGGCGCGTTTTTGTTCATTTACCTCGGCATCTGCCTGACGCTGGGCC
TGGTGCTGATGCTGGCTGAAATGGCGTTGGGACGCGCCACCAGCGCCGGCGCCGTCGGCGCGTTCCGCAAGCTGGCCGGC
GGCTTCTGGCCGCTCATCGGCTACATGGGCGTGCTGGTGTGTTTTCTGATCCTGTCGTTCTACAGCGTGGTGGGCGGCTG
GACCATCGCCTACATCGTCAAGTCGCTGCAGGGCGGCATCATGACGTCCGATCCCAAGGCGCTCGGCGCCATTTTCGGCG
GCTTCATCAGCGACCCGGTGCAGCCGCTGCTCTATCACGGCGGCTTCGCGCTGCTGACGCTGGCCGTGGTGGTCGGCGGC
GTGCAGAAGGGCATCGAGGCGCTGTCCAAGTTCCTGATGCCGGCGCTGTTCGCGCTGATGCTGGTGCTGATCGCGCGCGG
ACTGACGCTGCCGGGCGCGCTGGAGGGCGTCAGCTATTTCGTCGCGCCGGACTTCTCCAAGGTGAGCGCCAGCATGCTGG
TGGACGCGCTGGGCCTGGCCTTCTTCTCGCTGTCGCTGGGCCTGGGCATCATGATCACCTACGGCTCCTACGTCGGCCGC
GAATCCAAGCTGCTGGGCTCGGCGCTGTGGGTGATCCTGCTGACGGTGGCCACTTGCTTCCTGGCCGGCCTGATGGTGCT
GCCGGCGGTATTCGCTTTCGGCTTCGACCCGTCCGCGGGCCCCGGCCTCACCTTCATCACCATGCCGGCGGTGTTCGCCC
ACCTGCCGCTGGGGCAGCTGTTCGCGGTGATGTTCTTCTGCCTGCTGCTGCTGGCGGCGCTGACTTCGTCGGTGTCGCTG
CTGGAGGTGGTGACCAGCTTCGCCATCGACGAGCTGCGCCTGTCGCGCCGCACCGCCGCCATCCTGATGGCCGCCGGCAC
CTTCCTGCTGGGCATCCCTGCCTCGCTGTCGCTGGGCGTATGGGGCGATTACCAACTGTTCGGCATGAACTTCTTCGATC
TGCTGGACTTCGTCACCTCCAAGCTGCTGATGCCGGCGGGCGAGCTGCTGCTGGCGCTGTTCGTAGGCTGGAAAGCCTGG
CCGGTGGTCAGGGCCGAGCTGTCGTCCGGCCGCTCGCCGCGGGCGATGCAATGCATGCGCGGCTTCTGCATGGCGCTGGC
GCCGCTGTTGATAGGCTGCATCATGGTGGCCAGCTTCCGCTGA

Upstream 100 bases:

>100_bases
GTGCACGTCAGACCCGCTCCGTTTCGACGGGGCGCTTTCGCGTGCCCGGACGCCCGCCGCGGCAAAGACAAAACCATTAC
ACGACAAAGATTTACAGGAC

Downstream 100 bases:

>100_bases
TGGCGGCATGAGAAGACGGGGAGCGGCGGCTCCCCGTTTTGCTATGGTTCAGACAGTACGGACGGTCTGGAGTAGCCATG
GCGAAGTGGCGAGTGGCGGC

Product: sodium/chloride ion channel

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MARSQWGSRLGFILAAAGSAIGLGAIWKFPYVAATNGGGAFLFIYLGICLTLGLVLMLAEMALGRATSAGAVGAFRKLAG
GFWPLIGYMGVLVCFLILSFYSVVGGWTIAYIVKSLQGGIMTSDPKALGAIFGGFISDPVQPLLYHGGFALLTLAVVVGG
VQKGIEALSKFLMPALFALMLVLIARGLTLPGALEGVSYFVAPDFSKVSASMLVDALGLAFFSLSLGLGIMITYGSYVGR
ESKLLGSALWVILLTVATCFLAGLMVLPAVFAFGFDPSAGPGLTFITMPAVFAHLPLGQLFAVMFFCLLLLAALTSSVSL
LEVVTSFAIDELRLSRRTAAILMAAGTFLLGIPASLSLGVWGDYQLFGMNFFDLLDFVTSKLLMPAGELLLALFVGWKAW
PVVRAELSSGRSPRAMQCMRGFCMALAPLLIGCIMVASFR

Sequences:

>Translated_440_residues
MARSQWGSRLGFILAAAGSAIGLGAIWKFPYVAATNGGGAFLFIYLGICLTLGLVLMLAEMALGRATSAGAVGAFRKLAG
GFWPLIGYMGVLVCFLILSFYSVVGGWTIAYIVKSLQGGIMTSDPKALGAIFGGFISDPVQPLLYHGGFALLTLAVVVGG
VQKGIEALSKFLMPALFALMLVLIARGLTLPGALEGVSYFVAPDFSKVSASMLVDALGLAFFSLSLGLGIMITYGSYVGR
ESKLLGSALWVILLTVATCFLAGLMVLPAVFAFGFDPSAGPGLTFITMPAVFAHLPLGQLFAVMFFCLLLLAALTSSVSL
LEVVTSFAIDELRLSRRTAAILMAAGTFLLGIPASLSLGVWGDYQLFGMNFFDLLDFVTSKLLMPAGELLLALFVGWKAW
PVVRAELSSGRSPRAMQCMRGFCMALAPLLIGCIMVASFR
>Mature_439_residues
ARSQWGSRLGFILAAAGSAIGLGAIWKFPYVAATNGGGAFLFIYLGICLTLGLVLMLAEMALGRATSAGAVGAFRKLAGG
FWPLIGYMGVLVCFLILSFYSVVGGWTIAYIVKSLQGGIMTSDPKALGAIFGGFISDPVQPLLYHGGFALLTLAVVVGGV
QKGIEALSKFLMPALFALMLVLIARGLTLPGALEGVSYFVAPDFSKVSASMLVDALGLAFFSLSLGLGIMITYGSYVGRE
SKLLGSALWVILLTVATCFLAGLMVLPAVFAFGFDPSAGPGLTFITMPAVFAHLPLGQLFAVMFFCLLLLAALTSSVSLL
EVVTSFAIDELRLSRRTAAILMAAGTFLLGIPASLSLGVWGDYQLFGMNFFDLLDFVTSKLLMPAGELLLALFVGWKAWP
VVRAELSSGRSPRAMQCMRGFCMALAPLLIGCIMVASFR

Specific function: Putative sodium-dependent transporter [H]

COG id: COG0733

COG function: function code R; Na+-dependent transporters of the SNF family

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family [H]

Homologues:

Organism=Homo sapiens, GI4507043, Length=409, Percent_Identity=27.3838630806846, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI21361581, Length=430, Percent_Identity=27.6744186046512, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI188528618, Length=426, Percent_Identity=28.6384976525822, Blast_Score=140, Evalue=3e-33,
Organism=Homo sapiens, GI171184408, Length=475, Percent_Identity=26.7368421052632, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI171184406, Length=475, Percent_Identity=26.7368421052632, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI171184404, Length=475, Percent_Identity=26.7368421052632, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI4507041, Length=454, Percent_Identity=26.8722466960352, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI7657587, Length=377, Percent_Identity=26.525198938992, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI289191377, Length=400, Percent_Identity=26.75, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI289191351, Length=400, Percent_Identity=26.75, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI4557046, Length=400, Percent_Identity=26.75, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI67782313, Length=426, Percent_Identity=26.7605633802817, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI67782317, Length=426, Percent_Identity=26.7605633802817, Blast_Score=119, Evalue=4e-27,
Organism=Homo sapiens, GI67782315, Length=426, Percent_Identity=26.7605633802817, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI197276623, Length=354, Percent_Identity=28.2485875706215, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI54607094, Length=354, Percent_Identity=28.2485875706215, Blast_Score=119, Evalue=6e-27,
Organism=Homo sapiens, GI58219014, Length=296, Percent_Identity=30.0675675675676, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI5032097, Length=443, Percent_Identity=27.765237020316, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI194018524, Length=297, Percent_Identity=28.956228956229, Blast_Score=104, Evalue=1e-22,
Organism=Homo sapiens, GI33354281, Length=298, Percent_Identity=26.1744966442953, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI51468073, Length=450, Percent_Identity=22.6666666666667, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI218563756, Length=443, Percent_Identity=27.313769751693, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI11181770, Length=292, Percent_Identity=27.0547945205479, Blast_Score=97, Evalue=4e-20,
Organism=Homo sapiens, GI21361693, Length=120, Percent_Identity=35.8333333333333, Blast_Score=91, Evalue=2e-18,
Organism=Homo sapiens, GI92859670, Length=219, Percent_Identity=29.2237442922374, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI197276625, Length=119, Percent_Identity=36.1344537815126, Blast_Score=82, Evalue=8e-16,
Organism=Homo sapiens, GI12408638, Length=278, Percent_Identity=25.8992805755396, Blast_Score=80, Evalue=4e-15,
Organism=Homo sapiens, GI300360519, Length=246, Percent_Identity=26.4227642276423, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI289191353, Length=319, Percent_Identity=24.7648902821317, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI55749589, Length=120, Percent_Identity=32.5, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI6005715, Length=188, Percent_Identity=30.3191489361702, Blast_Score=69, Evalue=9e-12,
Organism=Homo sapiens, GI134304856, Length=218, Percent_Identity=27.5229357798165, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI25146584, Length=414, Percent_Identity=25.8454106280193, Blast_Score=111, Evalue=8e-25,
Organism=Caenorhabditis elegans, GI71995588, Length=414, Percent_Identity=25.6038647342995, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17554804, Length=416, Percent_Identity=25.7211538461538, Blast_Score=95, Evalue=6e-20,
Organism=Caenorhabditis elegans, GI212642127, Length=480, Percent_Identity=22.2916666666667, Blast_Score=88, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI133952791, Length=203, Percent_Identity=31.5270935960591, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17569475, Length=415, Percent_Identity=24.3373493975904, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17555248, Length=193, Percent_Identity=27.979274611399, Blast_Score=81, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17542050, Length=119, Percent_Identity=36.1344537815126, Blast_Score=73, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI115534083, Length=125, Percent_Identity=29.6, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45551183, Length=453, Percent_Identity=27.8145695364238, Blast_Score=146, Evalue=2e-35,
Organism=Drosophila melanogaster, GI45550877, Length=443, Percent_Identity=28.2167042889391, Blast_Score=145, Evalue=7e-35,
Organism=Drosophila melanogaster, GI17136952, Length=378, Percent_Identity=28.8359788359788, Blast_Score=140, Evalue=2e-33,
Organism=Drosophila melanogaster, GI281364394, Length=378, Percent_Identity=28.8359788359788, Blast_Score=138, Evalue=7e-33,
Organism=Drosophila melanogaster, GI28574704, Length=378, Percent_Identity=28.8359788359788, Blast_Score=138, Evalue=7e-33,
Organism=Drosophila melanogaster, GI17136950, Length=378, Percent_Identity=28.8359788359788, Blast_Score=138, Evalue=7e-33,
Organism=Drosophila melanogaster, GI28574702, Length=378, Percent_Identity=28.8359788359788, Blast_Score=138, Evalue=7e-33,
Organism=Drosophila melanogaster, GI24762620, Length=403, Percent_Identity=26.7990074441687, Blast_Score=128, Evalue=8e-30,
Organism=Drosophila melanogaster, GI24661428, Length=383, Percent_Identity=27.9373368146214, Blast_Score=124, Evalue=1e-28,
Organism=Drosophila melanogaster, GI19921936, Length=406, Percent_Identity=27.0935960591133, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI45551088, Length=382, Percent_Identity=27.2251308900524, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24652942, Length=382, Percent_Identity=27.2251308900524, Blast_Score=114, Evalue=2e-25,
Organism=Drosophila melanogaster, GI221329674, Length=392, Percent_Identity=27.2959183673469, Blast_Score=111, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24639514, Length=392, Percent_Identity=27.2959183673469, Blast_Score=110, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24582567, Length=388, Percent_Identity=27.319587628866, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI281365034, Length=434, Percent_Identity=25.1152073732719, Blast_Score=108, Evalue=8e-24,
Organism=Drosophila melanogaster, GI24639516, Length=411, Percent_Identity=25.5474452554745, Blast_Score=105, Evalue=9e-23,
Organism=Drosophila melanogaster, GI281363702, Length=439, Percent_Identity=28.4738041002278, Blast_Score=105, Evalue=9e-23,
Organism=Drosophila melanogaster, GI19921352, Length=440, Percent_Identity=23.8636363636364, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24584353, Length=440, Percent_Identity=23.8636363636364, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24654186, Length=226, Percent_Identity=33.6283185840708, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24639853, Length=451, Percent_Identity=24.6119733924612, Blast_Score=96, Evalue=5e-20,
Organism=Drosophila melanogaster, GI24655079, Length=294, Percent_Identity=25.8503401360544, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI281363700, Length=345, Percent_Identity=28.9855072463768, Blast_Score=88, Evalue=1e-17,
Organism=Drosophila melanogaster, GI281364136, Length=187, Percent_Identity=32.620320855615, Blast_Score=82, Evalue=6e-16,
Organism=Drosophila melanogaster, GI24582569, Length=351, Percent_Identity=25.0712250712251, Blast_Score=69, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000175 [H]

Pfam domain/function: PF00209 SNF [H]

EC number: NA

Molecular weight: Translated: 46315; Mature: 46184

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00610 NA_NEUROTRAN_SYMP_1 ; PS50267 NA_NEUROTRAN_SYMP_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARSQWGSRLGFILAAAGSAIGLGAIWKFPYVAATNGGGAFLFIYLGICLTLGLVLMLAE
CCCCHHHHHHHHHHHCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
MALGRATSAGAVGAFRKLAGGFWPLIGYMGVLVCFLILSFYSVVGGWTIAYIVKSLQGGI
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
MTSDPKALGAIFGGFISDPVQPLLYHGGFALLTLAVVVGGVQKGIEALSKFLMPALFALM
CCCCHHHHHHHHHHHHHCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVLIARGLTLPGALEGVSYFVAPDFSKVSASMLVDALGLAFFSLSLGLGIMITYGSYVGR
HHHHHCCCCCCCHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
ESKLLGSALWVILLTVATCFLAGLMVLPAVFAFGFDPSAGPGLTFITMPAVFAHLPLGQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHH
FAVMFFCLLLLAALTSSVSLLEVVTSFAIDELRLSRRTAAILMAAGTFLLGIPASLSLGV
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECC
WGDYQLFGMNFFDLLDFVTSKLLMPAGELLLALFVGWKAWPVVRAELSSGRSPRAMQCMR
CCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHH
GFCMALAPLLIGCIMVASFR
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]