| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is ygjG [C]
Identifier: 34496891
GI number: 34496891
Start: 1518713
End: 1520053
Strand: Direct
Name: ygjG [C]
Synonym: CV_1436
Alternate gene names: 34496891
Gene position: 1518713-1520053 (Clockwise)
Preceding gene: 34496889
Following gene: 34496892
Centisome position: 31.97
GC content: 68.01
Gene sequence:
>1341_bases ATGAACCACCCGCTCACCACCCGTTCCGAATTCGACCATCTAGACCTGCGCGCGCACTGGATGCCGTTCAGCGCCAACCG CAATTTCCAGCGCGATCCGCGGTTGATCGTGTCCGGCGAGGGCAACTATCTGACCGACGCCGACGGCCGCCGCATCTTCG ACAGCCTGTCCGGCCTGTGGTGTTGCGGCGCCGGCCACAGCCGCAAGGAGATCGCCGAGGCGGCCTATCGCCAGCTGTCG ACGCTGGATTATTCGCCCGGCTTCCAGTTCGGCCACCCGTTGTCGTTCCGGCTGGCCGAGCGCGTGGCGGCGATGGCGCC GGGCGCGCTGAACCACGTGTTCTTCACCAACTCCGGCTCCGAATGCGCGGACACCGCGGTGAAGATGGCGCGCGCCTACT GGCGGCTGAAGGGCCAGGCGTCCAAGACCAAGCTGATCGGCCGCGCCCGCGGCTACCACGGCGTCAACATCGCCGGCACC AGCCTGGGCGGCATGAACGGCAACCGCAAATTATTCGGCCCGCTGATGGACGCGGACCATCTGCCGCACACCTTGCTGCC GGCCAACGCCTTCAGCCGCGGCCTGCCGGAGCAGGGCGCGGAGCTGGCGGACGATCTGCTGCGGCTGATCGAGCTGCACG ACGCGTCCAATATCGCCGCGGTGATTGTGGAGCCGATGGCCGGCTCCGCCGGCGTGATCGTGCCGCCGCAGGGCTATCTG CAGCGCTTGCGGGAGATTTGCACGCAGCACGGCATCCTGCTGATCTTCGACGAGGTGATCACCGGTTTCGGCCGCACCGG CTCGCTGTTCGGCGCCGACCACTTCGGCGTGACGCCGGACATCATGAATCTGGCCAAGCAGCTGACCAATGGCGCGGTGC CGATGGGCGCGGTGGTGGCGAGCTCGGAGATCTACGACGCTTTCATGGCACAGGCCACGCCGGAGTACGCGGTGGAATTC GCTCATGGTTATACCTATTCGGCACACCCGGTGGCCTGCGCGGCGGCGCTGGCGGCGCTGGATGTGCTGGAGCAGGAAAA CCTGGTGGCGAGAGCCGCGGAGCTGGCACCCCACTTCGAGCGCGGCATTCACGGCCTGAAAGGCTTGCCGCATGTGATCG ACATCCGCAACTGCGGTCTGGCCGGCGCGGTGCAGATCGCGCCGAGCGGCGGCGACGCCATCGTGCGGCCCTACGAGGCG GCGATGGCGCTGTGGCGCAAGGGCTTCTACGTCCGCTACGGCGGCGACGCGCTGCAGTTCGGCCCGCCGTTCACCGCCAC GCCGCAGGAGCTGGACAGCCTGTTCGACGCTGTCGGCGAGACGCTGGCCAAGCTGGCCTGA
Upstream 100 bases:
>100_bases ATGGTTTGATATTCACTAATCTGAACGTAAGAAAGATAGCATTTAACTCACGCAATGTCCGCGGCATGCTGTGTCTATAT TCCTGCCAGCGAGGCTTGCG
Downstream 100 bases:
>100_bases AACGATTGTCACCAATAAAAGAGAAACTGAAATGACGACTTTGCAGCATCTGATCCACGGCGAGGCTTGCGACGGCGGCA GCCGCCGCGCGCCGGTTTTC
Product: beta alanine--pyruvate transaminase
Products: NA
Alternate protein names: Omega-APT; Beta-alanine--pyruvate aminotransferase [H]
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MNHPLTTRSEFDHLDLRAHWMPFSANRNFQRDPRLIVSGEGNYLTDADGRRIFDSLSGLWCCGAGHSRKEIAEAAYRQLS TLDYSPGFQFGHPLSFRLAERVAAMAPGALNHVFFTNSGSECADTAVKMARAYWRLKGQASKTKLIGRARGYHGVNIAGT SLGGMNGNRKLFGPLMDADHLPHTLLPANAFSRGLPEQGAELADDLLRLIELHDASNIAAVIVEPMAGSAGVIVPPQGYL QRLREICTQHGILLIFDEVITGFGRTGSLFGADHFGVTPDIMNLAKQLTNGAVPMGAVVASSEIYDAFMAQATPEYAVEF AHGYTYSAHPVACAAALAALDVLEQENLVARAAELAPHFERGIHGLKGLPHVIDIRNCGLAGAVQIAPSGGDAIVRPYEA AMALWRKGFYVRYGGDALQFGPPFTATPQELDSLFDAVGETLAKLA
Sequences:
>Translated_446_residues MNHPLTTRSEFDHLDLRAHWMPFSANRNFQRDPRLIVSGEGNYLTDADGRRIFDSLSGLWCCGAGHSRKEIAEAAYRQLS TLDYSPGFQFGHPLSFRLAERVAAMAPGALNHVFFTNSGSECADTAVKMARAYWRLKGQASKTKLIGRARGYHGVNIAGT SLGGMNGNRKLFGPLMDADHLPHTLLPANAFSRGLPEQGAELADDLLRLIELHDASNIAAVIVEPMAGSAGVIVPPQGYL QRLREICTQHGILLIFDEVITGFGRTGSLFGADHFGVTPDIMNLAKQLTNGAVPMGAVVASSEIYDAFMAQATPEYAVEF AHGYTYSAHPVACAAALAALDVLEQENLVARAAELAPHFERGIHGLKGLPHVIDIRNCGLAGAVQIAPSGGDAIVRPYEA AMALWRKGFYVRYGGDALQFGPPFTATPQELDSLFDAVGETLAKLA >Mature_446_residues MNHPLTTRSEFDHLDLRAHWMPFSANRNFQRDPRLIVSGEGNYLTDADGRRIFDSLSGLWCCGAGHSRKEIAEAAYRQLS TLDYSPGFQFGHPLSFRLAERVAAMAPGALNHVFFTNSGSECADTAVKMARAYWRLKGQASKTKLIGRARGYHGVNIAGT SLGGMNGNRKLFGPLMDADHLPHTLLPANAFSRGLPEQGAELADDLLRLIELHDASNIAAVIVEPMAGSAGVIVPPQGYL QRLREICTQHGILLIFDEVITGFGRTGSLFGADHFGVTPDIMNLAKQLTNGAVPMGAVVASSEIYDAFMAQATPEYAVEF AHGYTYSAHPVACAAALAALDVLEQENLVARAAELAPHFERGIHGLKGLPHVIDIRNCGLAGAVQIAPSGGDAIVRPYEA AMALWRKGFYVRYGGDALQFGPPFTATPQELDSLFDAVGETLAKLA
Specific function: Catalyzes transamination between a variety of omega- amino acids, mono and diamines, and pyruvate. Plays a pivotal role in the metabolism of the omega amino acids [H]
COG id: COG0161
COG function: function code H; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family [H]
Homologues:
Organism=Homo sapiens, GI4557809, Length=422, Percent_Identity=31.2796208530806, Blast_Score=169, Evalue=7e-42, Organism=Homo sapiens, GI284507298, Length=333, Percent_Identity=33.033033033033, Blast_Score=146, Evalue=3e-35, Organism=Homo sapiens, GI37574042, Length=456, Percent_Identity=27.6315789473684, Blast_Score=141, Evalue=1e-33, Organism=Homo sapiens, GI226442705, Length=456, Percent_Identity=27.4122807017544, Blast_Score=135, Evalue=6e-32, Organism=Homo sapiens, GI13994255, Length=381, Percent_Identity=29.1338582677165, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI24119277, Length=458, Percent_Identity=27.0742358078603, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI226442709, Length=400, Percent_Identity=27.75, Blast_Score=124, Evalue=2e-28, Organism=Homo sapiens, GI188536080, Length=281, Percent_Identity=23.4875444839858, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI38679950, Length=281, Percent_Identity=23.4875444839858, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI38679946, Length=281, Percent_Identity=23.4875444839858, Blast_Score=73, Evalue=4e-13, Organism=Escherichia coli, GI145693181, Length=414, Percent_Identity=31.1594202898551, Blast_Score=187, Evalue=1e-48, Organism=Escherichia coli, GI1786991, Length=440, Percent_Identity=31.1363636363636, Blast_Score=173, Evalue=2e-44, Organism=Escherichia coli, GI1789759, Length=446, Percent_Identity=30.2690582959641, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI1788044, Length=444, Percent_Identity=29.7297297297297, Blast_Score=151, Evalue=6e-38, Organism=Escherichia coli, GI1789016, Length=367, Percent_Identity=29.700272479564, Blast_Score=141, Evalue=9e-35, Organism=Escherichia coli, GI1787560, Length=420, Percent_Identity=29.5238095238095, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1786349, Length=347, Percent_Identity=29.3948126801153, Blast_Score=102, Evalue=7e-23, Organism=Caenorhabditis elegans, GI32564660, Length=451, Percent_Identity=29.2682926829268, Blast_Score=155, Evalue=4e-38, Organism=Caenorhabditis elegans, GI25144271, Length=424, Percent_Identity=27.3584905660377, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI71992977, Length=463, Percent_Identity=25.0539956803456, Blast_Score=127, Evalue=2e-29, Organism=Caenorhabditis elegans, GI25144274, Length=234, Percent_Identity=32.4786324786325, Blast_Score=123, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17541228, Length=438, Percent_Identity=23.5159817351598, Blast_Score=89, Evalue=6e-18, Organism=Saccharomyces cerevisiae, GI6323470, Length=431, Percent_Identity=27.8422273781903, Blast_Score=166, Evalue=6e-42, Organism=Saccharomyces cerevisiae, GI6324386, Length=434, Percent_Identity=26.9585253456221, Blast_Score=141, Evalue=2e-34, Organism=Saccharomyces cerevisiae, GI6324432, Length=403, Percent_Identity=24.0694789081886, Blast_Score=108, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6321456, Length=281, Percent_Identity=24.9110320284698, Blast_Score=72, Evalue=1e-13, Organism=Drosophila melanogaster, GI21357415, Length=423, Percent_Identity=29.0780141843972, Blast_Score=162, Evalue=3e-40, Organism=Drosophila melanogaster, GI28574759, Length=446, Percent_Identity=28.9237668161435, Blast_Score=141, Evalue=1e-33, Organism=Drosophila melanogaster, GI161085790, Length=440, Percent_Identity=27.9545454545455, Blast_Score=139, Evalue=4e-33, Organism=Drosophila melanogaster, GI21356575, Length=394, Percent_Identity=28.9340101522843, Blast_Score=133, Evalue=2e-31, Organism=Drosophila melanogaster, GI281366494, Length=364, Percent_Identity=22.2527472527473, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24667139, Length=364, Percent_Identity=22.2527472527473, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24667143, Length=364, Percent_Identity=22.2527472527473, Blast_Score=70, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005814 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF00202 Aminotran_3 [H]
EC number: =2.6.1.18 [H]
Molecular weight: Translated: 48011; Mature: 48011
Theoretical pI: Translated: 6.56; Mature: 6.56
Prosite motif: PS00600 AA_TRANSFER_CLASS_3 ; PS00639 THIOL_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNHPLTTRSEFDHLDLRAHWMPFSANRNFQRDPRLIVSGEGNYLTDADGRRIFDSLSGLW CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHCCEE CCGAGHSRKEIAEAAYRQLSTLDYSPGFQFGHPLSFRLAERVAAMAPGALNHVFFTNSGS EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC ECADTAVKMARAYWRLKGQASKTKLIGRARGYHGVNIAGTSLGGMNGNRKLFGPLMDADH HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEECCCCCCCC LPHTLLPANAFSRGLPEQGAELADDLLRLIELHDASNIAAVIVEPMAGSAGVIVPPQGYL CCCHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCHHHH QRLREICTQHGILLIFDEVITGFGRTGSLFGADHFGVTPDIMNLAKQLTNGAVPMGAVVA HHHHHHHHHCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH SSEIYDAFMAQATPEYAVEFAHGYTYSAHPVACAAALAALDVLEQENLVARAAELAPHFE HHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGIHGLKGLPHVIDIRNCGLAGAVQIAPSGGDAIVRPYEAAMALWRKGFYVRYGGDALQF HHHHHHCCCCCEEEECCCCCCCEEEECCCCCCCEECHHHHHHHHHHCCCEEEECCCEEEC GPPFTATPQELDSLFDAVGETLAKLA CCCCCCCHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNHPLTTRSEFDHLDLRAHWMPFSANRNFQRDPRLIVSGEGNYLTDADGRRIFDSLSGLW CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEEEECCCCEEECCCHHHHHHHHCCEE CCGAGHSRKEIAEAAYRQLSTLDYSPGFQFGHPLSFRLAERVAAMAPGALNHVFFTNSGS EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCC ECADTAVKMARAYWRLKGQASKTKLIGRARGYHGVNIAGTSLGGMNGNRKLFGPLMDADH HHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEECCCCCCCC LPHTLLPANAFSRGLPEQGAELADDLLRLIELHDASNIAAVIVEPMAGSAGVIVPPQGYL CCCHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCEEECCHHHH QRLREICTQHGILLIFDEVITGFGRTGSLFGADHFGVTPDIMNLAKQLTNGAVPMGAVVA HHHHHHHHHCCEEEEEHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHH SSEIYDAFMAQATPEYAVEFAHGYTYSAHPVACAAALAALDVLEQENLVARAAELAPHFE HHHHHHHHHHHCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RGIHGLKGLPHVIDIRNCGLAGAVQIAPSGGDAIVRPYEAAMALWRKGFYVRYGGDALQF HHHHHHCCCCCEEEECCCCCCCEEEECCCCCCCEECHHHHHHHHHHCCCEEEECCCEEEC GPPFTATPQELDSLFDAVGETLAKLA CCCCCCCHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1618757; 6822556; 2500426 [H]