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The map label for this gene is DegT [H]

Identifier: 34496861

GI number: 34496861

Start: 1480463

End: 1481578

Strand: Reverse

Name: DegT [H]

Synonym: CV_1406

Alternate gene names: 34496861

Gene position: 1481578-1480463 (Counterclockwise)

Preceding gene: 34496862

Following gene: 34496860

Centisome position: 31.18

GC content: 68.91

Gene sequence:

>1116_bases
ATGACCGCAACCATCGCCGCGGCCCAGACCGCCGGCCGCGTGATCTCCGACAAATACCGTCCGCAATACCCGGACGATCT
CCCCGCGCTGGAGCGGGCGCTGCGCGGCGCGCTGTCCGGCACCAGCGACACCGTCGTCGCCTACGAGCAAGCGCTGGCCG
CCTGGTTCGGCGCCGCCGAGGCCATCGCCGTGTCTTCCGGCGGCGCGGCCGTGAGCGTGGCGCTGTTCGCCGCCGGCGTG
CAGCCCGGCGATGACGTGTTGCTGACGCCCAGCTGCCCGCTGTGCACGGTCTACCCCATCATCGCCGCCGGCGCCAATCC
CGTGTTTGTGGACACCCGCGAACACGGTTTCGGCGCCGATCCGGACTCGGTGAGGGAACGCGTCACCCCCCGAGCCTCGG
CGCTGATCGACATCCCGATGTGGGGCTACCCCACTGAAGTGGACGAATTGCGGGGACTGGCCGACTCGCTGGACTTGAAG
CTGATTCTGGACCTGGCCCACTCGCACGGCAGCACGCTGCACGGCCGGCACCTGTCGTCCTACGGCCACCTGTCCTGCTT
CAGCACCCACGAGCGCAAGCCGCTGGCCACCGGCGAGGGCGGCTTCCTGCTGACCGACGACGCCGAGCTCGCCGAGCGCT
GCCGCTCCTACAGCCGCTTCGGCAACCTCAACGGCGCGGACTTCGGCCTCAACTACAAGCTGGCCGCGCTGCCGGCGGCG
CTGGGCCACAGCCGGCTGGACAAGCTCGCCGGGCAGATAGACCGCCGGCGCACCCATGCCCGCCATCTGCTGCAACGGCT
GCGCCACCCCCAGGTTCGGGAAAAGCGGATCATAGAAGGCGGCAACCCCAACTACTACTTTCTCAACCTGGAACTGGGGT
TCGCCGACAACCGCGCCTTCATCGACTACCTGGACGCGCGCGGCATTCCATCCGACATCAAGCGCTACGGCTGCCAGGCG
CTGTACCGCTTCCCGGCGCTGGAGCAGTACCGCCGCGACTGCCCGAATGCCGAAGCGCTGCTCTCCGGCATGACCACGCT
GCCGGTACACCCGGCGCTGGGCGAGGAAGAGTTGGACTACATGGCGGACGTCATCAACGGGTACCAGGCGCCATGA

Upstream 100 bases:

>100_bases
TCTGCTCGGCCGACGCCGTGGCCCAGGGCCTGCAAAACGCCCATAGCCGGATACGCACCGGCATCGAATCTCTGTCGCTG
TAACCGAACGGGAGTCCTCC

Downstream 100 bases:

>100_bases
TCACCGACCGCGCGATGCAGCGCGCCGGGTTGGAACGGCACTTCACCGCTTCCGCCTTCGTGCTCAACCCCCACCATGAG
GTGCTGCTGCTGCGGCACCG

Product: aspartate aminotransferase

Products: NA

Alternate protein names: UDP-(beta-L-threo-pentapyranosyl-4''-ulose diphosphate) aminotransferase; UDP-Ara4O aminotransferase; UDP-4-amino-4-deoxy-L-arabinose aminotransferase [H]

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MTATIAAAQTAGRVISDKYRPQYPDDLPALERALRGALSGTSDTVVAYEQALAAWFGAAEAIAVSSGGAAVSVALFAAGV
QPGDDVLLTPSCPLCTVYPIIAAGANPVFVDTREHGFGADPDSVRERVTPRASALIDIPMWGYPTEVDELRGLADSLDLK
LILDLAHSHGSTLHGRHLSSYGHLSCFSTHERKPLATGEGGFLLTDDAELAERCRSYSRFGNLNGADFGLNYKLAALPAA
LGHSRLDKLAGQIDRRRTHARHLLQRLRHPQVREKRIIEGGNPNYYFLNLELGFADNRAFIDYLDARGIPSDIKRYGCQA
LYRFPALEQYRRDCPNAEALLSGMTTLPVHPALGEEELDYMADVINGYQAP

Sequences:

>Translated_371_residues
MTATIAAAQTAGRVISDKYRPQYPDDLPALERALRGALSGTSDTVVAYEQALAAWFGAAEAIAVSSGGAAVSVALFAAGV
QPGDDVLLTPSCPLCTVYPIIAAGANPVFVDTREHGFGADPDSVRERVTPRASALIDIPMWGYPTEVDELRGLADSLDLK
LILDLAHSHGSTLHGRHLSSYGHLSCFSTHERKPLATGEGGFLLTDDAELAERCRSYSRFGNLNGADFGLNYKLAALPAA
LGHSRLDKLAGQIDRRRTHARHLLQRLRHPQVREKRIIEGGNPNYYFLNLELGFADNRAFIDYLDARGIPSDIKRYGCQA
LYRFPALEQYRRDCPNAEALLSGMTTLPVHPALGEEELDYMADVINGYQAP
>Mature_370_residues
TATIAAAQTAGRVISDKYRPQYPDDLPALERALRGALSGTSDTVVAYEQALAAWFGAAEAIAVSSGGAAVSVALFAAGVQ
PGDDVLLTPSCPLCTVYPIIAAGANPVFVDTREHGFGADPDSVRERVTPRASALIDIPMWGYPTEVDELRGLADSLDLKL
ILDLAHSHGSTLHGRHLSSYGHLSCFSTHERKPLATGEGGFLLTDDAELAERCRSYSRFGNLNGADFGLNYKLAALPAAL
GHSRLDKLAGQIDRRRTHARHLLQRLRHPQVREKRIIEGGNPNYYFLNLELGFADNRAFIDYLDARGIPSDIKRYGCQAL
YRFPALEQYRRDCPNAEALLSGMTTLPVHPALGEEELDYMADVINGYQAP

Specific function: Catalyzes the conversion of UDP-4-keto-arabinose (UDP- Ara4O) to UDP-4-amino-4-deoxy-L-arabinose (UDP-L-Ara4N). The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family. ArnB subfamily [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=249, Percent_Identity=30.9236947791165, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI2367285, Length=251, Percent_Identity=29.0836653386454, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022850
- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: =2.6.1.87 [H]

Molecular weight: Translated: 40319; Mature: 40188

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTATIAAAQTAGRVISDKYRPQYPDDLPALERALRGALSGTSDTVVAYEQALAAWFGAAE
CCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
AIAVSSGGAAVSVALFAAGVQPGDDVLLTPSCPLCTVYPIIAAGANPVFVDTREHGFGAD
EEEECCCCCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCC
PDSVRERVTPRASALIDIPMWGYPTEVDELRGLADSLDLKLILDLAHSHGSTLHGRHLSS
HHHHHHHCCCCHHEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHCC
YGHLSCFSTHERKPLATGEGGFLLTDDAELAERCRSYSRFGNLNGADFGLNYKLAALPAA
CCCEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHH
LGHSRLDKLAGQIDRRRTHARHLLQRLRHPQVREKRIIEGGNPNYYFLNLELGFADNRAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHH
IDYLDARGIPSDIKRYGCQALYRFPALEQYRRDCPNAEALLSGMTTLPVHPALGEEELDY
HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCHHCCCCCCCCHHHHHH
MADVINGYQAP
HHHHHHCCCCC
>Mature Secondary Structure 
TATIAAAQTAGRVISDKYRPQYPDDLPALERALRGALSGTSDTVVAYEQALAAWFGAAE
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHH
AIAVSSGGAAVSVALFAAGVQPGDDVLLTPSCPLCTVYPIIAAGANPVFVDTREHGFGAD
EEEECCCCCHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHCCCCCEEEECCCCCCCCC
PDSVRERVTPRASALIDIPMWGYPTEVDELRGLADSLDLKLILDLAHSHGSTLHGRHLSS
HHHHHHHCCCCHHEEEECCCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHCC
YGHLSCFSTHERKPLATGEGGFLLTDDAELAERCRSYSRFGNLNGADFGLNYKLAALPAA
CCCEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHH
LGHSRLDKLAGQIDRRRTHARHLLQRLRHPQVREKRIIEGGNPNYYFLNLELGFADNRAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEEEEECCCCCCHH
IDYLDARGIPSDIKRYGCQALYRFPALEQYRRDCPNAEALLSGMTTLPVHPALGEEELDY
HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHCCCHHCCCCCCCCHHHHHH
MADVINGYQAP
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA