| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is nfdA [H]
Identifier: 34496740
GI number: 34496740
Start: 1351430
End: 1353310
Strand: Direct
Name: nfdA [H]
Synonym: CV_1285
Alternate gene names: 34496740
Gene position: 1351430-1353310 (Clockwise)
Preceding gene: 34496739
Following gene: 34496741
Centisome position: 28.44
GC content: 69.32
Gene sequence:
>1881_bases ATGGCTATAGCTGATGTGATTCTGCGCAATGGCCGCATCGCCACGCTGGACCGGCGGCGGCCGCAGGCGAGCGCCGTCGC CGTCAAGGACGGCCGCTTCCTCGCGGTGGGGGAGGAGGCGGAGATCATGGCGCTGGCCGGGCCTACCACCCGCGTCGTCG ATCTCAAGGGCCGCCGCGCGCTGCCCGGCCTGATCGACAACCACACCCATCTGGTGCGCGGCGGGCTCAACTTCAATATG GAGCTGCGCTGGGACGGCGTGCGCTCGCTGGCCGACGCGATGGACATGCTGCGGCGGCAGGTGGCCGTCACGCCCGCCCC GCAATGGGTGCGGGTGGTGGGCGGCTTCACCGAGCACCAGTTCGTCGAAAAGCGGCTGCCCACGCTGGACGAGATCAACG CCGTCGCGCCGGACACGCCGGTCTTCCTGCTGCACCTGTATGACCGCGCCCTGCTCAACGGCGCCGCGTTGCGCGCCGTC GGCTACGGCCTCGACACGCCGGCGCCGCCGGGCGGGGAGATCGTCCGCGACGGCGGCGGCAACCCTACCGGTCTGCTGTT GGCCAAGCCCAATGCCGCCATCCTGTATGCGACGCTGGCCAAGGGGCCCAAGCTGCCGTTCGACTACCAGCTCAACTCCA CCCGCCACTTCATGCGCGAACTGAACCGCCTGGGCGTGACCGGCGTCATCGACGCCGGCGGCGGCTTCCAGAACTACCCG GACGATTACCAGGTGATCCGGCAACTGGCCGACGCCGGACAGATGACGGTGCGGCTGGCCTACAATCTGTTCACCCAGAA GCCGAAGGCGGAAAAGGAGGATTTCCTGGCCTGGACCGCCGGCGTCCGCTACAAACAGGGCGACGACTATTTCCGCCACA ACGGCGCTGGCGAGATGCTGGTGTTTTCCGCCGCCGATTTCGAAGACTTCCGCCAGCCGCGGCCCGAGATGCCGGCGGAA ATGGAGGGCGAGCTGGAAGAGGTGGTGCGCGTCCTGGCGCAGAACCGCTGGCCGTGGCGGCTGCACGCCACCTACGACGA AACCATCTCCCGCGCGCTGGACGTGTTCGAGAAGGTGGACCGCGACATCCCCTTGCAAGGGCTGAACTGGTTCTTCGACC ACGCCGAGACCATCTCCGAGCGCTCGATGGACCGCATCGCCGCGCTGGGCGGCGGCATCGCGGTGCAGCACCGGATGGCC TACCAGGGCGAGTACTTCGTCGAGCGCTACGGCGCGGCGGCGGCCGAGGCCACGCCGCCGATCGCCCGCATGCTGGAAAA GGGACTGAAAGTGTCGGCCGGCACCGACGCCACCCGCGTCGCCTCCTACAATCCCTGGGTGTCGCTGGCGTGGATGATCA CCGGCAAGACCGTAGGCGGCCTGCGGCTCTACCCGCAGCGCAACTGCCTGGACCGCGAAACCGCGCTGCGGATGTGGACC GAGCACGTGGCCTGGTTCACCGACGAGGAGGGCGGGCGCGGCCGCATCGAGGCCGGCCAGCTGGCCGACCTGGTCGTGCC GGACAAAGACTTCTTCTCCTGCCCGGAGGATGACATCTCCTTTCTGGTGTCGGAGCTGACCATGGTGGGCGGCCGCATCG TCTACGCCGCGGGCGGTTTCGCCGCGCTGGACGACAATCCTTTGCCGCCGGCGATGCCGGACTGGTCGCCGGCGCGGACC TTCAAGGGATACGCCGCCTGGGGCGATCCAGACGGCGCCGGCCGCCATTCGCTGCAGCGCCGGGCCGTGGCCGCTTGCGG CTGCGCCAATGCCTGCGGCCTGCACGGCCACCAGCATGCGCGGGCCTGGGGGACGGCGTTGCCGGTATCGGACGCCAAGG GTTTTTTCGGCGCGCTCGGCTGCTCCTGCTGGGCGGTGTGA
Upstream 100 bases:
>100_bases CTACGCGAAAACCATGTTCGGCGGCCACGAAGGCTGATTGCCGCGCCGCCGCCGGCCGCGCGTCCGCCGGCGGCGGCCGA TATCCAGGGGAGAAGCCACC
Downstream 100 bases:
>100_bases GAGGCGCGGCAAGGCCTCGGCGAGCTTGCTTCACGTTAAGGTTTCGTTCCGGGCATTTGGTGTAGAATGCCCGGATCGTT AACCCTTTGATGGATGAGTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 626; Mature: 625
Protein sequence:
>626_residues MAIADVILRNGRIATLDRRRPQASAVAVKDGRFLAVGEEAEIMALAGPTTRVVDLKGRRALPGLIDNHTHLVRGGLNFNM ELRWDGVRSLADAMDMLRRQVAVTPAPQWVRVVGGFTEHQFVEKRLPTLDEINAVAPDTPVFLLHLYDRALLNGAALRAV GYGLDTPAPPGGEIVRDGGGNPTGLLLAKPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGVIDAGGGFQNYP DDYQVIRQLADAGQMTVRLAYNLFTQKPKAEKEDFLAWTAGVRYKQGDDYFRHNGAGEMLVFSAADFEDFRQPRPEMPAE MEGELEEVVRVLAQNRWPWRLHATYDETISRALDVFEKVDRDIPLQGLNWFFDHAETISERSMDRIAALGGGIAVQHRMA YQGEYFVERYGAAAAEATPPIARMLEKGLKVSAGTDATRVASYNPWVSLAWMITGKTVGGLRLYPQRNCLDRETALRMWT EHVAWFTDEEGGRGRIEAGQLADLVVPDKDFFSCPEDDISFLVSELTMVGGRIVYAAGGFAALDDNPLPPAMPDWSPART FKGYAAWGDPDGAGRHSLQRRAVAACGCANACGLHGHQHARAWGTALPVSDAKGFFGALGCSCWAV
Sequences:
>Translated_626_residues MAIADVILRNGRIATLDRRRPQASAVAVKDGRFLAVGEEAEIMALAGPTTRVVDLKGRRALPGLIDNHTHLVRGGLNFNM ELRWDGVRSLADAMDMLRRQVAVTPAPQWVRVVGGFTEHQFVEKRLPTLDEINAVAPDTPVFLLHLYDRALLNGAALRAV GYGLDTPAPPGGEIVRDGGGNPTGLLLAKPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGVIDAGGGFQNYP DDYQVIRQLADAGQMTVRLAYNLFTQKPKAEKEDFLAWTAGVRYKQGDDYFRHNGAGEMLVFSAADFEDFRQPRPEMPAE MEGELEEVVRVLAQNRWPWRLHATYDETISRALDVFEKVDRDIPLQGLNWFFDHAETISERSMDRIAALGGGIAVQHRMA YQGEYFVERYGAAAAEATPPIARMLEKGLKVSAGTDATRVASYNPWVSLAWMITGKTVGGLRLYPQRNCLDRETALRMWT EHVAWFTDEEGGRGRIEAGQLADLVVPDKDFFSCPEDDISFLVSELTMVGGRIVYAAGGFAALDDNPLPPAMPDWSPART FKGYAAWGDPDGAGRHSLQRRAVAACGCANACGLHGHQHARAWGTALPVSDAKGFFGALGCSCWAV >Mature_625_residues AIADVILRNGRIATLDRRRPQASAVAVKDGRFLAVGEEAEIMALAGPTTRVVDLKGRRALPGLIDNHTHLVRGGLNFNME LRWDGVRSLADAMDMLRRQVAVTPAPQWVRVVGGFTEHQFVEKRLPTLDEINAVAPDTPVFLLHLYDRALLNGAALRAVG YGLDTPAPPGGEIVRDGGGNPTGLLLAKPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGVIDAGGGFQNYPD DYQVIRQLADAGQMTVRLAYNLFTQKPKAEKEDFLAWTAGVRYKQGDDYFRHNGAGEMLVFSAADFEDFRQPRPEMPAEM EGELEEVVRVLAQNRWPWRLHATYDETISRALDVFEKVDRDIPLQGLNWFFDHAETISERSMDRIAALGGGIAVQHRMAY QGEYFVERYGAAAAEATPPIARMLEKGLKVSAGTDATRVASYNPWVSLAWMITGKTVGGLRLYPQRNCLDRETALRMWTE HVAWFTDEEGGRGRIEAGQLADLVVPDKDFFSCPEDDISFLVSELTMVGGRIVYAAGGFAALDDNPLPPAMPDWSPARTF KGYAAWGDPDGAGRHSLQRRAVAACGCANACGLHGHQHARAWGTALPVSDAKGFFGALGCSCWAV
Specific function: Hydrolyzes N-substituted formamides, but not amides. N- benzylformamide is the preferred substrate, while N-butylformamide is hydrolyzed at a much lower rate. Has very low activity towards allylformamide, N-(2-cyclohex-1-enylethyl)formamide and N-(alpha-
COG id: COG1574
COG function: function code R; Predicted metal-dependent hydrolase with the TIM-barrel fold
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013108 - InterPro: IPR011059 [H]
Pfam domain/function: PF07969 Amidohydro_3 [H]
EC number: =3.5.1.91 [H]
Molecular weight: Translated: 68750; Mature: 68619
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIADVILRNGRIATLDRRRPQASAVAVKDGRFLAVGEEAEIMALAGPTTRVVDLKGRRA CCHHHHHHCCCCEEEECCCCCCCCEEEEECCEEEEECCCCCEEEEECCCEEEEECCCCCC LPGLIDNHTHLVRGGLNFNMELRWDGVRSLADAMDMLRRQVAVTPAPQWVRVVGGFTEHQ CCCHHCCCCEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH FVEKRLPTLDEINAVAPDTPVFLLHLYDRALLNGAALRAVGYGLDTPAPPGGEIVRDGGG HHHHHCCCHHHCCCCCCCCCEEHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCEEECCCC NPTGLLLAKPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGVIDAGGGFQNYP CCCEEEEECCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCC DDYQVIRQLADAGQMTVRLAYNLFTQKPKAEKEDFLAWTAGVRYKQGDDYFRHNGAGEML HHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCHHHHEEEECCCEECCCCCHHHCCCCCCEE VFSAADFEDFRQPRPEMPAEMEGELEEVVRVLAQNRWPWRLHATYDETISRALDVFEKVD EEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHC RDIPLQGLNWFFDHAETISERSMDRIAALGGGIAVQHRMAYQGEYFVERYGAAAAEATPP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCHHHHHHHCCCCCCCCCH IARMLEKGLKVSAGTDATRVASYNPWVSLAWMITGKTVGGLRLYPQRNCLDRETALRMWT HHHHHHHCCEEECCCCCCEEECCCCCEEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHH EHVAWFTDEEGGRGRIEAGQLADLVVPDKDFFSCPEDDISFLVSELTMVGGRIVYAAGGF HHHHEEECCCCCCCCCCCCCEEEEECCCCHHCCCCHHHHHHHHHHHHHHCCEEEEEECCE AALDDNPLPPAMPDWSPARTFKGYAAWGDPDGAGRHSLQRRAVAACGCANACGLHGHQHA EECCCCCCCCCCCCCCCHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH RAWGTALPVSDAKGFFGALGCSCWAV HHHCCCCCCCCCCCHHHHHCCCEECC >Mature Secondary Structure AIADVILRNGRIATLDRRRPQASAVAVKDGRFLAVGEEAEIMALAGPTTRVVDLKGRRA CHHHHHHCCCCEEEECCCCCCCCEEEEECCEEEEECCCCCEEEEECCCEEEEECCCCCC LPGLIDNHTHLVRGGLNFNMELRWDGVRSLADAMDMLRRQVAVTPAPQWVRVVGGFTEHQ CCCHHCCCCEEEECCCCEEEEEEECHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHH FVEKRLPTLDEINAVAPDTPVFLLHLYDRALLNGAALRAVGYGLDTPAPPGGEIVRDGGG HHHHHCCCHHHCCCCCCCCCEEHHHHHHHHHHCCHHHHHCCCCCCCCCCCCCCEEECCCC NPTGLLLAKPNAAILYATLAKGPKLPFDYQLNSTRHFMRELNRLGVTGVIDAGGGFQNYP CCCEEEEECCCCEEEEEEECCCCCCCEEEECCHHHHHHHHHHHCCCEEEEECCCCCCCCC DDYQVIRQLADAGQMTVRLAYNLFTQKPKAEKEDFLAWTAGVRYKQGDDYFRHNGAGEML HHHHHHHHHHCCCCEEEEEEHHHHHCCCCCCHHHHEEEECCCEECCCCCHHHCCCCCCEE VFSAADFEDFRQPRPEMPAEMEGELEEVVRVLAQNRWPWRLHATYDETISRALDVFEKVD EEECCCHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHC RDIPLQGLNWFFDHAETISERSMDRIAALGGGIAVQHRMAYQGEYFVERYGAAAAEATPP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHCCHHHHHHHCCCCCCCCCH IARMLEKGLKVSAGTDATRVASYNPWVSLAWMITGKTVGGLRLYPQRNCLDRETALRMWT HHHHHHHCCEEECCCCCCEEECCCCCEEEEEEEECCCCCCEEECCCCCCCCHHHHHHHHH EHVAWFTDEEGGRGRIEAGQLADLVVPDKDFFSCPEDDISFLVSELTMVGGRIVYAAGGF HHHHEEECCCCCCCCCCCCCEEEEECCCCHHCCCCHHHHHHHHHHHHHHCCEEEEEECCE AALDDNPLPPAMPDWSPARTFKGYAAWGDPDGAGRHSLQRRAVAACGCANACGLHGHQHA EECCCCCCCCCCCCCCCHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHH RAWGTALPVSDAKGFFGALGCSCWAV HHHCCCCCCCCCCCHHHHHCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA