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The map label for this gene is sgrR [H]

Identifier: 34496633

GI number: 34496633

Start: 1239526

End: 1241244

Strand: Reverse

Name: sgrR [H]

Synonym: CV_1178

Alternate gene names: 34496633

Gene position: 1241244-1239526 (Counterclockwise)

Preceding gene: 34496639

Following gene: 34496632

Centisome position: 26.13

GC content: 70.51

Gene sequence:

>1719_bases
ATGGATGAAAGTCCAAATAAATACTTCCGCTTTTATGCCGTCATTCACCCGGAAGCCCAAATGCGCCTGCAACAGCAATA
CGAGCAACTCTATCTGGCTTACGGCGACGCGCCGTCCCAGCCCGGCCTGTCCCAATTGGCCGAGCTGTGGCGGTGCAGCG
AGCGCAACGCGCGGCTGCAACTGGCCAGAATGCGCGAGCAGGGTTGGCTGGAATGGCGGGCCGGCCGCGGCCGCGGCCAT
CGCTCCACCCTCAGCCTGCTGCGGCGTCCGGACGAGCTGGAATGGCAGCAATTGCAGCGCATGCTGGCGCGCGGCCAGCT
GGAGCAGGCGTTCTCCCGGCTGGAGCCGGCGCGGCAGCAACGGCTGCTGGCCAGCCTGCCGCAGCACCTGGGCGCCGGCG
ACAGCGGCCGCAGCCTGCGCATTCCCATTCCGCACGCGCCGCTGACGCTGGACCCGCAGCGGGTCAACGCCCGGCTGGAG
TCCCACCTGGTGCGGCAGATCTTCGACCGGCTGTGCCGCCACGACAGGCTGGGCCAGGTGTTGCGGCCAGCGCTGGCCCA
TCATTGGGAGGCGGATCCGGAAGGCAGAAACTGGCGCTTCTGGCTGCGGCCCGGCCTGCGCTTTCACGACGGGGGACCGC
TGGATGCCGAAACCGCCGCCGCCAGCCTGCTCAGGCTCAAGCAGCCGGACAATCCCTATCACGCGCTGTACGCCCATCTG
CGGCGGGTGGATGTCCACGACGCGCTATCGTTCAGCTGCCGGCTCACCGAAGCCGATCACCTGTGGCCGCAGCGGCTGGC
CACCGCCAACGCCTCCATCGTGCCCATGCGCCGCAGCCAGGATTTCGAACGCATGCCGGTGGGCAGCGGACCGTTCCGCG
TCGAACTGCACAGCCCGCAGCGGCTGAAACTGGCCGCGTTCGAGCAGCATTACCGCGAGCGGGCGCTGCTGGACAGCATC
GAGCTGTGGATCATTCCCTCCCCGGCGGAGCAGGATTTCCATCTGCGGCTGGAATACGGCAGCCAGCGCGGCGCCACCAT
GCTGCAGTCCGCCTGCACCTACCTGATGCTGTCGCCGACCAGCCGCCGCATTCCGGCCGGGCAGCGGCTGCCGCTGATGC
GCTTCCTGGCCGAACCCCATCCTGTGGCCGCCTGCGACGAGCGCGCGCCGGCGCTGGGCCTGCAGCCGGGCTGGCGCCAT
CCTCGCCCGGCGCCGTCCCCGCCGCCGAGGCTGGACGCGCAGCGGCTGACGCTGTTCCACTACGACCTGCCCTGCTTTCC
GCCGCTGGCGGCGGCGCTGGCCGAGCGCCTGTCGCGGCTGGGCATCGGGCTGGACATCCGGTGCCTGACGCGGCGCGAGT
TCTTCGACAGCGCCGCCTGGCGCGGCCAGGCCGACCTGATCCTCAGCAGCGAGCTGCTGCACGACGACCGCGACTACGGC
ATGTTCGAGTGGCTGAGCGGCTGCAGCACGCTGCAGCTGGGCCTGTCGCCCGACGCCTCCGCACGGCTGGAACGCGATAT
GCGCGGCTTGAAGGCGGAAGCGGAACGCGCCGCGCGCCAGGACGGCTACCGCCGCGCCGGCGACTGGCTGGTGGCCGAGG
GCTGGATGCTGCCGCTGTCGCACGAGACGCTGGGCCATGACGCCAGCCCGCAGCTGGCCGGCCTGCAGCTGGGCGGCAAC
GGCTGGACCGATTTCGCCGGGCTGTGGCTGCGCGCTTGA

Upstream 100 bases:

>100_bases
CAGCAGCACGCGCCGCACCACGGGAGAACGCAGATCCACGACAACACCTTGTAAAGCGAAGGGAACCGCTGCAGTATTGC
CGATAAAGCGGAATGTAAAA

Downstream 100 bases:

>100_bases
CGCCGGTCAAATCCCGGTTCGGCGGCACTTGAATCCCGGGGGCACCGTCCCTATCTTCGACAACAGGACGGCATCCGCCG
TAAGCCCATGAACTGAAAGG

Product: ABC transporter substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 572; Mature: 572

Protein sequence:

>572_residues
MDESPNKYFRFYAVIHPEAQMRLQQQYEQLYLAYGDAPSQPGLSQLAELWRCSERNARLQLARMREQGWLEWRAGRGRGH
RSTLSLLRRPDELEWQQLQRMLARGQLEQAFSRLEPARQQRLLASLPQHLGAGDSGRSLRIPIPHAPLTLDPQRVNARLE
SHLVRQIFDRLCRHDRLGQVLRPALAHHWEADPEGRNWRFWLRPGLRFHDGGPLDAETAAASLLRLKQPDNPYHALYAHL
RRVDVHDALSFSCRLTEADHLWPQRLATANASIVPMRRSQDFERMPVGSGPFRVELHSPQRLKLAAFEQHYRERALLDSI
ELWIIPSPAEQDFHLRLEYGSQRGATMLQSACTYLMLSPTSRRIPAGQRLPLMRFLAEPHPVAACDERAPALGLQPGWRH
PRPAPSPPPRLDAQRLTLFHYDLPCFPPLAAALAERLSRLGIGLDIRCLTRREFFDSAAWRGQADLILSSELLHDDRDYG
MFEWLSGCSTLQLGLSPDASARLERDMRGLKAEAERAARQDGYRRAGDWLVAEGWMLPLSHETLGHDASPQLAGLQLGGN
GWTDFAGLWLRA

Sequences:

>Translated_572_residues
MDESPNKYFRFYAVIHPEAQMRLQQQYEQLYLAYGDAPSQPGLSQLAELWRCSERNARLQLARMREQGWLEWRAGRGRGH
RSTLSLLRRPDELEWQQLQRMLARGQLEQAFSRLEPARQQRLLASLPQHLGAGDSGRSLRIPIPHAPLTLDPQRVNARLE
SHLVRQIFDRLCRHDRLGQVLRPALAHHWEADPEGRNWRFWLRPGLRFHDGGPLDAETAAASLLRLKQPDNPYHALYAHL
RRVDVHDALSFSCRLTEADHLWPQRLATANASIVPMRRSQDFERMPVGSGPFRVELHSPQRLKLAAFEQHYRERALLDSI
ELWIIPSPAEQDFHLRLEYGSQRGATMLQSACTYLMLSPTSRRIPAGQRLPLMRFLAEPHPVAACDERAPALGLQPGWRH
PRPAPSPPPRLDAQRLTLFHYDLPCFPPLAAALAERLSRLGIGLDIRCLTRREFFDSAAWRGQADLILSSELLHDDRDYG
MFEWLSGCSTLQLGLSPDASARLERDMRGLKAEAERAARQDGYRRAGDWLVAEGWMLPLSHETLGHDASPQLAGLQLGGN
GWTDFAGLWLRA
>Mature_572_residues
MDESPNKYFRFYAVIHPEAQMRLQQQYEQLYLAYGDAPSQPGLSQLAELWRCSERNARLQLARMREQGWLEWRAGRGRGH
RSTLSLLRRPDELEWQQLQRMLARGQLEQAFSRLEPARQQRLLASLPQHLGAGDSGRSLRIPIPHAPLTLDPQRVNARLE
SHLVRQIFDRLCRHDRLGQVLRPALAHHWEADPEGRNWRFWLRPGLRFHDGGPLDAETAAASLLRLKQPDNPYHALYAHL
RRVDVHDALSFSCRLTEADHLWPQRLATANASIVPMRRSQDFERMPVGSGPFRVELHSPQRLKLAAFEQHYRERALLDSI
ELWIIPSPAEQDFHLRLEYGSQRGATMLQSACTYLMLSPTSRRIPAGQRLPLMRFLAEPHPVAACDERAPALGLQPGWRH
PRPAPSPPPRLDAQRLTLFHYDLPCFPPLAAALAERLSRLGIGLDIRCLTRREFFDSAAWRGQADLILSSELLHDDRDYG
MFEWLSGCSTLQLGLSPDASARLERDMRGLKAEAERAARQDGYRRAGDWLVAEGWMLPLSHETLGHDASPQLAGLQLGGN
GWTDFAGLWLRA

Specific function: Activates the small RNA gene sgrS under glucose- phosphate stress conditions as well as yfdZ. Represses its own transcription under both stress and non-stress conditions. Might act as a sensor of the intracellular accumulation of phosphoglucose by binding

COG id: COG4533

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786256, Length=568, Percent_Identity=27.9929577464789, Blast_Score=182, Evalue=6e-47,
Organism=Escherichia coli, GI1786650, Length=570, Percent_Identity=25.4385964912281, Blast_Score=139, Evalue=4e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 65365; Mature: 65365

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDESPNKYFRFYAVIHPEAQMRLQQQYEQLYLAYGDAPSQPGLSQLAELWRCSERNARLQ
CCCCCCCEEEEEEEECCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCCCCCHHH
LARMREQGWLEWRAGRGRGHRSTLSLLRRPDELEWQQLQRMLARGQLEQAFSRLEPARQQ
HHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
RLLASLPQHLGAGDSGRSLRIPIPHAPLTLDPQRVNARLESHLVRQIFDRLCRHDRLGQV
HHHHHHHHHHCCCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPALAHHWEADPEGRNWRFWLRPGLRFHDGGPLDAETAAASLLRLKQPDNPYHALYAHL
HHHHHHHCCCCCCCCCCEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
RRVDVHDALSFSCRLTEADHLWPQRLATANASIVPMRRSQDFERMPVGSGPFRVELHSPQ
HHCCHHHHHEEEEEECCHHHHCHHHHHHCCCCEEECCCCCCHHCCCCCCCCEEEEECCCC
RLKLAAFEQHYRERALLDSIELWIIPSPAEQDFHLRLEYGSQRGATMLQSACTYLMLSPT
CCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHEEEECCC
SRRIPAGQRLPLMRFLAEPHPVAACDERAPALGLQPGWRHPRPAPSPPPRLDAQRLTLFH
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
YDLPCFPPLAAALAERLSRLGIGLDIRCLTRREFFDSAAWRGQADLILSSELLHDDRDYG
ECCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCC
MFEWLSGCSTLQLGLSPDASARLERDMRGLKAEAERAARQDGYRRAGDWLVAEGWMLPLS
HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCEEEECC
HETLGHDASPQLAGLQLGGNGWTDFAGLWLRA
CHHCCCCCCCCEEEEEECCCCCCCHHHHEECC
>Mature Secondary Structure
MDESPNKYFRFYAVIHPEAQMRLQQQYEQLYLAYGDAPSQPGLSQLAELWRCSERNARLQ
CCCCCCCEEEEEEEECCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHCCCCCCHHH
LARMREQGWLEWRAGRGRGHRSTLSLLRRPDELEWQQLQRMLARGQLEQAFSRLEPARQQ
HHHHHHCCCEEEECCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
RLLASLPQHLGAGDSGRSLRIPIPHAPLTLDPQRVNARLESHLVRQIFDRLCRHDRLGQV
HHHHHHHHHHCCCCCCCEEEEECCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRPALAHHWEADPEGRNWRFWLRPGLRFHDGGPLDAETAAASLLRLKQPDNPYHALYAHL
HHHHHHHCCCCCCCCCCEEEEECCCCEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHH
RRVDVHDALSFSCRLTEADHLWPQRLATANASIVPMRRSQDFERMPVGSGPFRVELHSPQ
HHCCHHHHHEEEEEECCHHHHCHHHHHHCCCCEEECCCCCCHHCCCCCCCCEEEEECCCC
RLKLAAFEQHYRERALLDSIELWIIPSPAEQDFHLRLEYGSQRGATMLQSACTYLMLSPT
CCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCEEEEEEECCCCCHHHHHHHHHEEEECCC
SRRIPAGQRLPLMRFLAEPHPVAACDERAPALGLQPGWRHPRPAPSPPPRLDAQRLTLFH
CCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
YDLPCFPPLAAALAERLSRLGIGLDIRCLTRREFFDSAAWRGQADLILSSELLHDDRDYG
ECCCCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCCCEEEEHHHHCCCCCCC
MFEWLSGCSTLQLGLSPDASARLERDMRGLKAEAERAARQDGYRRAGDWLVAEGWMLPLS
HHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCEEEECCEEEECC
HETLGHDASPQLAGLQLGGNGWTDFAGLWLRA
CHHCCCCCCCCEEEEEECCCCCCCHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA