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The map label for this gene is nifU [H]

Identifier: 34496548

GI number: 34496548

Start: 1139179

End: 1139562

Strand: Reverse

Name: nifU [H]

Synonym: CV_1093

Alternate gene names: 34496548

Gene position: 1139562-1139179 (Counterclockwise)

Preceding gene: 34496549

Following gene: 34496547

Centisome position: 23.99

GC content: 61.98

Gene sequence:

>384_bases
ATGGCATATAGCGAAAAAGTGTTGGATCACTACGAAAATCCGCGCAACGTCGGCTCGTTCGACAAGGGCGACGACAGCAT
CGGCACCGGCATGGTCGGCGCGCCGGCCTGTGGCGACGTGATGAAGCTGCAGATCAAGGTGGGCGCGGACGGCGTGATCG
AAGACGCCAAGTTCAAGACCTACGGCTGCGGCTCCGCCATCGCCTCCTCGTCCCTGGTGACCGAGTGGGTGAAGGGCAAG
TCGCTGGACGAGGCGCTGGCGATCAAGAACACCGCCATCGCCGAAGAGCTGGCGCTGCCGCCGGTGAAGATCCACTGCTC
CATCCTGGCCGAAGACGCGATCAAGGCCGCGGTGGAAGACTACAAGCAGAAACACGGCAAGTAA

Upstream 100 bases:

>100_bases
AGGACGGCGTGGACCTGAACAGCGTTCAATGGGCCGCCCACTGAGCCGATAACAGATTACCGGCCGCGGCGCGCGCTGCG
GCCTTGCAGGAGCGAAAGAC

Downstream 100 bases:

>100_bases
GCGGAGGCGACCGATGGCACTCACCCTTTCCGAACGCGCCGCCCAGCATGTCGGCGCCTTCCTCGCCAAGCGCGGCAAGG
GCCTCGGCGTGCGCCTGGGC

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 127; Mature: 126

Protein sequence:

>127_residues
MAYSEKVLDHYENPRNVGSFDKGDDSIGTGMVGAPACGDVMKLQIKVGADGVIEDAKFKTYGCGSAIASSSLVTEWVKGK
SLDEALAIKNTAIAEELALPPVKIHCSILAEDAIKAAVEDYKQKHGK

Sequences:

>Translated_127_residues
MAYSEKVLDHYENPRNVGSFDKGDDSIGTGMVGAPACGDVMKLQIKVGADGVIEDAKFKTYGCGSAIASSSLVTEWVKGK
SLDEALAIKNTAIAEELALPPVKIHCSILAEDAIKAAVEDYKQKHGK
>Mature_126_residues
AYSEKVLDHYENPRNVGSFDKGDDSIGTGMVGAPACGDVMKLQIKVGADGVIEDAKFKTYGCGSAIASSSLVTEWVKGKS
LDEALAIKNTAIAEELALPPVKIHCSILAEDAIKAAVEDYKQKHGK

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=123, Percent_Identity=73.9837398373984, Blast_Score=195, Evalue=9e-51,
Organism=Homo sapiens, GI24307953, Length=123, Percent_Identity=73.1707317073171, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1788878, Length=125, Percent_Identity=84.8, Blast_Score=223, Evalue=2e-60,
Organism=Caenorhabditis elegans, GI17543474, Length=125, Percent_Identity=70.4, Blast_Score=190, Evalue=1e-49,
Organism=Saccharomyces cerevisiae, GI6324800, Length=123, Percent_Identity=70.7317073170732, Blast_Score=184, Evalue=5e-48,
Organism=Saccharomyces cerevisiae, GI6325122, Length=125, Percent_Identity=68.8, Blast_Score=182, Evalue=1e-47,
Organism=Drosophila melanogaster, GI21355597, Length=125, Percent_Identity=75.2, Blast_Score=196, Evalue=2e-51,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 13441; Mature: 13310

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSEKVLDHYENPRNVGSFDKGDDSIGTGMVGAPACGDVMKLQIKVGADGVIEDAKFKT
CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKSLDEALAIKNTAIAEELALPPVKIHCSILAEDAIKAAVED
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKQKHGK
HHHHCCC
>Mature Secondary Structure 
AYSEKVLDHYENPRNVGSFDKGDDSIGTGMVGAPACGDVMKLQIKVGADGVIEDAKFKT
CCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
YGCGSAIASSSLVTEWVKGKSLDEALAIKNTAIAEELALPPVKIHCSILAEDAIKAAVED
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
YKQKHGK
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]