| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is irgA [H]
Identifier: 34496474
GI number: 34496474
Start: 1058883
End: 1061567
Strand: Reverse
Name: irgA [H]
Synonym: CV_1019
Alternate gene names: 34496474
Gene position: 1061567-1058883 (Counterclockwise)
Preceding gene: 34496476
Following gene: 34496472
Centisome position: 22.34
GC content: 65.33
Gene sequence:
>2685_bases GTGCATTCCGCGCCCATCCCCCTCCCACTCAAGCTGCTGCCCGCCCTGCTGCTGCTCGCCGCCCTGCCGACCCTGGCCGA CACCCCATCCGCCGAATCGCTGGAGAGCGTGACCGTCACCGGCTCGCGCATCGCCCGCTCCGCCAAGGAAGGCCCGACCA GCGTGACGGTAATCACCGGCGCGGACATAGAAAAGCAGGGCTACACCAACGTCTACGACGCGCTGAACAATCTGACGCAG AACACCGGCTTCACCCAAGGCGCCGACTTCGGCAACACCTTCACCCCGGCCGCCAACGCCATCAGCCTGCGCGGCCTCGG CCCCAACCACACGCTGACGCTGATCAACGGCCGCCGGATGGCGGACTACCCCATCGCTTACGAAGGCCAGGTCAATTTCG TCAATCTGGCCAACATCCCGTCGGCGCTGATCGACCGCATCGAGATCCTGAATGGCGGCGCATCCGCCATTTACGGCTCG GACGCCATCGCCGGCGTGGTCAACATCATCCTGAAGAAGAAAACCGACGGCGCCTCGATCAACGTCAAGATCGGCGGCGC CGAGCATCACGGCGGCGAAAACGCGCGGCTGCAGCTGACCGGCGGCAAGAGCTGGGACCAGCTCAGCGCGATCTACGGAC TGGAAATCAGCCAGCGCAACCCGATCTGGTCCCGCCAACGCGGCTTCATGTCCGACTCCACCGCCCAGGGCGAAGCGCCG TCTCCCATCCTGGCCCGGCGCATCGCCGGCGGCGGCTATCTGGACGCCGGCAGCGCCTGCGGCAACTTCTCGGGCATGTT CGCCGGCAGCGTCTCCACCGTAGGCAACAGCCAGAAGGGCTACTGCGCCAGCGGACTGCTGAAGCCGTCATACTGGACGA TACAGACCGCCAATCAGAGCCAGAGCGGCTTCCTCAGCCTCAGCTATCTGGCCAATCCGCATGTCGAACTGTTCAGCGAC GCGATGATTGGACTCAACCACACGGAAAACAACACCCGCGGCCCCAACTGGACCGCCGCCGCCGGCCAAGGCAACTACTT CCGGAACCAGAACACCGGCAATTACGAAATCTGGAACAAGCGCTTCGCCCCCGAAGAGCTGGGCGGGACCAGCAACTACA ACCGCAAGTGGGATGATCTCGCCGCCAACCTGACGCTGGGCGCGCGCGGCGAGCTGACGGGCAGCTGGAATTACGAAGCG GCGTACAACGCATCGCTCTACACCAGCCGCGCCACCACGCCGATGCTGCTGTCCGGCGTCAACGCCTACTTTCTCGGCCC GCAGCTGGGCGCCGACGGCAGCGGCATCCCCATCTACGCGCCCAACCTCGCCCGCTTCTATCAGCCGCTGACGCCGGCCC AGGCCTCCGGACTGATCGGCGACAGCAACAGCCACAACAAATCCTGGCTGCAAGTGCTCAGCCTGAGCGCCAGCGGCGAG GCCTTCCAATTGCCGGCCGGCCCCGCCAAATTGGCGGGCCTGCTGGAATGGGGCAGCCAGGGCTTCAGCAACGATCCCGA CCAGCGGCTGAATCAGGGCGTGTTCTACAACGCCAACCCCGCCATCGGCGCCAGCGGCTCCCGCTCGCGCGAGGCGGCCG GCGCCGAGTTGCTGCTGCCGCTGGCCAAGCCGCTCAACCTGACGCTGTCCGGCCGCTATGACCGCTACCAGATCACCGGC AACAACGAGGGGAAATTCACCTACGGCGCAGGCCTGGAATACCGCCCCATCGGCAGCCTGCTGCTGCGCGGCAACTACGC CACCAGCTTCCGCGCGCCGGACATGAGCTACCTGTTCCAAACCCAGACCCGCGGCTACTACTCGTCGACCACCGACTACT GGCGCTGCGCGCAATCCGGCCAACCGCTGGCCAGCTGCCAGTACGCCGGCGTCTCGCCCGGCTCCAACTACGTCAGCAAC GGCAACCCCGGCCTGAAGCCGGAAAGCGGCAAGTCGTACGGCTTCGGCTTCGTCTGGTCTCCCAGCCGCGACGCCGACCT CTCGCTCGACTACTGGAACATCACGATAGACGATCTGGTCACCACCCTCAGCGCGGACAAGCTGCTGCAGGACGAGGCCC GCTGCCGCGCCGGCGGCTACGACGGCGGCTCGGCGCTGTGCCGCGACGCGCTGTCCCGCATCGTGCGCAATCCGGCCAAC GCGCTGGTGGATCCTGGCGCGATCAACACCATCATCGTCAACCCGATCAACGCCGCCAGCGAACGTACCAGCGGCATCGA CCTGAGCGGCAAATACCGGTTGCGCACCGCCAGACTGGGCGATTTCCTGTTCAAGGCCGCCTACACCAAGGTGCTGACCC ACACCTACCAGCAATTCGCCAGCGATCCGGCCCAGAACGAATTGACCGACATGAGCAACACCGACTGGCCGGACAAGCTG GATTTCACCACCACCTGGAATATCGGCGACTGGTCGTCCACGCTGCTGCTGACCCGCTACGGCAAGATCCCGAACGGCGC CGGCACCGGCTACCTGACGCCGACCGTGCTCGCCAACCTGAGCGTGACCTACCAGGCCAGCAAGAAAACCTCGATAGGCG TGATCGTCAACAACCTGCAGGACTTCATCAAGAAAGACTATACGGGAGGCTGGCCGTACTACCCGGTGGGCAGTTACACG CCCTACGGCCGGCAGGCCTGGCTGGAACTGAACCATAAGTTCTAA
Upstream 100 bases:
>100_bases ATATCCCGCTGCGTCATTTGCATTGCCATTTTTCTTCGCACCGCAAAAATGACAAAGAGATATCCTGTTCTTCCCAACAT CCAGACGAGAACAGGCTCCC
Downstream 100 bases:
>100_bases GTCGGAAACGCGAACGGGATGCCAAGGCATCCCGTTTTCACGGCCCACTCCACCGATTGACAGAAACGAAAAAAGCCCCG CATTTTCATGCGAGGCTTTT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 894; Mature: 894
Protein sequence:
>894_residues MHSAPIPLPLKLLPALLLLAALPTLADTPSAESLESVTVTGSRIARSAKEGPTSVTVITGADIEKQGYTNVYDALNNLTQ NTGFTQGADFGNTFTPAANAISLRGLGPNHTLTLINGRRMADYPIAYEGQVNFVNLANIPSALIDRIEILNGGASAIYGS DAIAGVVNIILKKKTDGASINVKIGGAEHHGGENARLQLTGGKSWDQLSAIYGLEISQRNPIWSRQRGFMSDSTAQGEAP SPILARRIAGGGYLDAGSACGNFSGMFAGSVSTVGNSQKGYCASGLLKPSYWTIQTANQSQSGFLSLSYLANPHVELFSD AMIGLNHTENNTRGPNWTAAAGQGNYFRNQNTGNYEIWNKRFAPEELGGTSNYNRKWDDLAANLTLGARGELTGSWNYEA AYNASLYTSRATTPMLLSGVNAYFLGPQLGADGSGIPIYAPNLARFYQPLTPAQASGLIGDSNSHNKSWLQVLSLSASGE AFQLPAGPAKLAGLLEWGSQGFSNDPDQRLNQGVFYNANPAIGASGSRSREAAGAELLLPLAKPLNLTLSGRYDRYQITG NNEGKFTYGAGLEYRPIGSLLLRGNYATSFRAPDMSYLFQTQTRGYYSSTTDYWRCAQSGQPLASCQYAGVSPGSNYVSN GNPGLKPESGKSYGFGFVWSPSRDADLSLDYWNITIDDLVTTLSADKLLQDEARCRAGGYDGGSALCRDALSRIVRNPAN ALVDPGAINTIIVNPINAASERTSGIDLSGKYRLRTARLGDFLFKAAYTKVLTHTYQQFASDPAQNELTDMSNTDWPDKL DFTTTWNIGDWSSTLLLTRYGKIPNGAGTGYLTPTVLANLSVTYQASKKTSIGVIVNNLQDFIKKDYTGGWPYYPVGSYT PYGRQAWLELNHKF
Sequences:
>Translated_894_residues MHSAPIPLPLKLLPALLLLAALPTLADTPSAESLESVTVTGSRIARSAKEGPTSVTVITGADIEKQGYTNVYDALNNLTQ NTGFTQGADFGNTFTPAANAISLRGLGPNHTLTLINGRRMADYPIAYEGQVNFVNLANIPSALIDRIEILNGGASAIYGS DAIAGVVNIILKKKTDGASINVKIGGAEHHGGENARLQLTGGKSWDQLSAIYGLEISQRNPIWSRQRGFMSDSTAQGEAP SPILARRIAGGGYLDAGSACGNFSGMFAGSVSTVGNSQKGYCASGLLKPSYWTIQTANQSQSGFLSLSYLANPHVELFSD AMIGLNHTENNTRGPNWTAAAGQGNYFRNQNTGNYEIWNKRFAPEELGGTSNYNRKWDDLAANLTLGARGELTGSWNYEA AYNASLYTSRATTPMLLSGVNAYFLGPQLGADGSGIPIYAPNLARFYQPLTPAQASGLIGDSNSHNKSWLQVLSLSASGE AFQLPAGPAKLAGLLEWGSQGFSNDPDQRLNQGVFYNANPAIGASGSRSREAAGAELLLPLAKPLNLTLSGRYDRYQITG NNEGKFTYGAGLEYRPIGSLLLRGNYATSFRAPDMSYLFQTQTRGYYSSTTDYWRCAQSGQPLASCQYAGVSPGSNYVSN GNPGLKPESGKSYGFGFVWSPSRDADLSLDYWNITIDDLVTTLSADKLLQDEARCRAGGYDGGSALCRDALSRIVRNPAN ALVDPGAINTIIVNPINAASERTSGIDLSGKYRLRTARLGDFLFKAAYTKVLTHTYQQFASDPAQNELTDMSNTDWPDKL DFTTTWNIGDWSSTLLLTRYGKIPNGAGTGYLTPTVLANLSVTYQASKKTSIGVIVNNLQDFIKKDYTGGWPYYPVGSYT PYGRQAWLELNHKF >Mature_894_residues MHSAPIPLPLKLLPALLLLAALPTLADTPSAESLESVTVTGSRIARSAKEGPTSVTVITGADIEKQGYTNVYDALNNLTQ NTGFTQGADFGNTFTPAANAISLRGLGPNHTLTLINGRRMADYPIAYEGQVNFVNLANIPSALIDRIEILNGGASAIYGS DAIAGVVNIILKKKTDGASINVKIGGAEHHGGENARLQLTGGKSWDQLSAIYGLEISQRNPIWSRQRGFMSDSTAQGEAP SPILARRIAGGGYLDAGSACGNFSGMFAGSVSTVGNSQKGYCASGLLKPSYWTIQTANQSQSGFLSLSYLANPHVELFSD AMIGLNHTENNTRGPNWTAAAGQGNYFRNQNTGNYEIWNKRFAPEELGGTSNYNRKWDDLAANLTLGARGELTGSWNYEA AYNASLYTSRATTPMLLSGVNAYFLGPQLGADGSGIPIYAPNLARFYQPLTPAQASGLIGDSNSHNKSWLQVLSLSASGE AFQLPAGPAKLAGLLEWGSQGFSNDPDQRLNQGVFYNANPAIGASGSRSREAAGAELLLPLAKPLNLTLSGRYDRYQITG NNEGKFTYGAGLEYRPIGSLLLRGNYATSFRAPDMSYLFQTQTRGYYSSTTDYWRCAQSGQPLASCQYAGVSPGSNYVSN GNPGLKPESGKSYGFGFVWSPSRDADLSLDYWNITIDDLVTTLSADKLLQDEARCRAGGYDGGSALCRDALSRIVRNPAN ALVDPGAINTIIVNPINAASERTSGIDLSGKYRLRTARLGDFLFKAAYTKVLTHTYQQFASDPAQNELTDMSNTDWPDKL DFTTTWNIGDWSSTLLLTRYGKIPNGAGTGYLTPTVLANLSVTYQASKKTSIGVIVNNLQDFIKKDYTGGWPYYPVGSYT PYGRQAWLELNHKF
Specific function: Involved in the initial step of iron uptake by binding ferric vibriobactin, an iron chelatin siderophore that allows V.cholerae to extract iron from the environment [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=154, Percent_Identity=33.1168831168831, Blast_Score=83, Evalue=9e-17, Organism=Escherichia coli, GI1790405, Length=197, Percent_Identity=31.4720812182741, Blast_Score=76, Evalue=1e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 95980; Mature: 95980
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHSAPIPLPLKLLPALLLLAALPTLADTPSAESLESVTVTGSRIARSAKEGPTSVTVITG CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCCEEEEEEC ADIEKQGYTNVYDALNNLTQNTGFTQGADFGNTFTPAANAISLRGLGPNHTLTLINGRRM CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCEE ADYPIAYEGQVNFVNLANIPSALIDRIEILNGGASAIYGSDAIAGVVNIILKKKTDGASI ECCCEEECCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHEECCCCCEE NVKIGGAEHHGGENARLQLTGGKSWDQLSAIYGLEISQRNPIWSRQRGFMSDSTAQGEAP EEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCEEECCCCCCHHHHCCCCCCCCCCCCCC SPILARRIAGGGYLDAGSACGNFSGMFAGSVSTVGNSQKGYCASGLLKPSYWTIQTANQS CHHHHHHHCCCCCCCCCCCCCCCCCEECCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCC QSGFLSLSYLANPHVELFSDAMIGLNHTENNTRGPNWTAAAGQGNYFRNQNTGNYEIWNK CCCCEEEEECCCCCHHHHCCHHEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCC RFAPEELGGTSNYNRKWDDLAANLTLGARGELTGSWNYEAAYNASLYTSRATTPMLLSGV CCCHHHCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCEEECCEEEECCCCCHHHHHCC NAYFLGPQLGADGSGIPIYAPNLARFYQPLTPAQASGLIGDSNSHNKSWLQVLSLSASGE CEEEECCCCCCCCCCCCEECCCHHHHHCCCCCCHHCCCCCCCCCCCHHEEHEEEECCCCC AFQLPAGPAKLAGLLEWGSQGFSNDPDQRLNQGVFYNANPAIGASGSRSREAAGAELLLP EEECCCCHHHHHHHHHHCCCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCHHCCCEEEEE LAKPLNLTLSGRYDRYQITGNNEGKFTYGAGLEYRPIGSLLLRGNYATSFRAPDMSYLFQ CCCCCEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHEE TQTRGYYSSTTDYWRCAQSGQPLASCQYAGVSPGSNYVSNGNPGLKPESGKSYGFGFVWS HHCCCCCCCCCHHHHHHCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC PSRDADLSLDYWNITIDDLVTTLSADKLLQDEARCRAGGYDGGSALCRDALSRIVRNPAN CCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH ALVDPGAINTIIVNPINAASERTSGIDLSGKYRLRTARLGDFLFKAAYTKVLTHTYQQFA HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH SDPAQNELTDMSNTDWPDKLDFTTTWNIGDWSSTLLLTRYGKIPNGAGTGYLTPTVLANL CCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHEEE SVTYQASKKTSIGVIVNNLQDFIKKDYTGGWPYYPVGSYTPYGRQAWLELNHKF EEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCC >Mature Secondary Structure MHSAPIPLPLKLLPALLLLAALPTLADTPSAESLESVTVTGSRIARSAKEGPTSVTVITG CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHCCCCCEEEEEEC ADIEKQGYTNVYDALNNLTQNTGFTQGADFGNTFTPAANAISLRGLGPNHTLTLINGRRM CCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEECCEE ADYPIAYEGQVNFVNLANIPSALIDRIEILNGGASAIYGSDAIAGVVNIILKKKTDGASI ECCCEEECCCEEEEECCCCCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHEECCCCCEE NVKIGGAEHHGGENARLQLTGGKSWDQLSAIYGLEISQRNPIWSRQRGFMSDSTAQGEAP EEEECCCCCCCCCCCEEEEECCCCHHHHHHHHCEEECCCCCCHHHHCCCCCCCCCCCCCC SPILARRIAGGGYLDAGSACGNFSGMFAGSVSTVGNSQKGYCASGLLKPSYWTIQTANQS CHHHHHHHCCCCCCCCCCCCCCCCCEECCCHHHCCCCCCCCCCCCCCCCCEEEEEECCCC QSGFLSLSYLANPHVELFSDAMIGLNHTENNTRGPNWTAAAGQGNYFRNQNTGNYEIWNK CCCCEEEEECCCCCHHHHCCHHEECCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEECCC RFAPEELGGTSNYNRKWDDLAANLTLGARGELTGSWNYEAAYNASLYTSRATTPMLLSGV CCCHHHCCCCCCCCCCHHHHHEEEEECCCCCCCCCCCCCEEECCEEEECCCCCHHHHHCC NAYFLGPQLGADGSGIPIYAPNLARFYQPLTPAQASGLIGDSNSHNKSWLQVLSLSASGE CEEEECCCCCCCCCCCCEECCCHHHHHCCCCCCHHCCCCCCCCCCCHHEEHEEEECCCCC AFQLPAGPAKLAGLLEWGSQGFSNDPDQRLNQGVFYNANPAIGASGSRSREAAGAELLLP EEECCCCHHHHHHHHHHCCCCCCCCHHHHHHCCEEECCCCCCCCCCCCCCHHCCCEEEEE LAKPLNLTLSGRYDRYQITGNNEGKFTYGAGLEYRPIGSLLLRGNYATSFRAPDMSYLFQ CCCCCEEEEECCCEEEEEECCCCCCEEECCCCCCCCCCCEEEECCCCCCCCCCCHHHHEE TQTRGYYSSTTDYWRCAQSGQPLASCQYAGVSPGSNYVSNGNPGLKPESGKSYGFGFVWS HHCCCCCCCCCHHHHHHCCCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC PSRDADLSLDYWNITIDDLVTTLSADKLLQDEARCRAGGYDGGSALCRDALSRIVRNPAN CCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH ALVDPGAINTIIVNPINAASERTSGIDLSGKYRLRTARLGDFLFKAAYTKVLTHTYQQFA HHCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHH SDPAQNELTDMSNTDWPDKLDFTTTWNIGDWSSTLLLTRYGKIPNGAGTGYLTPTVLANL CCCCHHHHHCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCHHHHEEE SVTYQASKKTSIGVIVNNLQDFIKKDYTGGWPYYPVGSYTPYGRQAWLELNHKF EEEEECCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 1406279; 2174861 [H]