Definition Chromobacterium violaceum ATCC 12472 chromosome, complete genome.
Accession NC_005085
Length 4,751,080

Click here to switch to the map view.

The map label for this gene is 34496298

Identifier: 34496298

GI number: 34496298

Start: 876024

End: 876842

Strand: Reverse

Name: 34496298

Synonym: CV_0843

Alternate gene names: NA

Gene position: 876842-876024 (Counterclockwise)

Preceding gene: 34496299

Following gene: 34496297

Centisome position: 18.46

GC content: 46.52

Gene sequence:

>819_bases
ATGAGTCATCGTCACGCAAAGAAGCACAAGCGCTCAAAAAAAGGACAAAATGTGCCGCCCTCTGACAGCCAAGAAATTGT
TCGCATTGGGTCGGCACTACTTGATCCAGAAACCCAAAAAATTGTGGTGTTCACGGAGAATATGCTGCTAAACCAGCTAC
GTCGTGATGGACCAAAGATCGAAGCATCCTTTGACCGTTTATGCGAGGACGATCTAATTCAGCTCAGCGCATTATTTAGC
AAAACTAACGGCCTAATTTATTCCGGCCTCACAATTGCCTCTCGTGAAGAAGATGAGCTACGCATTGCTTGCGCTCAGTT
GCTTATGAATGCCTCGAACTCATTCGGAGCTGCTGTTGCCGTACTACGTATGGGCTATGTCTTGCAGCCAGGCATCATCC
TTCGGTCACTGCTTGAAGCTGTATCCACCGCTCTATATCTAATTCAAAATCCAAATCACTTGCCGTCGTATCAGAACCAT
ACGCTGCAATCCCAAAAAACTATCGCAGTCGCCAAGAAAGCTGTGCCGCCTTTAGGTTCGCTTTATGGGCACTTCAGCGA
CAACTTCGCCCATATTGGTCGCCTGCATAAGTCCATAACACCTGTTAATGAGTACAGCGAAGAAAATGATGCATTAACCG
TCAACTTGAGCTCCCTTCGCATCGCAGCTTGGCTGCTATATGTTACGGCGGAACTGCTATTTAACGAACTTTTGGAAGTG
CCTCGGTACTGGCAAGCAGTGAAACAAGGCTACATGTATAACCCTTCTGAAGAGGAGAAGGCATGGATGAAGAGTTACTT
TCAGATGGAAAAACTATGA

Upstream 100 bases:

>100_bases
AATTTTAACGAGGAAAGACAAGTGCGCACCCAGGATATGCGTATTGATTAATTTAATATACACCTGCGCAGGTGTATATT
TCACGCCAGGCTTTTCAAGT

Downstream 100 bases:

>100_bases
GTCTGCTGAAACTTCCCATCCAAGCATCTCTTGCCAGCCTAACTAGTTGTTCAACAGGACGTCTACCAGCTTCACTGGCC
TCCTGTTAACGCTGGCGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MSHRHAKKHKRSKKGQNVPPSDSQEIVRIGSALLDPETQKIVVFTENMLLNQLRRDGPKIEASFDRLCEDDLIQLSALFS
KTNGLIYSGLTIASREEDELRIACAQLLMNASNSFGAAVAVLRMGYVLQPGIILRSLLEAVSTALYLIQNPNHLPSYQNH
TLQSQKTIAVAKKAVPPLGSLYGHFSDNFAHIGRLHKSITPVNEYSEENDALTVNLSSLRIAAWLLYVTAELLFNELLEV
PRYWQAVKQGYMYNPSEEEKAWMKSYFQMEKL

Sequences:

>Translated_272_residues
MSHRHAKKHKRSKKGQNVPPSDSQEIVRIGSALLDPETQKIVVFTENMLLNQLRRDGPKIEASFDRLCEDDLIQLSALFS
KTNGLIYSGLTIASREEDELRIACAQLLMNASNSFGAAVAVLRMGYVLQPGIILRSLLEAVSTALYLIQNPNHLPSYQNH
TLQSQKTIAVAKKAVPPLGSLYGHFSDNFAHIGRLHKSITPVNEYSEENDALTVNLSSLRIAAWLLYVTAELLFNELLEV
PRYWQAVKQGYMYNPSEEEKAWMKSYFQMEKL
>Mature_271_residues
SHRHAKKHKRSKKGQNVPPSDSQEIVRIGSALLDPETQKIVVFTENMLLNQLRRDGPKIEASFDRLCEDDLIQLSALFSK
TNGLIYSGLTIASREEDELRIACAQLLMNASNSFGAAVAVLRMGYVLQPGIILRSLLEAVSTALYLIQNPNHLPSYQNHT
LQSQKTIAVAKKAVPPLGSLYGHFSDNFAHIGRLHKSITPVNEYSEENDALTVNLSSLRIAAWLLYVTAELLFNELLEVP
RYWQAVKQGYMYNPSEEEKAWMKSYFQMEKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30691; Mature: 30559

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHRHAKKHKRSKKGQNVPPSDSQEIVRIGSALLDPETQKIVVFTENMLLNQLRRDGPKI
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCC
EASFDRLCEDDLIQLSALFSKTNGLIYSGLTIASREEDELRIACAQLLMNASNSFGAAVA
HHHHHHHHHHHHHHHHHHHHHCCCEEEECEEECCCCHHHHHHHHHHHHHHCCCCHHHHHH
VLRMGYVLQPGIILRSLLEAVSTALYLIQNPNHLPSYQNHTLQSQKTIAVAKKAVPPLGS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
LYGHFSDNFAHIGRLHKSITPVNEYSEENDALTVNLSSLRIAAWLLYVTAELLFNELLEV
HHHHHCCHHHHHHHHHHHCCCHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
PRYWQAVKQGYMYNPSEEEKAWMKSYFQMEKL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SHRHAKKHKRSKKGQNVPPSDSQEIVRIGSALLDPETQKIVVFTENMLLNQLRRDGPKI
CCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHCCCCC
EASFDRLCEDDLIQLSALFSKTNGLIYSGLTIASREEDELRIACAQLLMNASNSFGAAVA
HHHHHHHHHHHHHHHHHHHHHCCCEEEECEEECCCCHHHHHHHHHHHHHHCCCCHHHHHH
VLRMGYVLQPGIILRSLLEAVSTALYLIQNPNHLPSYQNHTLQSQKTIAVAKKAVPPLGS
HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
LYGHFSDNFAHIGRLHKSITPVNEYSEENDALTVNLSSLRIAAWLLYVTAELLFNELLEV
HHHHHCCHHHHHHHHHHHCCCHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
PRYWQAVKQGYMYNPSEEEKAWMKSYFQMEKL
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA