| Definition | Chromobacterium violaceum ATCC 12472 chromosome, complete genome. |
|---|---|
| Accession | NC_005085 |
| Length | 4,751,080 |
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The map label for this gene is 34496233
Identifier: 34496233
GI number: 34496233
Start: 801832
End: 802560
Strand: Reverse
Name: 34496233
Synonym: CV_0778
Alternate gene names: NA
Gene position: 802560-801832 (Counterclockwise)
Preceding gene: 34496238
Following gene: 34496232
Centisome position: 16.89
GC content: 59.67
Gene sequence:
>729_bases ATGAGCTTGTCCGATAAGTTACCGCAGACCAGCGATCGTCACGCCATGATGCAGCGCTTCCGTTCGCGCGAAGCCTGGCA CGTGATGAAGATACTGTCGGAGTTTGTCGAGTCGGCCGAGGAACTGCAAGGCATCACGCCGGCCGTCAGCATATTCGGCA GCGCGCGCACCCCGCGCGACCACAAGTATTACAAACTGACCGAAGACGTGGCCCGCCGCCTGTCCGACTCCGGTTTCTCT GTGATATCCGGCGGCGGCCCCGGCATCATGGAAGCCGCCAACAAGGGGGCATTCTACGGCAGAAGTCCGTCCGTTGCGCT GAACATCGTGCTGCCGCACGAACAGAAACCCAACGATTACCAAGACCTGGCGGTCAAGTTCAACCACTTCTTCAGCCGCA AGGTGATGTTCGTCAAGCACGCGATCGCCTATGTGGTGATGCCCGGCGGCTTCGGCACGCTGGACGAGATGTTCGAGGCG CTGACGCTGATCCAGACCGGCAAGAGCCGCAAGATTCCCATCATCCTGTGCTGCCACGAATTCTGGGCGGGCCTGCTCGA CTGGGTCAAGGAACGGCTGGTCAGCGAAGGCATGATCAATCCGGACGACCTGAACCTGATCCAGCTGATCGACGATCCGC AGCAAATCGTCGACACCATTTTCAAACACTACGAGACCCGCGGCTTCGAAGCGTTGCCCGAAGAGCGCGAGCAACTGCTC AACCTGTAG
Upstream 100 bases:
>100_bases GCGGCCATCCGGAGAACGCAAATCGGGCATCGCGTGAAAGGCGCGGTACAAATAAGAAGAGCCGTCGATCAATAACAATG TTTTCATAAGAGGCAGAAGT
Downstream 100 bases:
>100_bases AACCCATTTACGATCTTTTCCCGGACGCGGCGCTTTTCCGCCGGATGCGGGGCGCGGAAATCGCCCCGCCGCAGTATCAT TCACAACGCGGGGCATCAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MSLSDKLPQTSDRHAMMQRFRSREAWHVMKILSEFVESAEELQGITPAVSIFGSARTPRDHKYYKLTEDVARRLSDSGFS VISGGGPGIMEAANKGAFYGRSPSVALNIVLPHEQKPNDYQDLAVKFNHFFSRKVMFVKHAIAYVVMPGGFGTLDEMFEA LTLIQTGKSRKIPIILCCHEFWAGLLDWVKERLVSEGMINPDDLNLIQLIDDPQQIVDTIFKHYETRGFEALPEEREQLL NL
Sequences:
>Translated_242_residues MSLSDKLPQTSDRHAMMQRFRSREAWHVMKILSEFVESAEELQGITPAVSIFGSARTPRDHKYYKLTEDVARRLSDSGFS VISGGGPGIMEAANKGAFYGRSPSVALNIVLPHEQKPNDYQDLAVKFNHFFSRKVMFVKHAIAYVVMPGGFGTLDEMFEA LTLIQTGKSRKIPIILCCHEFWAGLLDWVKERLVSEGMINPDDLNLIQLIDDPQQIVDTIFKHYETRGFEALPEEREQLL NL >Mature_241_residues SLSDKLPQTSDRHAMMQRFRSREAWHVMKILSEFVESAEELQGITPAVSIFGSARTPRDHKYYKLTEDVARRLSDSGFSV ISGGGPGIMEAANKGAFYGRSPSVALNIVLPHEQKPNDYQDLAVKFNHFFSRKVMFVKHAIAYVVMPGGFGTLDEMFEAL TLIQTGKSRKIPIILCCHEFWAGLLDWVKERLVSEGMINPDDLNLIQLIDDPQQIVDTIFKHYETRGFEALPEEREQLLN L
Specific function: Unknown
COG id: COG1611
COG function: function code R; Predicted Rossmann fold nucleotide-binding protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27475; Mature: 27344
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSDKLPQTSDRHAMMQRFRSREAWHVMKILSEFVESAEELQGITPAVSIFGSARTPRD CCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC HKYYKLTEDVARRLSDSGFSVISGGGPGIMEAANKGAFYGRSPSVALNIVLPHEQKPNDY CHHEEHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHH QDLAVKFNHFFSRKVMFVKHAIAYVVMPGGFGTLDEMFEALTLIQTGKSRKIPIILCCHE HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHH FWAGLLDWVKERLVSEGMINPDDLNLIQLIDDPQQIVDTIFKHYETRGFEALPEEREQLL HHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHC NL CC >Mature Secondary Structure SLSDKLPQTSDRHAMMQRFRSREAWHVMKILSEFVESAEELQGITPAVSIFGSARTPRD CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCC HKYYKLTEDVARRLSDSGFSVISGGGPGIMEAANKGAFYGRSPSVALNIVLPHEQKPNDY CHHEEHHHHHHHHHCCCCCEEEECCCCHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHH QDLAVKFNHFFSRKVMFVKHAIAYVVMPGGFGTLDEMFEALTLIQTGKSRKIPIILCCHE HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEHHH FWAGLLDWVKERLVSEGMINPDDLNLIQLIDDPQQIVDTIFKHYETRGFEALPEEREQLL HHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHC NL CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA