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The map label for this gene is pecS [H]

Identifier: 34496032

GI number: 34496032

Start: 617748

End: 618245

Strand: Reverse

Name: pecS [H]

Synonym: CV_0577

Alternate gene names: 34496032

Gene position: 618245-617748 (Counterclockwise)

Preceding gene: 34496034

Following gene: 34496028

Centisome position: 13.01

GC content: 65.86

Gene sequence:

>498_bases
ATGCAGCACGCACCCGACCAAATTGACCGCATCGTCGCCCTTTGGAACGAAGTCCGCCCCGATCTGGACACCTCAGCCAC
CCAAGTGATCGGCCGCATCGTGCGGATGGAATACTTCATCACACGGCGAGTCCTTCAGGATCTGGCCCGCCACAATCTCA
ATGTAGGCGAATTCGACGTGCTGGCGGCGCTGCGCCGCGGCGGCGAGCCCTACCAGCTTTCGCCCAACCAGTTGCAGGGC
ATGGTGCTGATCTCGTCCGGCGCGCTGACCAACCGCATCAACCGGCTGGAGGAAGCCGGCCTGGTCAGCCGCTCTCCGGA
CCCGGACGACCGCCGCGGCGTGATCGTCACGCTGACGGCCAAGGGCCTGCAGGTGATCGAAGACGCCGCCGGCCACCACC
TGGCCGCCGAGGCCGAGCTGATCGAGATGCTGGACGCCGACGAGCGCCAGACGCTGGCCCGCCTGTTGAAGAAGATGCTG
CAGGCGCAGGAAGACTGA

Upstream 100 bases:

>100_bases
GCGGCAATTGTCTTTAGATGAAGATAGTATATTTTGAAGTCGTGATACTCTTGCGCCCGACCGGATTTGCCGCATTTACC
TTTGCCCAGGAACCCGCAGC

Downstream 100 bases:

>100_bases
GCAGGCAAACAGGCCGCCCCCAGGCGGCCTTTGTTTCGCCCGTCGCCCAGCAAGGCCACATCGAGCTTTTCCTCCCCTTG
AGCGACGGGGACGCGTCCGA

Product: MarR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 165; Mature: 165

Protein sequence:

>165_residues
MQHAPDQIDRIVALWNEVRPDLDTSATQVIGRIVRMEYFITRRVLQDLARHNLNVGEFDVLAALRRGGEPYQLSPNQLQG
MVLISSGALTNRINRLEEAGLVSRSPDPDDRRGVIVTLTAKGLQVIEDAAGHHLAAEAELIEMLDADERQTLARLLKKML
QAQED

Sequences:

>Translated_165_residues
MQHAPDQIDRIVALWNEVRPDLDTSATQVIGRIVRMEYFITRRVLQDLARHNLNVGEFDVLAALRRGGEPYQLSPNQLQG
MVLISSGALTNRINRLEEAGLVSRSPDPDDRRGVIVTLTAKGLQVIEDAAGHHLAAEAELIEMLDADERQTLARLLKKML
QAQED
>Mature_165_residues
MQHAPDQIDRIVALWNEVRPDLDTSATQVIGRIVRMEYFITRRVLQDLARHNLNVGEFDVLAALRRGGEPYQLSPNQLQG
MVLISSGALTNRINRLEEAGLVSRSPDPDDRRGVIVTLTAKGLQVIEDAAGHHLAAEAELIEMLDADERQTLARLLKKML
QAQED

Specific function: Negative regulator of pectinase, cellulase, blue pigment production and virulence genes. Also binds to promoter sites in the pecS-pecM intergenic region and negatively autoregulate its expression as well as that of pecM [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081927, Length=151, Percent_Identity=33.7748344370861, Blast_Score=72, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR023187
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18455; Mature: 18455

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQHAPDQIDRIVALWNEVRPDLDTSATQVIGRIVRMEYFITRRVLQDLARHNLNVGEFDV
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LAALRRGGEPYQLSPNQLQGMVLISSGALTNRINRLEEAGLVSRSPDPDDRRGVIVTLTA
HHHHHCCCCCCCCCHHHHCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
KGLQVIEDAAGHHLAAEAELIEMLDADERQTLARLLKKMLQAQED
HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQHAPDQIDRIVALWNEVRPDLDTSATQVIGRIVRMEYFITRRVLQDLARHNLNVGEFDV
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
LAALRRGGEPYQLSPNQLQGMVLISSGALTNRINRLEEAGLVSRSPDPDDRRGVIVTLTA
HHHHHCCCCCCCCCHHHHCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC
KGLQVIEDAAGHHLAAEAELIEMLDADERQTLARLLKKMLQAQED
HHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8022282; 9194707 [H]