Click here to switch to the map view.

The map label for this gene is 339905973

Identifier: 339905973

GI number: 339905973

Start: 2638488

End: 2641064

Strand: Reverse

Name: 339905973

Synonym: NA

Alternate gene names: NA

Gene position: 2641064-2638488 (Counterclockwise)

Preceding gene: 238027950

Following gene: 238027947

Centisome position: 67.61

GC content: 66.86

Gene sequence:

>2577_bases
ATGGCCAAGATCGTTCACTGGGCGGCGTTCAAGCCGCCGGCCAACCTAGCACCCGACCAGCCGTACCGTTTGATCGGCAG
CGCGGTGGTCGGTGGTGCGGTCATTGGGACCGTGGCCTGGGCCGTGGCCATGGGCGTGGAGTGGTGGGTCGCCAGCAAGA
CCGGCGCGCTCGGCGGGGTCAGCCACATGCCCCTGTCCAAGCACGCGCTCTACTGGTTTGAAACGTTCCTCCACCGCGAG
ATGCGCAACCGTCCGTTCGCCGACAACGTGGCGGCTTACCAGTACGGACTGGACCAGATGAACTGGTGGCTGATCAAAGG
CAAGGCCGCCCTGGCGACGGTGCCCGGCCTCGGGGTTGCTGCTTACATCACGGTGAAGATGAACCGAGTGTACTGCAACA
GCCGACACTTGTCGGGCATGCAGTTCCACGACGGCAAGGACGCGGTGAAGCTCGCCGAGCAGGCGGTGCTCGAGCTGAAC
GGTGACCAGGCCCCGTTCCTCCCGTTACACCCGGAGCTGACCTGGTTGAGCCAACAGGCGTGGAGCACGTCGGCGATCAT
CATGGGCGCTGCCGGCGCCGGTAAGAGCGCGATCCTGGCCCACCTCACGTACGAGGCGATGGTCCAGAACGTCTTCATGG
TCATTATGGACGCCAAGGGCACGCAGTCCCATGTGATCCAAACGATCAACAAGAAGCTCGGGCGCTCGTCGGAGAACGTG
GCGACCATCAGCCCGTTCTCCGACCGCGACGCGGCCTGGGACATCGGGCGAGACCTCGTGCGGGAGGAAGACGCCACCGT
GTTCGCCAACGCGTACGTGCCGGCGTCGAAGGACCCAATGTGGTCCGAGGGCGCGCGGGGCATCCTGCGGGCCATCGTGT
TGGCGCTGATCGTCGAGTACCGCGTGGCGTGCGCCCGTGCTGAAGCGCTGGGCGTCGAGAAGCCCAAGCCCTGGCACTGG
GGCCACCTCTCGTTCCGGATCATGTCGGCGATGAAGGACATCTACGCCTGGGCGGCGGAGCACGACCCAGGGACCGCCCA
GCTCATCGCCGACTACGAGAAGAGCAACACGGTGAAGAGCTTCGAGGTCACGTTCCGCACGTTCTGCCAAGACATCCACA
AGCTGGGCAAGGCGTGGGGCGAACCGGCGGAAGGTCAGCCGAAGCGCCGTCGCGTGTCGCTGCGGCTGTTCGTCGACCGG
GTGGAGCGCAAGGGCCGCAAGGGTGTGCACCAGATCGTCCTGCGCAACAACCTGGAATACAAGTCCCTGACCAAGGGCTA
CCTGCTGGCGATGCACGCGTTCCTGACGGCGAAGATGCTCAGCCTGAACGACAACCCGACGGACGGCACCGGCCGCACGC
TCTTGTTCATGGAGGACGAGTTCACCAGCCAGGGCAAGAAGGAGTCGATTTTCGACGCGCTCGAACTGGGGCGATCGAAG
GGCATGGTCCACGTGATCGCGGTGCAGACCGAGGATGCGTTGATCGAACTGTACGGCCAGGAGGGCCGGGGCCGGATCTC
GGGCAACACCACGATCAAAATCCTGGGACGGGCAGCAGCGCCGGAGATGGGCGCGCAGATGGCCGCCAACTTCCCGAAGC
GCACGGTGCAGGTCACGCACCCGGGACGTCCTGCGGCGAAGGGCCAGCCCGAGACCCCCACCACCTACGAGAGCGTCGAG
GTGCCGGTGATCCGTCCGGAGGTGCTGTCGTCCACCCGGGACATGGGCAAGCAGCGCGCGTCCTGGCTGGGCAGGCGCCC
GGCTGGCATCAAGGCGGTGGTGCGGATCGGCGCGGACCTCTACCACCTGTTGTGGCCGTTCATCGAGAAGGACAAGATGC
CGTCGGCGTCGGACGCGAGCACGCCCCCGTTGGCCGCCTGGCTGGTGGGTGGGAAGGTGCCGGCGTTGAGCGACTACAAA
CCGATGGTTCAGGTCGAGAAGCTCAAGTTGGACCGCGACGCGGCAGCAGCAGCGGCAGCAACCGCGGAGATTCCGCCCGC
CACCACGAGCACCGCTCCCGGTGGTGTGGACCTCGACGCGATGCTCGAGGGGAGCCTGGCCGCCCAGGGTGAGCGCGGCC
CCGAACTCACGGGGCCGAGCGACCCCGGTTCGACCACCACACCGGCCGACCGCCTGCTGTCCGCGATGGAGCTGTACGAG
CTGGAAATGCAGCGGAAGAAGGAGACGGTGGTGGAGACCGTGGAGGTGGACGTCGAACTCGACAGCGAGGAGTACCAGCA
CGCCGTGGTCGACGCCGCGAACCTGCAGCGGGAGCAGGAACGCCGCGGCGACTGGCACGACCCGGGCGAGATGGACGAGT
CGGCCTCCCTCCTGCTCGAAGCGGTCGCGGGCCAGGTGGCGGAGGCGGTGATCCCCGGTGGGCACCTGGTCCTGGAAGGC
TTGAAGCTCGCCGAGGGCGCGCAGGGCCCGGCGAAAAACGTGGAGAACGTGATCGACAACCAGACCGGCGAGGTCCGTAC
GGTGACGGTGGTCGCGCCGAAGAAGCAGATCACCACCGTCCGGCAGGTGTCGGTGCGCACGCAGGCCCCGGAGAACGAGC
CCGAGCGCTCGATCTGA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: type IV secretory pathway VirD4 components-like protein

Products: NA

Alternate protein names: Type IV Secretory Pathway VirD4 Components; Type IV Secretory Pathway VirD4 Component; Type IV Secretory Protein Conjugation Protein TraD

Number of amino acids: Translated: 858; Mature: 857

Protein sequence:
NA

Sequences:

>Translated_858_residues
MAKIVHWAAFKPPANLAPDQPYRLIGSAVVGGAVIGTVAWAVAMGVEWWVASKTGALGGVSHMPLSKHALYWFETFLHRE
MRNRPFADNVAAYQYGLDQMNWWLIKGKAALATVPGLGVAAYITVKMNRVYCNSRHLSGMQFHDGKDAVKLAEQAVLELN
GDQAPFLPLHPELTWLSQQAWSTSAIIMGAAGAGKSAILAHLTYEAMVQNVFMVIMDAKGTQSHVIQTINKKLGRSSENV
ATISPFSDRDAAWDIGRDLVREEDATVFANAYVPASKDPMWSEGARGILRAIVLALIVEYRVACARAEALGVEKPKPWHW
GHLSFRIMSAMKDIYAWAAEHDPGTAQLIADYEKSNTVKSFEVTFRTFCQDIHKLGKAWGEPAEGQPKRRRVSLRLFVDR
VERKGRKGVHQIVLRNNLEYKSLTKGYLLAMHAFLTAKMLSLNDNPTDGTGRTLLFMEDEFTSQGKKESIFDALELGRSK
GMVHVIAVQTEDALIELYGQEGRGRISGNTTIKILGRAAAPEMGAQMAANFPKRTVQVTHPGRPAAKGQPETPTTYESVE
VPVIRPEVLSSTRDMGKQRASWLGRRPAGIKAVVRIGADLYHLLWPFIEKDKMPSASDASTPPLAAWLVGGKVPALSDYK
PMVQVEKLKLDRDAAAAAAATAEIPPATTSTAPGGVDLDAMLEGSLAAQGERGPELTGPSDPGSTTTPADRLLSAMELYE
LEMQRKKETVVETVEVDVELDSEEYQHAVVDAANLQREQERRGDWHDPGEMDESASLLLEAVAGQVAEAVIPGGHLVLEG
LKLAEGAQGPAKNVENVIDNQTGEVRTVTVVAPKKQITTVRQVSVRTQAPENEPERSI
>Mature_857_residues
AKIVHWAAFKPPANLAPDQPYRLIGSAVVGGAVIGTVAWAVAMGVEWWVASKTGALGGVSHMPLSKHALYWFETFLHREM
RNRPFADNVAAYQYGLDQMNWWLIKGKAALATVPGLGVAAYITVKMNRVYCNSRHLSGMQFHDGKDAVKLAEQAVLELNG
DQAPFLPLHPELTWLSQQAWSTSAIIMGAAGAGKSAILAHLTYEAMVQNVFMVIMDAKGTQSHVIQTINKKLGRSSENVA
TISPFSDRDAAWDIGRDLVREEDATVFANAYVPASKDPMWSEGARGILRAIVLALIVEYRVACARAEALGVEKPKPWHWG
HLSFRIMSAMKDIYAWAAEHDPGTAQLIADYEKSNTVKSFEVTFRTFCQDIHKLGKAWGEPAEGQPKRRRVSLRLFVDRV
ERKGRKGVHQIVLRNNLEYKSLTKGYLLAMHAFLTAKMLSLNDNPTDGTGRTLLFMEDEFTSQGKKESIFDALELGRSKG
MVHVIAVQTEDALIELYGQEGRGRISGNTTIKILGRAAAPEMGAQMAANFPKRTVQVTHPGRPAAKGQPETPTTYESVEV
PVIRPEVLSSTRDMGKQRASWLGRRPAGIKAVVRIGADLYHLLWPFIEKDKMPSASDASTPPLAAWLVGGKVPALSDYKP
MVQVEKLKLDRDAAAAAAATAEIPPATTSTAPGGVDLDAMLEGSLAAQGERGPELTGPSDPGSTTTPADRLLSAMELYEL
EMQRKKETVVETVEVDVELDSEEYQHAVVDAANLQREQERRGDWHDPGEMDESASLLLEAVAGQVAEAVIPGGHLVLEGL
KLAEGAQGPAKNVENVIDNQTGEVRTVTVVAPKKQITTVRQVSVRTQAPENEPERSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 93653; Mature: 93522

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKIVHWAAFKPPANLAPDQPYRLIGSAVVGGAVIGTVAWAVAMGVEWWVASKTGALGGV
CCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCC
SHMPLSKHALYWFETFLHREMRNRPFADNVAAYQYGLDQMNWWLIKGKAALATVPGLGVA
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEECCEEEEECCCCCEE
AYITVKMNRVYCNSRHLSGMQFHDGKDAVKLAEQAVLELNGDQAPFLPLHPELTWLSQQA
EEEEEEEEEEEECCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHC
WSTSAIIMGAAGAGKSAILAHLTYEAMVQNVFMVIMDAKGTQSHVIQTINKKLGRSSENV
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCE
ATISPFSDRDAAWDIGRDLVREEDATVFANAYVPASKDPMWSEGARGILRAIVLALIVEY
EEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
RVACARAEALGVEKPKPWHWGHLSFRIMSAMKDIYAWAAEHDPGTAQLIADYEKSNTVKS
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHCCCCEEH
FEVTFRTFCQDIHKLGKAWGEPAEGQPKRRRVSLRLFVDRVERKGRKGVHQIVLRNNLEY
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCH
KSLTKGYLLAMHAFLTAKMLSLNDNPTDGTGRTLLFMEDEFTSQGKKESIFDALELGRSK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHCCCCHHHHHHHHHHHCCC
GMVHVIAVQTEDALIELYGQEGRGRISGNTTIKILGRAAAPEMGAQMAANFPKRTVQVTH
CEEEEEEEECCCEEEEEECCCCCCEECCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEC
PGRPAAKGQPETPTTYESVEVPVIRPEVLSSTRDMGKQRASWLGRRPAGIKAVVRIGADL
CCCCCCCCCCCCCCCCCCEECCEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
YHLLWPFIEKDKMPSASDASTPPLAAWLVGGKVPALSDYKPMVQVEKLKLDRDAAAAAAA
HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
TAEIPPATTSTAPGGVDLDAMLEGSLAAQGERGPELTGPSDPGSTTTPADRLLSAMELYE
HCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LEMQRKKETVVETVEVDVELDSEEYQHAVVDAANLQREQERRGDWHDPGEMDESASLLLE
HHHHHHHHHHHEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AVAGQVAEAVIPGGHLVLEGLKLAEGAQGPAKNVENVIDNQTGEVRTVTVVAPKKQITTV
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEEECHHHHHHH
RQVSVRTQAPENEPERSI
HHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AKIVHWAAFKPPANLAPDQPYRLIGSAVVGGAVIGTVAWAVAMGVEWWVASKTGALGGV
CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCC
SHMPLSKHALYWFETFLHREMRNRPFADNVAAYQYGLDQMNWWLIKGKAALATVPGLGVA
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCEEEEECCEEEEECCCCCEE
AYITVKMNRVYCNSRHLSGMQFHDGKDAVKLAEQAVLELNGDQAPFLPLHPELTWLSQQA
EEEEEEEEEEEECCCCCCCCEECCCHHHHHHHHHHHHHCCCCCCCCEECCCCHHHHHHHC
WSTSAIIMGAAGAGKSAILAHLTYEAMVQNVFMVIMDAKGTQSHVIQTINKKLGRSSENV
CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCCCCCCE
ATISPFSDRDAAWDIGRDLVREEDATVFANAYVPASKDPMWSEGARGILRAIVLALIVEY
EEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
RVACARAEALGVEKPKPWHWGHLSFRIMSAMKDIYAWAAEHDPGTAQLIADYEKSNTVKS
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHCCCCEEH
FEVTFRTFCQDIHKLGKAWGEPAEGQPKRRRVSLRLFVDRVERKGRKGVHQIVLRNNLEY
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCH
KSLTKGYLLAMHAFLTAKMLSLNDNPTDGTGRTLLFMEDEFTSQGKKESIFDALELGRSK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCHHCCCCHHHHHHHHHHHCCC
GMVHVIAVQTEDALIELYGQEGRGRISGNTTIKILGRAAAPEMGAQMAANFPKRTVQVTH
CEEEEEEEECCCEEEEEECCCCCCEECCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEC
PGRPAAKGQPETPTTYESVEVPVIRPEVLSSTRDMGKQRASWLGRRPAGIKAVVRIGADL
CCCCCCCCCCCCCCCCCCEECCEECHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
YHLLWPFIEKDKMPSASDASTPPLAAWLVGGKVPALSDYKPMVQVEKLKLDRDAAAAAAA
HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
TAEIPPATTSTAPGGVDLDAMLEGSLAAQGERGPELTGPSDPGSTTTPADRLLSAMELYE
HCCCCCCCCCCCCCCCCHHHHHCCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
LEMQRKKETVVETVEVDVELDSEEYQHAVVDAANLQREQERRGDWHDPGEMDESASLLLE
HHHHHHHHHHHEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
AVAGQVAEAVIPGGHLVLEGLKLAEGAQGPAKNVENVIDNQTGEVRTVTVVAPKKQITTV
HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEEEEECHHHHHHH
RQVSVRTQAPENEPERSI
HHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA