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The map label for this gene is fecI [H]

Identifier: 339717973

GI number: 339717973

Start: 1350348

End: 1350899

Strand: Direct

Name: fecI [H]

Synonym: NA

Alternate gene names: 339717973

Gene position: 1350348-1350899 (Clockwise)

Preceding gene: 238024457

Following gene: 339717974

Centisome position: 47.76

GC content: 65.58

Gene sequence:

>552_bases
ATGAGCACTGGCCCGACAGTACAGCCGATCGAGACCATGGAAAGGCGCGACGAGGACTCGGCCCGCTCCCGCTCGGCCTG
GCTTGCCAACGAGTTCCGGGTCAGCTACGGATGGCTGAAGGCGAAGCTGCAGCGGCGTGTCGGCTCGCCGGCCGATGCCG
AGGATCTCGCCGCGTCGTCGTTCGAGGCGCTGGCCGGCGTGGACGATCCGCCGGGCATTCGCGAACCGCGGGCATGGCTG
ACCGTGATCGCCCAGCGCCTGACCTTCGAGATGTGGCGCCGCCGGGATCTGGAGCGCGCCTATCAGAACGCGCTCCTCAA
CGCCGAGGCGCCGCTCGCGCCGTCCGCCGAATCGATCGTCGAGATTTCCCAGGCCCTGTTCCTGATCGATCAGGCGCTCG
ATGGCTTGCCGCCGAAGGCGAAAAGTGCTTTTATCTACAGCCAGATCGACGGCCTCACGTATGCCGAGATCGCGGAGCGG
CTCGGCGTGTCGAGCAGCATGGTCCGCAAATACATCACCCAAGCGCTCACCCAATGCTTTCTGAACCCTTGA

Upstream 100 bases:
NA

Downstream 100 bases:
NA

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:
NA

Sequences:

>Translated_183_residues
MSTGPTVQPIETMERRDEDSARSRSAWLANEFRVSYGWLKAKLQRRVGSPADAEDLAASSFEALAGVDDPPGIREPRAWL
TVIAQRLTFEMWRRRDLERAYQNALLNAEAPLAPSAESIVEISQALFLIDQALDGLPPKAKSAFIYSQIDGLTYAEIAER
LGVSSSMVRKYITQALTQCFLNP
>Mature_182_residues
STGPTVQPIETMERRDEDSARSRSAWLANEFRVSYGWLKAKLQRRVGSPADAEDLAASSFEALAGVDDPPGIREPRAWLT
VIAQRLTFEMWRRRDLERAYQNALLNAEAPLAPSAESIVEISQALFLIDQALDGLPPKAKSAFIYSQIDGLTYAEIAERL
GVSSSMVRKYITQALTQCFLNP

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates the fec genes for iron dicitrate transport (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790746, Length=150, Percent_Identity=41.3333333333333, Blast_Score=118, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 20376; Mature: 20245

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTGPTVQPIETMERRDEDSARSRSAWLANEFRVSYGWLKAKLQRRVGSPADAEDLAASS
CCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FEALAGVDDPPGIREPRAWLTVIAQRLTFEMWRRRDLERAYQNALLNAEAPLAPSAESIV
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
EISQALFLIDQALDGLPPKAKSAFIYSQIDGLTYAEIAERLGVSSSMVRKYITQALTQCF
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
LNP
CCC
>Mature Secondary Structure 
STGPTVQPIETMERRDEDSARSRSAWLANEFRVSYGWLKAKLQRRVGSPADAEDLAASS
CCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
FEALAGVDDPPGIREPRAWLTVIAQRLTFEMWRRRDLERAYQNALLNAEAPLAPSAESIV
HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
EISQALFLIDQALDGLPPKAKSAFIYSQIDGLTYAEIAERLGVSSSMVRKYITQALTQCF
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
LNP
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2254251; 7610040; 9278503; 8052622 [H]