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The map label for this gene is ureD

Identifier: 33864497

GI number: 33864497

Start: 2359465

End: 2360424

Strand: Direct

Name: ureD

Synonym: PMT2233

Alternate gene names: 33864497

Gene position: 2359465-2360424 (Clockwise)

Preceding gene: 33864488

Following gene: 33864498

Centisome position: 97.87

GC content: 56.04

Gene sequence:

>960_bases
ATGACTGGCGATAGACCCTGGCACGGCCAATGTTCCTTGCAACTGATCAGCAAAACTGCGACAGACGATCTTCAATCCCA
GCTCACCGTGCATCAGAGCCAATGCACGGCTCCATTCAAGATTCAGCGTGCCAATCTTGATCACGACGGCCGCTGTCAAC
TGCCCTTACTTCACACCGCAGGGGGTTTGGTCGGAGGAGATCAGCTCAGTGTGAATGTCAAAGCTGGAGCAGACAGCCGC
GGCCTGGTCACGAGTGTGGCTGCCCAGAAGGTCTATGGCTCCGTAGGCCGCTCCAAACAACACCCCAAAGGCCGCTGGGC
AAGTCAAGAGTGTCACTTCGAACTAGAAACCAATGCTGATCTGGAATGGTTACCCCAAGAGCTCGTGGTTTTTCAAGGAG
GCCTCTACAAGCAACGGATGCAAGTCGAACTGCAACCAAAAGCCAGTTTTCTCTGCGCCGAAGTGGTGCGCCTAGGTCGC
ACAGCTGCTGGAGAAACACTGAACGAAGGCGCCTGGAGGTCAAGCCTGGAGATCTGCCGACAAACCCCGATTGGTCGTCA
ATGGGAACTAGTCGATCAACTCGAGCTCAACAGCGAAGTGCTGCAGAGTTTGCACGGCATGGGGACACAGCCCGTGTTCG
GATCTTTTGTTTGGGCCGCACCGCATCCTCTGACTGCCGACGTGATGGAGATACTTCTGCGGAACTGTCGAACAGATCGC
GCAAACCTAGAAGGGTCCATGGCTTGTGGTGGTCTCGATCAAGGCTTAGTGGCCCGATATATAGGGCCATCAAGCCAAGC
CGCGCGCCAATGGTTTTCCCGCCTCTGGGCCCGCACACGCCAGCTACGGCGGCTAAGCACTCCTCAACCTCCACGAGAAT
GGCCCCTGCAAGAAGAGGGAACGTTCTCAAACGAAAGGTTCACAAAGGACCATCAATCGCCTTCTGCCTCGCCACACTGA

Upstream 100 bases:

>100_bases
AAATCGACCAAGCTCATGACCATAAGCCTGCCAAACGGCAACTGCTCCATCCGTGAGTATTGCTAAAGAGTTAAACCGTG
CTCGATCACAGCGTGCTCCG

Downstream 100 bases:

>100_bases
AATGAAATCCTGGCTTCCATGCACCTCAGCCCCCAGGAAAAAGACAAACTCCTGATCGTCACCGCTGCCCTGCTTGCAGA
ACGACGCCTCAACCGCGGCC

Product: urease accessory protein UreD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MTGDRPWHGQCSLQLISKTATDDLQSQLTVHQSQCTAPFKIQRANLDHDGRCQLPLLHTAGGLVGGDQLSVNVKAGADSR
GLVTSVAAQKVYGSVGRSKQHPKGRWASQECHFELETNADLEWLPQELVVFQGGLYKQRMQVELQPKASFLCAEVVRLGR
TAAGETLNEGAWRSSLEICRQTPIGRQWELVDQLELNSEVLQSLHGMGTQPVFGSFVWAAPHPLTADVMEILLRNCRTDR
ANLEGSMACGGLDQGLVARYIGPSSQAARQWFSRLWARTRQLRRLSTPQPPREWPLQEEGTFSNERFTKDHQSPSASPH

Sequences:

>Translated_319_residues
MTGDRPWHGQCSLQLISKTATDDLQSQLTVHQSQCTAPFKIQRANLDHDGRCQLPLLHTAGGLVGGDQLSVNVKAGADSR
GLVTSVAAQKVYGSVGRSKQHPKGRWASQECHFELETNADLEWLPQELVVFQGGLYKQRMQVELQPKASFLCAEVVRLGR
TAAGETLNEGAWRSSLEICRQTPIGRQWELVDQLELNSEVLQSLHGMGTQPVFGSFVWAAPHPLTADVMEILLRNCRTDR
ANLEGSMACGGLDQGLVARYIGPSSQAARQWFSRLWARTRQLRRLSTPQPPREWPLQEEGTFSNERFTKDHQSPSASPH
>Mature_318_residues
TGDRPWHGQCSLQLISKTATDDLQSQLTVHQSQCTAPFKIQRANLDHDGRCQLPLLHTAGGLVGGDQLSVNVKAGADSRG
LVTSVAAQKVYGSVGRSKQHPKGRWASQECHFELETNADLEWLPQELVVFQGGLYKQRMQVELQPKASFLCAEVVRLGRT
AAGETLNEGAWRSSLEICRQTPIGRQWELVDQLELNSEVLQSLHGMGTQPVFGSFVWAAPHPLTADVMEILLRNCRTDRA
NLEGSMACGGLDQGLVARYIGPSSQAARQWFSRLWARTRQLRRLSTPQPPREWPLQEEGTFSNERFTKDHQSPSASPH

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_PROMM (Q7V3V5)

Other databases:

- EMBL:   BX548175
- RefSeq:   NP_896057.1
- STRING:   Q7V3V5
- GeneID:   1728605
- GenomeReviews:   BX548175_GR
- KEGG:   pmt:PMT2233
- NMPDR:   fig|74547.1.peg.2224
- eggNOG:   COG0829
- HOGENOM:   HBG711156
- OMA:   CLGRPVM
- ProtClustDB:   CLSK922040
- BioCyc:   PMAR74547:PMT2233-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 35442; Mature: 35311

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGDRPWHGQCSLQLISKTATDDLQSQLTVHQSQCTAPFKIQRANLDHDGRCQLPLLHTA
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEHHCC
GGLVGGDQLSVNVKAGADSRGLVTSVAAQKVYGSVGRSKQHPKGRWASQECHFELETNAD
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
LEWLPQELVVFQGGLYKQRMQVELQPKASFLCAEVVRLGRTAAGETLNEGAWRSSLEICR
HHHHHHHHHHHCCCCHHHHHEEEECCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHH
QTPIGRQWELVDQLELNSEVLQSLHGMGTQPVFGSFVWAAPHPLTADVMEILLRNCRTDR
CCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHCCEEECCCCCCCHHHHHHHHHHCCCCC
ANLEGSMACGGLDQGLVARYIGPSSQAARQWFSRLWARTRQLRRLSTPQPPREWPLQEEG
CCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
TFSNERFTKDHQSPSASPH
CCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TGDRPWHGQCSLQLISKTATDDLQSQLTVHQSQCTAPFKIQRANLDHDGRCQLPLLHTA
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEHHCC
GGLVGGDQLSVNVKAGADSRGLVTSVAAQKVYGSVGRSKQHPKGRWASQECHFELETNAD
CCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC
LEWLPQELVVFQGGLYKQRMQVELQPKASFLCAEVVRLGRTAAGETLNEGAWRSSLEICR
HHHHHHHHHHHCCCCHHHHHEEEECCHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHH
QTPIGRQWELVDQLELNSEVLQSLHGMGTQPVFGSFVWAAPHPLTADVMEILLRNCRTDR
CCCCCCCHHHHHHHHCCHHHHHHHHCCCCCCHHCCEEECCCCCCCHHHHHHHHHHCCCCC
ANLEGSMACGGLDQGLVARYIGPSSQAARQWFSRLWARTRQLRRLSTPQPPREWPLQEEG
CCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
TFSNERFTKDHQSPSASPH
CCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12917642