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The map label for this gene is yfjD [C]

Identifier: 33864133

GI number: 33864133

Start: 1972777

End: 1974060

Strand: Reverse

Name: yfjD [C]

Synonym: PMT1866

Alternate gene names: 33864133

Gene position: 1974060-1972777 (Counterclockwise)

Preceding gene: 33864134

Following gene: 33864132

Centisome position: 81.88

GC content: 54.21

Gene sequence:

>1284_bases
ATGAGGTTGTTTTTCCTGGCTTTATTGCTGGTTCTACCGGCTTTTTTCGCGGCTGGAGAGGTTGCCTTGTTGCGGCTGCG
GCCTAGTCGAGTACAGGTTTTAGTGGAAGAGCAGCAGCCCGGAGCTTCCGCCGTTCATCGTCTTCAGCGCCGTTTGAGGA
GGGCGTTGATGGTGTCTCAACTGGGTGGAATGCTGGCGTTGGTAGCCCTGGGCTGGGTTGGCCGTGGTGTTGGACATCGC
TGGTGGCCTCTAGCTGATCCTGCTAGTCGCTGGTTGGACGGGGGGCTTTTTCTGCTGCTTGTGGTGTTGGCCACCTTGTT
GGCTGGTTTTCTTCCTAAGGCCTGGGTGCTGAACCGTCCAGAGGCTGCAGCTCTAAACCTCGCTCCATTGTTGGAGATGG
TGATGCGTGTGCTTGCTCCCCTTTTGGCTCTTCTGGAAGCTGTCGCTTCGATGATGTTGCGGCTGGTTGGTTTGAATGCA
CATTGGGATTCTCTTGTTCCTGCTCTCTCTGCTGGTGAGCTGGAGTCTCTGATCGAAATTGGTGGTGTAACAGGCCTTCG
TCCTGATGAGCGCAACATCCTTGAAGGTGTTTTCGCCTTGCGCGACACTCAAGTTAGAGAGGTGATGGTGCCACGTTCTG
GCATGGTCACCTTGCCTGTTGGGGTCTGCTTCGCTGAACTGATGAGAGTGGTGCATAGCACCCGCCATGCGCGCTTTCCA
GTGATCGGTCAGTCCCTAGATGATGTCAGGGGTGTGCTTGATTTACGTCGGTTGGCGGAACCCATCTCCCGGGGTGCTTT
GCAGGCAGAATCTCCGCTTGAACCTTTTTTAGAACCAGCTGTAAGGGTTCTTGAGACCAGCACTTTGGCTGAATTGTTGC
CGATGATCCGAAGTGGACAGCCTCTACTGCTTGTCGTTGATGAGCATGGCGGTACCGAAGGATTGGTTACAGCTGCCGAT
CTCACTGGTGAGATCGTGGGCGATGAGCCCCATGCAGACGACGATGAGCCTGATCTTGAGCTGATTGAGGGTCAGTCAGA
CACATGGATGGTTGCAGGAGATCTTGAGATCATTGAGCTCAATCGACAGCTCAATCTGGACTTGCCTGAAGCTGATGGAC
ATCACACCTTGGCTGGCTTTCTGCTTGAAAAGTTGCAACACATCCCTTCTGCTGGAGAGGCCTTGCGCTGCGATGGTTTG
CAATTCGAGATCGTCACGATGAAGGGTCCTCGTATCGAGCGTGTGCGACTGATTCTTCCCAGTCACGATCACACTGAGGA
ATGA

Upstream 100 bases:

>100_bases
ATCCGTGATTGAGGGGGTCTAGCAATCTGGTGAATGCAGCGAACTCATAATTCGCCTAAGGCGAGTTCGATCCTCGCGAC
CCCCATATTTTCTTCATTCA

Downstream 100 bases:

>100_bases
TCGTTGATAATTTCCCCGATGCGCCATGGCCTGCCGATGACCGATCCCATGGTTCCGGTGAAGGTCGGTGTGATCGGGAT
TGGCAATATGGGTTGGCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 427; Mature: 427

Protein sequence:

>427_residues
MRLFFLALLLVLPAFFAAGEVALLRLRPSRVQVLVEEQQPGASAVHRLQRRLRRALMVSQLGGMLALVALGWVGRGVGHR
WWPLADPASRWLDGGLFLLLVVLATLLAGFLPKAWVLNRPEAAALNLAPLLEMVMRVLAPLLALLEAVASMMLRLVGLNA
HWDSLVPALSAGELESLIEIGGVTGLRPDERNILEGVFALRDTQVREVMVPRSGMVTLPVGVCFAELMRVVHSTRHARFP
VIGQSLDDVRGVLDLRRLAEPISRGALQAESPLEPFLEPAVRVLETSTLAELLPMIRSGQPLLLVVDEHGGTEGLVTAAD
LTGEIVGDEPHADDDEPDLELIEGQSDTWMVAGDLEIIELNRQLNLDLPEADGHHTLAGFLLEKLQHIPSAGEALRCDGL
QFEIVTMKGPRIERVRLILPSHDHTEE

Sequences:

>Translated_427_residues
MRLFFLALLLVLPAFFAAGEVALLRLRPSRVQVLVEEQQPGASAVHRLQRRLRRALMVSQLGGMLALVALGWVGRGVGHR
WWPLADPASRWLDGGLFLLLVVLATLLAGFLPKAWVLNRPEAAALNLAPLLEMVMRVLAPLLALLEAVASMMLRLVGLNA
HWDSLVPALSAGELESLIEIGGVTGLRPDERNILEGVFALRDTQVREVMVPRSGMVTLPVGVCFAELMRVVHSTRHARFP
VIGQSLDDVRGVLDLRRLAEPISRGALQAESPLEPFLEPAVRVLETSTLAELLPMIRSGQPLLLVVDEHGGTEGLVTAAD
LTGEIVGDEPHADDDEPDLELIEGQSDTWMVAGDLEIIELNRQLNLDLPEADGHHTLAGFLLEKLQHIPSAGEALRCDGL
QFEIVTMKGPRIERVRLILPSHDHTEE
>Mature_427_residues
MRLFFLALLLVLPAFFAAGEVALLRLRPSRVQVLVEEQQPGASAVHRLQRRLRRALMVSQLGGMLALVALGWVGRGVGHR
WWPLADPASRWLDGGLFLLLVVLATLLAGFLPKAWVLNRPEAAALNLAPLLEMVMRVLAPLLALLEAVASMMLRLVGLNA
HWDSLVPALSAGELESLIEIGGVTGLRPDERNILEGVFALRDTQVREVMVPRSGMVTLPVGVCFAELMRVVHSTRHARFP
VIGQSLDDVRGVLDLRRLAEPISRGALQAESPLEPFLEPAVRVLETSTLAELLPMIRSGQPLLLVVDEHGGTEGLVTAAD
LTGEIVGDEPHADDDEPDLELIEGQSDTWMVAGDLEIIELNRQLNLDLPEADGHHTLAGFLLEKLQHIPSAGEALRCDGL
QFEIVTMKGPRIERVRLILPSHDHTEE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=389, Percent_Identity=24.6786632390745, Blast_Score=133, Evalue=3e-31,
Organism=Escherichia coli, GI145693175, Length=411, Percent_Identity=27.007299270073, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI1790664, Length=423, Percent_Identity=24.113475177305, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1786879, Length=251, Percent_Identity=32.2709163346614, Blast_Score=108, Evalue=8e-25,
Organism=Escherichia coli, GI87082033, Length=343, Percent_Identity=25.0728862973761, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1788119, Length=242, Percent_Identity=27.6859504132231, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46719; Mature: 46719

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFFLALLLVLPAFFAAGEVALLRLRPSRVQVLVEEQQPGASAVHRLQRRLRRALMVSQ
CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH
LGGMLALVALGWVGRGVGHRWWPLADPASRWLDGGLFLLLVVLATLLAGFLPKAWVLNRP
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCC
EAAALNLAPLLEMVMRVLAPLLALLEAVASMMLRLVGLNAHWDSLVPALSAGELESLIEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHH
GGVTGLRPDERNILEGVFALRDTQVREVMVPRSGMVTLPVGVCFAELMRVVHSTRHARFP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCC
VIGQSLDDVRGVLDLRRLAEPISRGALQAESPLEPFLEPAVRVLETSTLAELLPMIRSGQ
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PLLLVVDEHGGTEGLVTAADLTGEIVGDEPHADDDEPDLELIEGQSDTWMVAGDLEIIEL
CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCEEEEEE
NRQLNLDLPEADGHHTLAGFLLEKLQHIPSAGEALRCDGLQFEIVTMKGPRIERVRLILP
CCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEEECCCCEEEEEEEEC
SHDHTEE
CCCCCCC
>Mature Secondary Structure
MRLFFLALLLVLPAFFAAGEVALLRLRPSRVQVLVEEQQPGASAVHRLQRRLRRALMVSQ
CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHH
LGGMLALVALGWVGRGVGHRWWPLADPASRWLDGGLFLLLVVLATLLAGFLPKAWVLNRP
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCC
EAAALNLAPLLEMVMRVLAPLLALLEAVASMMLRLVGLNAHWDSLVPALSAGELESLIEI
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHH
GGVTGLRPDERNILEGVFALRDTQVREVMVPRSGMVTLPVGVCFAELMRVVHSTRHARFP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCCC
VIGQSLDDVRGVLDLRRLAEPISRGALQAESPLEPFLEPAVRVLETSTLAELLPMIRSGQ
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PLLLVVDEHGGTEGLVTAADLTGEIVGDEPHADDDEPDLELIEGQSDTWMVAGDLEIIEL
CEEEEEECCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCEEEEEE
NRQLNLDLPEADGHHTLAGFLLEKLQHIPSAGEALRCDGLQFEIVTMKGPRIERVRLILP
CCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCEEEEEEEECCCCEEEEEEEEC
SHDHTEE
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]