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The map label for this gene is yrdC [C]

Identifier: 33863926

GI number: 33863926

Start: 1765296

End: 1765886

Strand: Reverse

Name: yrdC [C]

Synonym: PMT1659

Alternate gene names: 33863926

Gene position: 1765886-1765296 (Counterclockwise)

Preceding gene: 33863927

Following gene: 33863923

Centisome position: 73.25

GC content: 57.7

Gene sequence:

>591_bases
ATGGCAGTTCTGCCCTCGGCTGTTCTTGACGCCAGTGCCTTGGCATCCAGATTGCATGCTGGTTCAGCGGCATTGTTGCC
CACAGACACCTTGCCAGCTTTGGCGGCCGCTCCTGTTCACGCTGCACAGTTGTGGACCATCAAGCAGAGGTCGGCCGACA
AACCTCTGATCCTGATGGGAGCGACTCCTGAAGAGTTACTTGCGCATGTTTTGCCGCTTGCTTTGGAGGATGTCTGGTCG
ATGGCCAGGCGCTATTGGCCAGGGGCCCTCACCTTGGTTGTACCGGCTTCGGGTGTGCTTGTTGAGGCTCTTAATCCTGG
AGCTTTCACGCTTGGGTTGCGAGTACCGGATTGTGGAATGCTGAGGACCTTGCTGAAGCAGAGCGGGCCACTAGCTACCA
CGAGCGCGAATTTGTCTGGATCTGCACCCACTTTCTCGGCAGATGCTGCTCATACTTGTTTCCCAGGATTGCCATTGTTG
GGGCCATTGCCATGGCCGACGCCTTCTGGTTTGGCCAGCACGGTGGTGGCTTGGCAAGGGGCCGGGCGTTGGCATGAGTT
ACGACGTGGTGCAGTGGTGCTTGAGCTTTGA

Upstream 100 bases:

>100_bases
CGTCAGCAGGGTTTGGAGAATGTGGACTACAAGTCAGATTTACTGGGGGTAAGGCGCTTTGCCATTGCTCGGCATCCTGA
TTATCAAGACTCTTTGAACC

Downstream 100 bases:

>100_bases
ATGAGTCTTCTGATCAAGAGAGCCTGACGATTCAAATGGTCGAACCGAACTTGTTAAGAGGTGCATTGCAGAGACCACTT
GAGTGATCTCTGAAACTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: SUA5/YciO/YrdC Domain Protein; SUA5/YciO/YrdC Domain-Containing Protein; YrdC Domain-Containing Protein; Sua5/YciO/YrdC/YwlC Family Protein; SUA5/YciO/YrdC-Like

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MAVLPSAVLDASALASRLHAGSAALLPTDTLPALAAAPVHAAQLWTIKQRSADKPLILMGATPEELLAHVLPLALEDVWS
MARRYWPGALTLVVPASGVLVEALNPGAFTLGLRVPDCGMLRTLLKQSGPLATTSANLSGSAPTFSADAAHTCFPGLPLL
GPLPWPTPSGLASTVVAWQGAGRWHELRRGAVVLEL

Sequences:

>Translated_196_residues
MAVLPSAVLDASALASRLHAGSAALLPTDTLPALAAAPVHAAQLWTIKQRSADKPLILMGATPEELLAHVLPLALEDVWS
MARRYWPGALTLVVPASGVLVEALNPGAFTLGLRVPDCGMLRTLLKQSGPLATTSANLSGSAPTFSADAAHTCFPGLPLL
GPLPWPTPSGLASTVVAWQGAGRWHELRRGAVVLEL
>Mature_195_residues
AVLPSAVLDASALASRLHAGSAALLPTDTLPALAAAPVHAAQLWTIKQRSADKPLILMGATPEELLAHVLPLALEDVWSM
ARRYWPGALTLVVPASGVLVEALNPGAFTLGLRVPDCGMLRTLLKQSGPLATTSANLSGSAPTFSADAAHTCFPGLPLLG
PLPWPTPSGLASTVVAWQGAGRWHELRRGAVVLEL

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17537239, Length=174, Percent_Identity=32.7586206896552, Blast_Score=70, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20308; Mature: 20177

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVLPSAVLDASALASRLHAGSAALLPTDTLPALAAAPVHAAQLWTIKQRSADKPLILMG
CCCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCHHHHEEEEHHCCCCCCEEEEC
ATPEELLAHVLPLALEDVWSMARRYWPGALTLVVPASGVLVEALNPGAFTLGLRVPDCGM
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCEEEEEEECCCHHH
LRTLLKQSGPLATTSANLSGSAPTFSADAAHTCFPGLPLLGPLPWPTPSGLASTVVAWQG
HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
AGRWHELRRGAVVLEL
CCHHHHHHCCEEEEEC
>Mature Secondary Structure 
AVLPSAVLDASALASRLHAGSAALLPTDTLPALAAAPVHAAQLWTIKQRSADKPLILMG
CCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHCCCHHHHEEEEHHCCCCCCEEEEC
ATPEELLAHVLPLALEDVWSMARRYWPGALTLVVPASGVLVEALNPGAFTLGLRVPDCGM
CCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEECCCCEEEEEEECCCHHH
LRTLLKQSGPLATTSANLSGSAPTFSADAAHTCFPGLPLLGPLPWPTPSGLASTVVAWQG
HHHHHHCCCCCEEECCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHCC
AGRWHELRRGAVVLEL
CCHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA