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The map label for this gene is yrvN [H]

Identifier: 33863885

GI number: 33863885

Start: 1719617

End: 1721824

Strand: Direct

Name: yrvN [H]

Synonym: PMT1618

Alternate gene names: 33863885

Gene position: 1719617-1721824 (Clockwise)

Preceding gene: 33863881

Following gene: 33863889

Centisome position: 71.33

GC content: 56.48

Gene sequence:

>2208_bases
TTGGATCAAAATCTGTTCACATATCAGGGAGATCAGGAGCTAAAGCGCCATGCACCACTAGCTGATCGCCTGCGCCCTAG
AACCCTGGAGGAATTTGTTGGCCAGGGTTCGATCCTGGCGGAAGGACGTCTCCTACGCCGAGCCATTGCTGCCGATCGTG
TAGGCAACTTGCTGCTACATGGTCCTCCAGGTGTTGGTAAAACCACCCTGGCCAGGATTATCGCTGGCCACACCCGTGCC
AACTTCAGCAGCCTCAATGCTGTTCTGGCAGGGGTTAAAGAACTTCGCCAAGAAGTAGATGCAGCCAAGCAGCGACTAGA
GCGACATGGCTTACGCACCATTCTGTTCATCGACGAAGTACACCGCTTTAACAGTGCCCAACAAGATGCCCTGCTGCCCT
GGGTAGAGAACGGCACCGTGACACTGATCGGTGCCACCACGGAAAACCCCTATTTCGAAGTCAACAAAGCGCTGGTAAGC
CGCTCCCGGCTGTTCCGACTACAGGCCCTCGAGAATGCAGATCTTCATCGCCTCCTGAAACACGCTCTTCAAGATTGCGA
GCGGGGCTATGGCGATCGTCAGGTGATGCTCAGCACAGCAGCTGCAAACCATCTCGTCAATGTCGCCAACGGCGATGCTC
GCAGTCTGCTCAATGCTCTCGAACTCGCTGTGGAGAGCAGCCGTCCCAATGAACAGGGCTCAATCCATATCAACCTTGCC
ATCGCTGAAGAATCAATTCAGGAGCGGGCAGTTCTCTACGACAAGCATGGGGATGCCCATTTCGACACCATTAGTGCCTT
CATCAAATCCCTACGAGGCTCAGATGCCGATGCAGCTCTGTTCTGGCTAGCGCGCATGGTGGAGGCTGGTGAAAACCCAC
GCTTCATCTTCAGACGCATGCTCATTGCCGCTGGAGAGGACATTGGCCTCGCTGATCCCCAGGCGATCGTGGTTGTAGAA
GCCTGTGCTGCAGCCTTCGAGCGAATCGGCCTACCGGAGGGTCTCTACCCCCTGGCACAAGCCACCCTTTACTTGGCCTG
CGCCGAAAAAAGCAACAGTGTGCTGGGTTTCTTCGAAGCCCTACGCACGGTGCGGGAGGCCCAGCATCAAGACGTCCCCA
GCCATCTCCGCGATTCCCATCGTGACGGAGCAGCATTTGGAGATGGTGTCGGCTACCGCTACCCCCATGCTTTTGCGGAA
CACTGGGTTTCACAGCAATACCTACCCACCTCCCTGCAAGGAGAAGTCTTCTGGCAACCGAGCCAAACAGGCTGGGAAGG
GCACCGGCGCCTGCTCATGCTGGAACGAAGGGCAGCACAGCTCGCCGCAGCAAGCGAATCAGCTCAGGAGAACCCATTGC
TCGTTAGCAGTGGTCCAGAAACCCCTGAACTAGAGAGATGGGTGCAACGCCAGCTCCGCCAAGATGGAGAACGCCTAAAC
CACCTGCGCGAACGCCTCTGGTCTGGAGTGACTTGCCAACGCCACCATCGAGTTCTGATGATCGGCGGACGCTCCTTGCT
CTGGGCACTCGATCCGCTTCAAGCAGTGCCTGAAGGCGGTGTCACAATCCTCTGCGCAACAGCGCAGGATCAGGCGCGCC
TAATAGCTCAGCTCGATCTGCTCGACCCAATCATCCGCCCTGAACTGATCGATGGAGGCAGCGATGCACTCCAAGACTTA
CCAGCAGAACATCAGTTCGAATGGATTGGGGGACGTCTCTCCAGCCAAGACATTGCAGGAACAGAACAGAAGAAACTTTG
GAGTCTGATCAGCCAGCGATGCACCAATGAAACCGGTCTAAGGCTCCTGATCAGCCATGCAGACATCGGGCCGGCCGAGG
CCCTAATGCAATTACTAGAGAGCAAAGGAGCCAATCCCGCGGAGAGAAACCTGCTAGCACCACTCATCACTCGCGAAAAG
ATCTGGCTTGAAAGCCAGCGCCTCGATTCCCTCCTTGCACAAAACCTTAAGGAGTGCGGCTGGCAGCTGACCTGGGAGAG
ATGGGAGGAACTCCTGACATTGCAGGTGGATGAGGGCCTTGAGCATCGCTGGCTCAGCGAAGGGCGACCCTACCGAGACC
TAGTAGCGACCAATGCATCGTTAGAGGTTCTGGAAAACCTAAAGCTCATACTCAAGCGCACGCGAGGACAACAACTACCC
CAACGCCTGATCCATCAACGCATCATCGGCAGCCGCAGACTCCACTAA

Upstream 100 bases:

>100_bases
GCACTAACGACTTGTTCAACAGCCTGATTATGGAAAGTTTCCAGCTCACAACAACAAGTCACCCCCTAGCGCAAGAATTG
TCTACCAGTGCCAGAGCTCA

Downstream 100 bases:

>100_bases
CACTGCCAAGCCATCGGGAAGACCAACAGCAATAAAAAAAGCCCCGGCGATGCCAGGGCTTGAGAGTTGTGATCAAAAAC
GGATCACCAAAGACCACGAA

Product: recombination factor protein RarA/unknown domain fusion protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 735; Mature: 735

Protein sequence:

>735_residues
MDQNLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLHGPPGVGKTTLARIIAGHTRA
NFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVS
RSRLFRLQALENADLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRMLIAAGEDIGLADPQAIVVVE
ACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEALRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAE
HWVSQQYLPTSLQGEVFWQPSQTGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLRQDGERLN
HLRERLWSGVTCQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDLLDPIIRPELIDGGSDALQDL
PAEHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTNETGLRLLISHADIGPAEALMQLLESKGANPAERNLLAPLITREK
IWLESQRLDSLLAQNLKECGWQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLILKRTRGQQLP
QRLIHQRIIGSRRLH

Sequences:

>Translated_735_residues
MDQNLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLHGPPGVGKTTLARIIAGHTRA
NFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVS
RSRLFRLQALENADLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRMLIAAGEDIGLADPQAIVVVE
ACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEALRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAE
HWVSQQYLPTSLQGEVFWQPSQTGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLRQDGERLN
HLRERLWSGVTCQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDLLDPIIRPELIDGGSDALQDL
PAEHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTNETGLRLLISHADIGPAEALMQLLESKGANPAERNLLAPLITREK
IWLESQRLDSLLAQNLKECGWQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLILKRTRGQQLP
QRLIHQRIIGSRRLH
>Mature_735_residues
MDQNLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLHGPPGVGKTTLARIIAGHTRA
NFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEVHRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVS
RSRLFRLQALENADLHRLLKHALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRMLIAAGEDIGLADPQAIVVVE
ACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEALRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAE
HWVSQQYLPTSLQGEVFWQPSQTGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLRQDGERLN
HLRERLWSGVTCQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDLLDPIIRPELIDGGSDALQDL
PAEHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTNETGLRLLISHADIGPAEALMQLLESKGANPAERNLLAPLITREK
IWLESQRLDSLLAQNLKECGWQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLILKRTRGQQLP
QRLIHQRIIGSRRLH

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=438, Percent_Identity=38.1278538812785, Blast_Score=272, Evalue=7e-73,
Organism=Homo sapiens, GI18426904, Length=438, Percent_Identity=34.0182648401827, Blast_Score=220, Evalue=3e-57,
Organism=Escherichia coli, GI1787119, Length=412, Percent_Identity=43.4466019417476, Blast_Score=335, Evalue=7e-93,
Organism=Escherichia coli, GI1788167, Length=121, Percent_Identity=36.3636363636364, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=421, Percent_Identity=36.5795724465558, Blast_Score=252, Evalue=2e-67,
Organism=Saccharomyces cerevisiae, GI6324039, Length=283, Percent_Identity=26.8551236749117, Blast_Score=79, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 82328; Mature: 82328

Theoretical pI: Translated: 6.55; Mature: 6.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDQNLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLH
CCCCCEEECCHHHHHHCCCHHHHCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCEEEE
GPPGVGKTTLARIIAGHTRANFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEV
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
HRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLQALENADLHRLLK
HHHCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
HHHHHHHCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRM
EEHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
LIAAGEDIGLADPQAIVVVEACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHH
LRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAEHWVSQQYLPTSLQGEVFWQP
HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECC
SQTGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLRQDGERLN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
HLRERLWSGVTCQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDL
HHHHHHHCCCCCCCCCEEEEECCCHHHHCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHH
LDPIIRPELIDGGSDALQDLPAEHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTNETGL
HHHHHCCHHCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
RLLISHADIGPAEALMQLLESKGANPAERNLLAPLITREKIWLESQRLDSLLAQNLKECG
EEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLILKRTRGQQLP
CEECHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
QRLIHQRIIGSRRLH
HHHHHHHHHHCCCCC
>Mature Secondary Structure
MDQNLFTYQGDQELKRHAPLADRLRPRTLEEFVGQGSILAEGRLLRRAIAADRVGNLLLH
CCCCCEEECCHHHHHHCCCHHHHCCCHHHHHHCCCCCEEHHHHHHHHHHHHHHHCCEEEE
GPPGVGKTTLARIIAGHTRANFSSLNAVLAGVKELRQEVDAAKQRLERHGLRTILFIDEV
CCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHH
HRFNSAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLQALENADLHRLLK
HHHCCCCCCCCCCEECCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
HALQDCERGYGDRQVMLSTAAANHLVNVANGDARSLLNALELAVESSRPNEQGSIHINLA
HHHHHHHCCCCCHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE
IAEESIQERAVLYDKHGDAHFDTISAFIKSLRGSDADAALFWLARMVEAGENPRFIFRRM
EEHHHHHHHHHHEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHH
LIAAGEDIGLADPQAIVVVEACAAAFERIGLPEGLYPLAQATLYLACAEKSNSVLGFFEA
HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEEECCCCCCHHHHHHH
LRTVREAQHQDVPSHLRDSHRDGAAFGDGVGYRYPHAFAEHWVSQQYLPTSLQGEVFWQP
HHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCEEECC
SQTGWEGHRRLLMLERRAAQLAAASESAQENPLLVSSGPETPELERWVQRQLRQDGERLN
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHH
HLRERLWSGVTCQRHHRVLMIGGRSLLWALDPLQAVPEGGVTILCATAQDQARLIAQLDL
HHHHHHHCCCCCCCCCEEEEECCCHHHHCCCHHHHCCCCCEEEEEECCHHHHHHHHHHHH
LDPIIRPELIDGGSDALQDLPAEHQFEWIGGRLSSQDIAGTEQKKLWSLISQRCTNETGL
HHHHHCCHHCCCCHHHHHHCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
RLLISHADIGPAEALMQLLESKGANPAERNLLAPLITREKIWLESQRLDSLLAQNLKECG
EEEEECCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
WQLTWERWEELLTLQVDEGLEHRWLSEGRPYRDLVATNASLEVLENLKLILKRTRGQQLP
CEECHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCHHHH
QRLIHQRIIGSRRLH
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]