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The map label for this gene is sufC [C]

Identifier: 33863872

GI number: 33863872

Start: 1705027

End: 1705815

Strand: Reverse

Name: sufC [C]

Synonym: PMT1605

Alternate gene names: 33863872

Gene position: 1705815-1705027 (Counterclockwise)

Preceding gene: 33863873

Following gene: 33863871

Centisome position: 70.76

GC content: 49.81

Gene sequence:

>789_bases
GTGATTTCTCTCGATGCTCCAGTACTGATAGAGATACGCGACTTGTCTGCTTGCGTTGATGATCAGCCTATTCTTAATGG
AGTAAATCTCACCATCCGTGCAGGCGAGATTCATGCCTTGATGGGTCGTAATGGTAGCGGTAAAAGCACTTTGTCTAAGG
TCTTGGCAGGGCATCCTGCTTACAAAGTCACCGAGGGCAGTGTTCTTTATCGCGGTGAGGATTTACTCCCTCTTGAGCCA
GATGAGCGCTCTCGAATTGGGCTCTTTCTCGGTTTTCAGTACCCGGTTGAGATTCCTGGAGTGAGTAATCTTGAGTTCCT
GCGGGTATCCACGAATGCCCGTCGCCTAGAACAAGGCATGGAGGAATTGGATACCTTTGCGTTCGAAGACTTTGTGCGTG
AGCGTCTCGGTTTGGTGCAGATGGACCCAGCTTTTCTAGACCGTTCGGTGAATGAGGGCTTCAGTGGTGGAGAGAAGAAG
CGCAATGAGATTTTGCAAATGGCGTTACTAGAACCTCTTGTAGCAATTCTCGATGAGACTGATTCCGGTTTGGATATCGA
TGCTTTGCGCATCGTTGCTGGGGGTGTCAATCAACTCGCAAATGTTGACAATGCCACTCTCTTGATTACTCATTATCAGC
GTCTACTTGATCTCATCCAACCCGACTATGTGCATGTGATGGCCGCGGGGAGGATTGTGCGCTCCGGTGACAAGGCGCTG
GCACTTGAGTTGGAGCAACGAGGTTATGAATGGGTGGATCGTGAATTGGATGCACTGGAGATGACCTGA

Upstream 100 bases:

>100_bases
GCTGAGGCTGATAAGCTATTGGCTCTTAAATTGGAGGGTTCGGTTGGATAATGAATTGCTGCGTTGGCTTACCCTCTCCT
AATTCTTTTCGTTTCTTATA

Downstream 100 bases:

>100_bases
TGGTGGAAGCCCCCATCAAGAACTCCTCAGCTCTCGATGACTGGTGTGAGCGGCTCTTGCACAGTCTTGAAGCCCCATCA
GGTCCGATGGCTGCCTGCCA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MISLDAPVLIEIRDLSACVDDQPILNGVNLTIRAGEIHALMGRNGSGKSTLSKVLAGHPAYKVTEGSVLYRGEDLLPLEP
DERSRIGLFLGFQYPVEIPGVSNLEFLRVSTNARRLEQGMEELDTFAFEDFVRERLGLVQMDPAFLDRSVNEGFSGGEKK
RNEILQMALLEPLVAILDETDSGLDIDALRIVAGGVNQLANVDNATLLITHYQRLLDLIQPDYVHVMAAGRIVRSGDKAL
ALELEQRGYEWVDRELDALEMT

Sequences:

>Translated_262_residues
MISLDAPVLIEIRDLSACVDDQPILNGVNLTIRAGEIHALMGRNGSGKSTLSKVLAGHPAYKVTEGSVLYRGEDLLPLEP
DERSRIGLFLGFQYPVEIPGVSNLEFLRVSTNARRLEQGMEELDTFAFEDFVRERLGLVQMDPAFLDRSVNEGFSGGEKK
RNEILQMALLEPLVAILDETDSGLDIDALRIVAGGVNQLANVDNATLLITHYQRLLDLIQPDYVHVMAAGRIVRSGDKAL
ALELEQRGYEWVDRELDALEMT
>Mature_262_residues
MISLDAPVLIEIRDLSACVDDQPILNGVNLTIRAGEIHALMGRNGSGKSTLSKVLAGHPAYKVTEGSVLYRGEDLLPLEP
DERSRIGLFLGFQYPVEIPGVSNLEFLRVSTNARRLEQGMEELDTFAFEDFVRERLGLVQMDPAFLDRSVNEGFSGGEKK
RNEILQMALLEPLVAILDETDSGLDIDALRIVAGGVNQLANVDNATLLITHYQRLLDLIQPDYVHVMAAGRIVRSGDKAL
ALELEQRGYEWVDRELDALEMT

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI156105685, Length=224, Percent_Identity=32.1428571428571, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1787972, Length=247, Percent_Identity=55.4655870445344, Blast_Score=286, Evalue=1e-78,
Organism=Escherichia coli, GI1789891, Length=224, Percent_Identity=32.1428571428571, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787143, Length=221, Percent_Identity=30.7692307692308, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87081709, Length=229, Percent_Identity=28.3842794759825, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI87081791, Length=230, Percent_Identity=29.5652173913043, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787500, Length=250, Percent_Identity=30.8, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1790525, Length=217, Percent_Identity=30.8755760368664, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787113, Length=237, Percent_Identity=30.379746835443, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=26.7543859649123, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789864, Length=224, Percent_Identity=27.6785714285714, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788761, Length=224, Percent_Identity=27.2321428571429, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=220, Percent_Identity=30.9090909090909, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI212646699, Length=236, Percent_Identity=30.9322033898305, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI193209708, Length=220, Percent_Identity=29.0909090909091, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=221, Percent_Identity=29.8642533936652, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=221, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=221, Percent_Identity=29.4117647058824, Blast_Score=64, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324498, Length=245, Percent_Identity=27.3469387755102, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI161076682, Length=267, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI161076684, Length=267, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581617, Length=267, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581615, Length=267, Percent_Identity=30.3370786516854, Blast_Score=68, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29017; Mature: 29017

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLDAPVLIEIRDLSACVDDQPILNGVNLTIRAGEIHALMGRNGSGKSTLSKVLAGHPA
CCCCCCCEEEEEECHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
YKVTEGSVLYRGEDLLPLEPDERSRIGLFLGFQYPVEIPGVSNLEFLRVSTNARRLEQGM
EEEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCEECCCCCCCEEEEECCCHHHHHHHH
EELDTFAFEDFVRERLGLVQMDPAFLDRSVNEGFSGGEKKRNEILQMALLEPLVAILDET
HHHHHHHHHHHHHHHHCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
DSGLDIDALRIVAGGVNQLANVDNATLLITHYQRLLDLIQPDYVHVMAAGRIVRSGDKAL
CCCCCHHHHHHHHCCHHHHCCCCCCEEHHHHHHHHHHHHCCCCEEEEECCEEEECCCCEE
ALELEQRGYEWVDRELDALEMT
EEEEHHCCCHHHHCCCHHHCCC
>Mature Secondary Structure
MISLDAPVLIEIRDLSACVDDQPILNGVNLTIRAGEIHALMGRNGSGKSTLSKVLAGHPA
CCCCCCCEEEEEECHHHHCCCCCCCCCCEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
YKVTEGSVLYRGEDLLPLEPDERSRIGLFLGFQYPVEIPGVSNLEFLRVSTNARRLEQGM
EEEECCEEEECCCCCCCCCCCCCCEEEEEEEEECCEECCCCCCCEEEEECCCHHHHHHHH
EELDTFAFEDFVRERLGLVQMDPAFLDRSVNEGFSGGEKKRNEILQMALLEPLVAILDET
HHHHHHHHHHHHHHHHCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
DSGLDIDALRIVAGGVNQLANVDNATLLITHYQRLLDLIQPDYVHVMAAGRIVRSGDKAL
CCCCCHHHHHHHHCCHHHHCCCCCCEEHHHHHHHHHHHHCCCCEEEEECCEEEECCCCEE
ALELEQRGYEWVDRELDALEMT
EEEEHHCCCHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]