| Definition | Prochlorococcus marinus str. MIT 9313 chromosome, complete genome. |
|---|---|
| Accession | NC_005071 |
| Length | 2,410,873 |
Click here to switch to the map view.
The map label for this gene is 33863859
Identifier: 33863859
GI number: 33863859
Start: 1693045
End: 1693551
Strand: Direct
Name: 33863859
Synonym: PMT1592
Alternate gene names: NA
Gene position: 1693045-1693551 (Clockwise)
Preceding gene: 33863858
Following gene: 33863860
Centisome position: 70.23
GC content: 56.02
Gene sequence:
>507_bases TTGGGGTGCCTGAGCCTTGGGAGCTGCATCAATTCGATTGAGAGAGCACCAGGTGGCCTGCTTCAACGCAGCCAGCAAGA CCCTGCCCTCAGCGGCAATGGCGAAATGCTGGCAGTGATCGTCGATCAGCGAGGCCGGCCAACCGTTCAGCTCCGCGAGC TTAGAGACGGAAAGATCCTGCCACTACGCCATTTCTCCCGTCACCAACCTCACAGTTCTCCCTCCCTGAGCTGGAATGGA CGTTATCTGGCAGTGATCACACAAAAAGGCAATCGTCGCCTAACGATCATTGAAGATCGTCTAACCGGAAGAATCCACCC GCTTCCCCTACCGGGGGAGAGAGATCCTGTGAGCCTCAGCCTTGCACCAGATGCACGCCAGTTAGCTATGCAAGTAGCCG ATCAGGGGCATTGGCGCGTAGAGCTCTTCGATCTATCACACATCCTTGAGCCTGATCCAATCAGAGGGCTGAAGCGCTCA ACTCCAACGAAAGAGGTTAGACCGTGA
Upstream 100 bases:
>100_bases CAAGACGCTCAGCTCCGCGAAGTTCAAGACCTCGCGACAACAGTTCCCGTTTTGACGACTGAAGCCCATTGCCAACAACC TGCAGCAACTGATCCTGCTT
Downstream 100 bases:
>100_bases AATATGGGCTCTTACGAGATCTGCCGAGTTGGCTTGTAACTTTGTTTATTTGCTTTGGGCTGGTTGCTTGCGGAAGAGAA GCATTGAGGCCACTCCAAGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 168; Mature: 167
Protein sequence:
>168_residues MGCLSLGSCINSIERAPGGLLQRSQQDPALSGNGEMLAVIVDQRGRPTVQLRELRDGKILPLRHFSRHQPHSSPSLSWNG RYLAVITQKGNRRLTIIEDRLTGRIHPLPLPGERDPVSLSLAPDARQLAMQVADQGHWRVELFDLSHILEPDPIRGLKRS TPTKEVRP
Sequences:
>Translated_168_residues MGCLSLGSCINSIERAPGGLLQRSQQDPALSGNGEMLAVIVDQRGRPTVQLRELRDGKILPLRHFSRHQPHSSPSLSWNG RYLAVITQKGNRRLTIIEDRLTGRIHPLPLPGERDPVSLSLAPDARQLAMQVADQGHWRVELFDLSHILEPDPIRGLKRS TPTKEVRP >Mature_167_residues GCLSLGSCINSIERAPGGLLQRSQQDPALSGNGEMLAVIVDQRGRPTVQLRELRDGKILPLRHFSRHQPHSSPSLSWNGR YLAVITQKGNRRLTIIEDRLTGRIHPLPLPGERDPVSLSLAPDARQLAMQVADQGHWRVELFDLSHILEPDPIRGLKRST PTKEVRP
Specific function: Unknown
COG id: COG0823
COG function: function code U; Periplasmic component of the Tol biopolymer transport system
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18735; Mature: 18604
Theoretical pI: Translated: 10.75; Mature: 10.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGCLSLGSCINSIERAPGGLLQRSQQDPALSGNGEMLAVIVDQRGRPTVQLRELRDGKIL CCCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEE PLRHFSRHQPHSSPSLSWNGRYLAVITQKGNRRLTIIEDRLTGRIHPLPLPGERDPVSLS EHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEE LAPDARQLAMQVADQGHWRVELFDLSHILEPDPIRGLKRSTPTKEVRP ECCCHHHHHHHHHCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure GCLSLGSCINSIERAPGGLLQRSQQDPALSGNGEMLAVIVDQRGRPTVQLRELRDGKIL CCCHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCEE PLRHFSRHQPHSSPSLSWNGRYLAVITQKGNRRLTIIEDRLTGRIHPLPLPGERDPVSLS EHHHHHCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCEEEE LAPDARQLAMQVADQGHWRVELFDLSHILEPDPIRGLKRSTPTKEVRP ECCCHHHHHHHHHCCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA