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The map label for this gene is yqxC [H]

Identifier: 33863749

GI number: 33863749

Start: 1565045

End: 1565848

Strand: Reverse

Name: yqxC [H]

Synonym: PMT1482

Alternate gene names: 33863749

Gene position: 1565848-1565045 (Counterclockwise)

Preceding gene: 33863754

Following gene: 33863745

Centisome position: 64.95

GC content: 57.71

Gene sequence:

>804_bases
ATGTCCCACAAACAGCGTCTTGATCTGCAGCTGCTGATGAAGGGCTTGGCGAGTTCTCGCCATCAGGCTCAGCAGTTGAT
CCGCGCCGGCAAGGTGCGAGATGGTAATGGCCAGCTGCTTGATAAGCCTGGTCATGAGGTGTCGCAGGAGCTTGAGCTTC
AGGTGGAGCAGCCACCGAGATTCGTGTCTCGTGGCGGGGAAAAGTTGCTTGGCGCTCTGCGGGAGTTTCCTCTCAATGTT
GAGGGACGAGTGTGCCTGGATGGCGGCATCTCGACAGGAGGTTTCACCGATTGCCTGTTGCAGCATGGTGCCGCTCGGGT
TTATGGAATCGATGTGGGCTATGGCCAGACGGCCTGGAATTTGCGCAACGACTCTCGTGTGGTGCTCAGAGAGCGCACCA
ACCTGCGCACCCTCAGCCCTGATCAGCTCTACGGGGCTGAGGAGCCTTTGCCGAGCCTTGCTGTTGCTGATCTTGCCTTC
ATCTCCTTGCGGCTTGTGCTGCCTGCCATCAAGAAACTACTTAAGCCAGACCACTCGGAGGCAGTGCTGCTGGTGAAGCC
CCAGTTTGAGGTTGGGCGTGAGCGGGTGGGTAAAGGTGGAGTGGTCAGGGATGCCTTGGCCCATGTGGATGCCTTGAAGA
GCGTGATCGATACATCAAGGTCCTTGGGTTGGTGGCCCAAGGGACTTATCGCCTCTCCGATTACTGGGCCGGCGGGTAAT
CATGAATACCTGCTCTGGCTGGGTGACGAGATCCTCGTAGATCTTCCAGTTCTTGAGAGGCTTGTGGCTCAGACGTTGGC
CTAG

Upstream 100 bases:

>100_bases
CGTCCTTGCGGGCGAGTTGCGGTGATCTTCTCGGAAGCTTTCGCTTTTTGCGGTAGTTAAGAGGTTTTTGTTTCGTTTTC
AAGTCTGCTTTTATGACGAA

Downstream 100 bases:

>100_bases
AGGGCCTTGCTGTCACGCTCGCCGGTACGGATACGTACTACGGAATCCACTGGAGAGATGAAAATCTTGCCGTCACCGAT
TTCGCCTGTTTTGGCAGCTT

Product: rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 267; Mature: 266

Protein sequence:

>267_residues
MSHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPRFVSRGGEKLLGALREFPLNV
EGRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWNLRNDSRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAF
ISLRLVLPAIKKLLKPDHSEAVLLVKPQFEVGRERVGKGGVVRDALAHVDALKSVIDTSRSLGWWPKGLIASPITGPAGN
HEYLLWLGDEILVDLPVLERLVAQTLA

Sequences:

>Translated_267_residues
MSHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPRFVSRGGEKLLGALREFPLNV
EGRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWNLRNDSRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAF
ISLRLVLPAIKKLLKPDHSEAVLLVKPQFEVGRERVGKGGVVRDALAHVDALKSVIDTSRSLGWWPKGLIASPITGPAGN
HEYLLWLGDEILVDLPVLERLVAQTLA
>Mature_266_residues
SHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPRFVSRGGEKLLGALREFPLNVE
GRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWNLRNDSRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAFI
SLRLVLPAIKKLLKPDHSEAVLLVKPQFEVGRERVGKGGVVRDALAHVDALKSVIDTSRSLGWWPKGLIASPITGPAGNH
EYLLWLGDEILVDLPVLERLVAQTLA

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29227; Mature: 29096

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPR
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHEEECCCCH
FVSRGGEKLLGALREFPLNVEGRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWN
HHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEC
LRNDSRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAFISLRLVLPAIKKLLKPDHSE
CCCCCEEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AVLLVKPQFEVGRERVGKGGVVRDALAHVDALKSVIDTSRSLGWWPKGLIASPITGPAGN
EEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
HEYLLWLGDEILVDLPVLERLVAQTLA
CEEEEEECCHHEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
SHKQRLDLQLLMKGLASSRHQAQQLIRAGKVRDGNGQLLDKPGHEVSQELELQVEQPPR
CCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHEEECCCCH
FVSRGGEKLLGALREFPLNVEGRVCLDGGISTGGFTDCLLQHGAARVYGIDVGYGQTAWN
HHHCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEC
LRNDSRVVLRERTNLRTLSPDQLYGAEEPLPSLAVADLAFISLRLVLPAIKKLLKPDHSE
CCCCCEEEEEECCCCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
AVLLVKPQFEVGRERVGKGGVVRDALAHVDALKSVIDTSRSLGWWPKGLIASPITGPAGN
EEEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
HEYLLWLGDEILVDLPVLERLVAQTLA
CEEEEEECCHHEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]