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The map label for this gene is ycf44 [H]

Identifier: 33863744

GI number: 33863744

Start: 1561517

End: 1562809

Strand: Direct

Name: ycf44 [H]

Synonym: PMT1477

Alternate gene names: 33863744

Gene position: 1561517-1562809 (Clockwise)

Preceding gene: 33863743

Following gene: 33863746

Centisome position: 64.77

GC content: 56.92

Gene sequence:

>1293_bases
ATGGCCACCTTTAAACGCCTTCTTGCCTGGATCTCCGACCTACGAATAGCCATAGGTTTGCTACTCGTTATCGCACTCGC
AAGTGCCCTAGGTACTGCGATACCCCAAGGAGAACTCCGAGAGAGCTACCTGGAAGGCTATAGCGACAAACCCTGGCTGG
GCTTTGTCAACGGTTCGATGATTCTGCGCCTGCAGTTGGATCACGTTTACACCAGCAGCTGGTTTTTAGCGCTGTTGGCC
TGGCTTGGGCTTGCACTGATCCTCTGCAGCTGGCGAAGACAATGGCCTGCTCTGCAAGCAGCGCTGCAATGGATCGACTA
CCAGGAGCCGCGTCAATTAAGCAAACTGGCCATCGCCGAAACAATCTCAAGCCCACCCAAAAACGAAAGTATCGACAAAC
TGGCAGCCCATCTCCATCAACAGGGATGGCAAGTCCAACAACAGCCTGGCAGGCTTGCCGCGCGGCGCGGGATTATCGGC
CGAGCAGGGCCAATGCTTGTGCATCTGGGCCTAGTGCTGCTGATGCTAGGGGCCGTCTGGGGTTCCTTGGGTGGAAATCG
TTTGGAGCAATTCCTCGCCCCGGGGCGTTCCCTCGACTTGTTAAACCGTGATGGGAACAGCCATCTCAAACTCACCCTGA
CAAACTTTGGAATTGAAAGAGACCCAGCGGGTCGACCTGAACAGTTCCGCTCACAACTAGAGCTGCTTGAGCCTGGTCAA
GACACTGCCAAGCTGCACGAAGTCAGTGTCAATCATCCGCTGCGCTTCCATGGCTTAACTGTCTATCAAGCAGACTGGTC
TCTAGCTGCCATCACACTGCAACTTGGCCGCAGCCCTCAGCTGCAGCTGCCTCTGCGCACTTTCCCAGAGCTTGGTGAAC
AGGTCTGGGGGCTGGTACTACCGACCAATCCTGATGGCAGCGAGCCAGTCCTTCTGAGCCTCACCAGCGAAGCAGGGCCA
GTACAAGTGTTCGATGCCACCGGTGAGCGATTGGCCAGCCTGCGACCAGCAGGTCCAACCGCAGAAGTGAAGGGAATACC
AATCCGCATCGTCGATGTTCTACCCGCCAGCGGCCTGCTTCTCAAGCGCGATCCGGGCGTGCCTCTGGTCTACATCGGTT
TCTTGATCACCCTGGTGGGTGGGGGGCTGAGCATGATTGCCACGCGCCAACTCTGGGCGGTAGGCGACCCTGAAAATGAA
TGCCTACACGTTGGCGGTCTCTGCAACCGCAATCTGACCGGCTTCGCTAATGAGCTGCCCAGCCTGCTTGCAGCAGCAGT
ACCACAGCAATAA

Upstream 100 bases:

>100_bases
CTGGCACTGCGACCATTAGGCCGCTGGATCCCCCCCATGAGCGGAGCCGTTCTACTCACGACGGGCGTTCTCACTCTGTT
GGCCCGCTGGAGCTGAACCT

Downstream 100 bases:

>100_bases
GAATCTATATTTACAATATTGCCAATATTTTTTTAATTCTCTGGCCTTAAATCAACCAGCACAAGGAAAGTCAAATAAAC
CTAAATTAGTATAAACAGTT

Product: c-type cytochrome biogenesis protein Ccs1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MATFKRLLAWISDLRIAIGLLLVIALASALGTAIPQGELRESYLEGYSDKPWLGFVNGSMILRLQLDHVYTSSWFLALLA
WLGLALILCSWRRQWPALQAALQWIDYQEPRQLSKLAIAETISSPPKNESIDKLAAHLHQQGWQVQQQPGRLAARRGIIG
RAGPMLVHLGLVLLMLGAVWGSLGGNRLEQFLAPGRSLDLLNRDGNSHLKLTLTNFGIERDPAGRPEQFRSQLELLEPGQ
DTAKLHEVSVNHPLRFHGLTVYQADWSLAAITLQLGRSPQLQLPLRTFPELGEQVWGLVLPTNPDGSEPVLLSLTSEAGP
VQVFDATGERLASLRPAGPTAEVKGIPIRIVDVLPASGLLLKRDPGVPLVYIGFLITLVGGGLSMIATRQLWAVGDPENE
CLHVGGLCNRNLTGFANELPSLLAAAVPQQ

Sequences:

>Translated_430_residues
MATFKRLLAWISDLRIAIGLLLVIALASALGTAIPQGELRESYLEGYSDKPWLGFVNGSMILRLQLDHVYTSSWFLALLA
WLGLALILCSWRRQWPALQAALQWIDYQEPRQLSKLAIAETISSPPKNESIDKLAAHLHQQGWQVQQQPGRLAARRGIIG
RAGPMLVHLGLVLLMLGAVWGSLGGNRLEQFLAPGRSLDLLNRDGNSHLKLTLTNFGIERDPAGRPEQFRSQLELLEPGQ
DTAKLHEVSVNHPLRFHGLTVYQADWSLAAITLQLGRSPQLQLPLRTFPELGEQVWGLVLPTNPDGSEPVLLSLTSEAGP
VQVFDATGERLASLRPAGPTAEVKGIPIRIVDVLPASGLLLKRDPGVPLVYIGFLITLVGGGLSMIATRQLWAVGDPENE
CLHVGGLCNRNLTGFANELPSLLAAAVPQQ
>Mature_429_residues
ATFKRLLAWISDLRIAIGLLLVIALASALGTAIPQGELRESYLEGYSDKPWLGFVNGSMILRLQLDHVYTSSWFLALLAW
LGLALILCSWRRQWPALQAALQWIDYQEPRQLSKLAIAETISSPPKNESIDKLAAHLHQQGWQVQQQPGRLAARRGIIGR
AGPMLVHLGLVLLMLGAVWGSLGGNRLEQFLAPGRSLDLLNRDGNSHLKLTLTNFGIERDPAGRPEQFRSQLELLEPGQD
TAKLHEVSVNHPLRFHGLTVYQADWSLAAITLQLGRSPQLQLPLRTFPELGEQVWGLVLPTNPDGSEPVLLSLTSEAGPV
QVFDATGERLASLRPAGPTAEVKGIPIRIVDVLPASGLLLKRDPGVPLVYIGFLITLVGGGLSMIATRQLWAVGDPENEC
LHVGGLCNRNLTGFANELPSLLAAAVPQQ

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG1333

COG function: function code O; ResB protein required for cytochrome c biosynthesis

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccs1/ccsB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007816 [H]

Pfam domain/function: PF05140 ResB [H]

EC number: NA

Molecular weight: Translated: 46896; Mature: 46765

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: PS00178 AA_TRNA_LIGASE_I

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATFKRLLAWISDLRIAIGLLLVIALASALGTAIPQGELRESYLEGYSDKPWLGFVNGSM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEECCCE
ILRLQLDHVYTSSWFLALLAWLGLALILCSWRRQWPALQAALQWIDYQEPRQLSKLAIAE
EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH
TISSPPKNESIDKLAAHLHQQGWQVQQQPGRLAARRGIIGRAGPMLVHLGLVLLMLGAVW
HHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
GSLGGNRLEQFLAPGRSLDLLNRDGNSHLKLTLTNFGIERDPAGRPEQFRSQLELLEPGQ
HCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
DTAKLHEVSVNHPLRFHGLTVYQADWSLAAITLQLGRSPQLQLPLRTFPELGEQVWGLVL
CHHHHHEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCEECCHHHHHHHHHHHCEEEE
PTNPDGSEPVLLSLTSEAGPVQVFDATGERLASLRPAGPTAEVKGIPIRIVDVLPASGLL
ECCCCCCCCEEEEEECCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEE
LKRDPGVPLVYIGFLITLVGGGLSMIATRQLWAVGDPENECLHVGGLCNRNLTGFANELP
EECCCCCCHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCEEEECCCCCCCCCHHHHHHH
SLLAAAVPQQ
HHHHHHCCCC
>Mature Secondary Structure 
ATFKRLLAWISDLRIAIGLLLVIALASALGTAIPQGELRESYLEGYSDKPWLGFVNGSM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCEEEECCCE
ILRLQLDHVYTSSWFLALLAWLGLALILCSWRRQWPALQAALQWIDYQEPRQLSKLAIAE
EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHH
TISSPPKNESIDKLAAHLHQQGWQVQQQPGRLAARRGIIGRAGPMLVHLGLVLLMLGAVW
HHCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
GSLGGNRLEQFLAPGRSLDLLNRDGNSHLKLTLTNFGIERDPAGRPEQFRSQLELLEPGQ
HCCCHHHHHHHHCCCCCEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
DTAKLHEVSVNHPLRFHGLTVYQADWSLAAITLQLGRSPQLQLPLRTFPELGEQVWGLVL
CHHHHHEECCCCCEEEEEEEEEECCCCEEEEEEECCCCCCEECCHHHHHHHHHHHCEEEE
PTNPDGSEPVLLSLTSEAGPVQVFDATGERLASLRPAGPTAEVKGIPIRIVDVLPASGLL
ECCCCCCCCEEEEEECCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEE
LKRDPGVPLVYIGFLITLVGGGLSMIATRQLWAVGDPENECLHVGGLCNRNLTGFANELP
EECCCCCCHHHHHHHHHHHCCCHHHHHHHHHEECCCCCCCEEEECCCCCCCCCHHHHHHH
SLLAAAVPQQ
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA