Click here to switch to the map view.

The map label for this gene is psbV [H]

Identifier: 33863694

GI number: 33863694

Start: 1515353

End: 1515865

Strand: Direct

Name: psbV [H]

Synonym: PMT1427

Alternate gene names: 33863694

Gene position: 1515353-1515865 (Clockwise)

Preceding gene: 33863693

Following gene: 33863699

Centisome position: 62.85

GC content: 54.97

Gene sequence:

>513_bases
ATGGCCTCTCTCTTTGCATCCCTGGGACGGTCCCTGATCAAACTATTGATCGTGTTGCCCGTAATAATTGGCTTGAGCAT
TAGCTCTCCGGCCATGGCTGCCCAATGGGATGCCGAGACCCTCACCGTTCCCGCAGGCTCAGGCGGACAGCAGGTGACCT
TCACCGAGTCAGAAATCAAGAGCGCTAGCAAGCTCTTCAAAAGCAACTGCGCCACCTGCCATAACCAAGGCGTCACCAAG
ACCAATCAAAACGTTGGTCTCGACCTTGAGGCTCTCTCACTGGCATCACCTGCTCGTGACAACGTGGACGGCCTGGTCGA
ATTCCTGAAAAATCCCATGTCATATGACGGGGAATACAGCATTGCCGACACCCACCCAGGCATCAGCAGCAGCGATGTCT
ACGTTCAGATGCGCACGCTCAACGATGAAGACCTGCGCCTAATCGCCGGTTACATCCTCACGGCTGAGAAAGTACAGGGC
GACCAATGGGGTGGTGGCAAGATCTACTTCTGA

Upstream 100 bases:

>100_bases
TGAAGTCGCTCCGCGCTGCAACAGTTCTTGATTACGGCCCTTAGAGCTCCCGCCCCGTGATACAAGGTGTTGTCGCTTCT
GTCAGTAACTGGCGTATTCC

Downstream 100 bases:

>100_bases
TCGCTTAAGAAGCAAAAACAATCATGGGATCTCAGCTAAAGCTGGGGTCCTTTTTTTTGCCTAAAAAATTGGCAGTGAGC
TCGCTCGCCAGAGTCTTATC

Product: cytochrome c-550

Products: NA

Alternate protein names: Cytochrome c550; Low-potential cytochrome c [H]

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MASLFASLGRSLIKLLIVLPVIIGLSISSPAMAAQWDAETLTVPAGSGGQQVTFTESEIKSASKLFKSNCATCHNQGVTK
TNQNVGLDLEALSLASPARDNVDGLVEFLKNPMSYDGEYSIADTHPGISSSDVYVQMRTLNDEDLRLIAGYILTAEKVQG
DQWGGGKIYF

Sequences:

>Translated_170_residues
MASLFASLGRSLIKLLIVLPVIIGLSISSPAMAAQWDAETLTVPAGSGGQQVTFTESEIKSASKLFKSNCATCHNQGVTK
TNQNVGLDLEALSLASPARDNVDGLVEFLKNPMSYDGEYSIADTHPGISSSDVYVQMRTLNDEDLRLIAGYILTAEKVQG
DQWGGGKIYF
>Mature_169_residues
ASLFASLGRSLIKLLIVLPVIIGLSISSPAMAAQWDAETLTVPAGSGGQQVTFTESEIKSASKLFKSNCATCHNQGVTKT
NQNVGLDLEALSLASPARDNVDGLVEFLKNPMSYDGEYSIADTHPGISSSDVYVQMRTLNDEDLRLIAGYILTAEKVQGD
QWGGGKIYF

Specific function: Low-potential cytochrome c that plays a role in the oxygen-evolving complex of photosystem II [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Peripheral membrane protein; Lumenal side. Note=Associated with photosystem II at the lumenal side of the thylakoid membrane (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family. PsbV subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009056
- InterPro:   IPR003088
- InterPro:   IPR016003
- InterPro:   IPR017851 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 18174; Mature: 18043

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASLFASLGRSLIKLLIVLPVIIGLSISSPAMAAQWDAETLTVPAGSGGQQVTFTESEIK
CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCCCEEEEEHHHHH
SASKLFKSNCATCHNQGVTKTNQNVGLDLEALSLASPARDNVDGLVEFLKNPMSYDGEYS
HHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEE
IADTHPGISSSDVYVQMRTLNDEDLRLIAGYILTAEKVQGDQWGGGKIYF
ECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEECC
>Mature Secondary Structure 
ASLFASLGRSLIKLLIVLPVIIGLSISSPAMAAQWDAETLTVPAGSGGQQVTFTESEIK
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCCCEEEEEHHHHH
SASKLFKSNCATCHNQGVTKTNQNVGLDLEALSLASPARDNVDGLVEFLKNPMSYDGEYS
HHHHHHHHHCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCEE
IADTHPGISSSDVYVQMRTLNDEDLRLIAGYILTAEKVQGDQWGGGKIYF
ECCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA