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The map label for this gene is xisA [H]

Identifier: 33863509

GI number: 33863509

Start: 1329296

End: 1330459

Strand: Direct

Name: xisA [H]

Synonym: PMT1241

Alternate gene names: 33863509

Gene position: 1329296-1330459 (Clockwise)

Preceding gene: 33863503

Following gene: 33863510

Centisome position: 55.14

GC content: 53.95

Gene sequence:

>1164_bases
ATGGAGCTGAGCAACGAGCTAATCAACATCAACCGTGCCCTGGCTGACAGCGGCATCAACCTGAGAATTGAACAGCGAGG
CCAGTGGCTCAATTTACGCGGCGCACTGCCCTGCCGGAATGGAACTGGATTGATCAAAACTCAACGAATCAGTTTGCAGC
TTTTGGCAGAACAAAAAGGATTGAAAGAGGCTGAGCGAATTGTGCAACTTGTGCACTACCAACTGCAACGCAAACAATTC
GACTGGTCCCAGTGGACGACCAAATCAACACGGAAACAACCTGAACAGATAGCGACAGGGCTTAGAGAAGCTTTGGTCAG
CTTTGAAGAAGCATTCTTTACTGATCCATATCGCCGACGGTCACCGGCCGGTAGCCGCAGCACATGGACGTCCGCTTACC
TTCCTTACTTACGACGACTCAAAGCCCTAGCTGTTAACAAGCAGAGCTGTTTTGATTCAGACCTTTTAAAAGACACTCTG
GCCAGTTATGCAGATGGCAGCAGAAGCCGACAGCAATGCGCCACGGCCCTAGCTGCATTGGCACGCCACCTGGAAATGAC
ACTGCCGGAAGATTGGCGAGCAGAAGCGGATGGATATGGACTGCATCAGGCGCGCTTTCGTCAACTACCCAGCGACAAGC
AGATCATCGAGGCGGTGGAGCGCATCCCCAACCCAGGATGGCGACTTGCCTATGGACTGATGGCCACTTACGGCCTGCGC
AATCACGAGGTGTTCTTCTGCGACCTTGCTGCTTTAGCGAAGGGGGAAGATCAGGTGCTGCGGGTCCTACCAAACACAAA
AACCGGCGAGCATCAGGTTTGGCCGTTTCATCCAGACTGGGTCGAGCATTTTGAACTTGAACAACTAGCAAACAATGCCC
AGGCCCTGCCGCCGGTGAATGTCGATCTGCGTCACACCACACTCCAACAGGTGGGGAGAAGAGTGTCGGAACAATTCCGA
CGCTATCAACTGCCCCTCACCCCCTACAACCTGCGGCATGCCTGGGCGGTACGCACAATCCACATCGGCCTTCCAGACAC
AGTTGCAGCAAGAATGATGGGCCATTCAGTGGCTATTCATACCCGCACCTATCACCACTGGATCACCCGACGTGACCAAC
AACAAGCGGTAGATGCAGCCCTAGCTCGACAGCTCAGCCCATGA

Upstream 100 bases:

>100_bases
ATCAAGAGGACACCGACCCGGGCCATAGAGAAGAGAGTTCTTTAGAGGGACTTGAGGGTAGCTGCCATCAACGCCAAGGT
GGCACCATCCCTACAAGGCC

Downstream 100 bases:

>100_bases
CCTCACCACTAAGAACCTTTGCCTACGAGCATCGCTGGTTTTATGACCTAGTGACAACCATTTCGGCCCTCAGCGTAGGG
GGTGTAAAGCGGTTGAGGTC

Product: phage integrase family protein

Products: NA

Alternate protein names: NifD element site-specific recombinase [H]

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MELSNELININRALADSGINLRIEQRGQWLNLRGALPCRNGTGLIKTQRISLQLLAEQKGLKEAERIVQLVHYQLQRKQF
DWSQWTTKSTRKQPEQIATGLREALVSFEEAFFTDPYRRRSPAGSRSTWTSAYLPYLRRLKALAVNKQSCFDSDLLKDTL
ASYADGSRSRQQCATALAALARHLEMTLPEDWRAEADGYGLHQARFRQLPSDKQIIEAVERIPNPGWRLAYGLMATYGLR
NHEVFFCDLAALAKGEDQVLRVLPNTKTGEHQVWPFHPDWVEHFELEQLANNAQALPPVNVDLRHTTLQQVGRRVSEQFR
RYQLPLTPYNLRHAWAVRTIHIGLPDTVAARMMGHSVAIHTRTYHHWITRRDQQQAVDAALARQLSP

Sequences:

>Translated_387_residues
MELSNELININRALADSGINLRIEQRGQWLNLRGALPCRNGTGLIKTQRISLQLLAEQKGLKEAERIVQLVHYQLQRKQF
DWSQWTTKSTRKQPEQIATGLREALVSFEEAFFTDPYRRRSPAGSRSTWTSAYLPYLRRLKALAVNKQSCFDSDLLKDTL
ASYADGSRSRQQCATALAALARHLEMTLPEDWRAEADGYGLHQARFRQLPSDKQIIEAVERIPNPGWRLAYGLMATYGLR
NHEVFFCDLAALAKGEDQVLRVLPNTKTGEHQVWPFHPDWVEHFELEQLANNAQALPPVNVDLRHTTLQQVGRRVSEQFR
RYQLPLTPYNLRHAWAVRTIHIGLPDTVAARMMGHSVAIHTRTYHHWITRRDQQQAVDAALARQLSP
>Mature_387_residues
MELSNELININRALADSGINLRIEQRGQWLNLRGALPCRNGTGLIKTQRISLQLLAEQKGLKEAERIVQLVHYQLQRKQF
DWSQWTTKSTRKQPEQIATGLREALVSFEEAFFTDPYRRRSPAGSRSTWTSAYLPYLRRLKALAVNKQSCFDSDLLKDTL
ASYADGSRSRQQCATALAALARHLEMTLPEDWRAEADGYGLHQARFRQLPSDKQIIEAVERIPNPGWRLAYGLMATYGLR
NHEVFFCDLAALAKGEDQVLRVLPNTKTGEHQVWPFHPDWVEHFELEQLANNAQALPPVNVDLRHTTLQQVGRRVSEQFR
RYQLPLTPYNLRHAWAVRTIHIGLPDTVAARMMGHSVAIHTRTYHHWITRRDQQQAVDAALARQLSP

Specific function: Essential for DNA excision. Site specific recombinase necessary for the excision of the 11 kb nifD element during heterocyst differentiation [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xisA/xisC recombinase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 44450; Mature: 44450

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELSNELININRALADSGINLRIEQRGQWLNLRGALPCRNGTGLIKTQRISLQLLAEQKG
CCCCHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCCCEEEHHHHHHHHHHHCC
LKEAERIVQLVHYQLQRKQFDWSQWTTKSTRKQPEQIATGLREALVSFEEAFFTDPYRRR
HHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHC
SPAGSRSTWTSAYLPYLRRLKALAVNKQSCFDSDLLKDTLASYADGSRSRQQCATALAAL
CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ARHLEMTLPEDWRAEADGYGLHQARFRQLPSDKQIIEAVERIPNPGWRLAYGLMATYGLR
HHHHHCCCCCHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
NHEVFFCDLAALAKGEDQVLRVLPNTKTGEHQVWPFHPDWVEHFELEQLANNAQALPPVN
CCCEEEEEHHHHHCCHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
VDLRHTTLQQVGRRVSEQFRRYQLPLTPYNLRHAWAVRTIHIGLPDTVAARMMGHSVAIH
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCEEEEE
TRTYHHWITRRDQQQAVDAALARQLSP
EHHHHHHHHCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MELSNELININRALADSGINLRIEQRGQWLNLRGALPCRNGTGLIKTQRISLQLLAEQKG
CCCCHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCCCCCCCCCEEEHHHHHHHHHHHCC
LKEAERIVQLVHYQLQRKQFDWSQWTTKSTRKQPEQIATGLREALVSFEEAFFTDPYRRR
HHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHC
SPAGSRSTWTSAYLPYLRRLKALAVNKQSCFDSDLLKDTLASYADGSRSRQQCATALAAL
CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
ARHLEMTLPEDWRAEADGYGLHQARFRQLPSDKQIIEAVERIPNPGWRLAYGLMATYGLR
HHHHHCCCCCHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
NHEVFFCDLAALAKGEDQVLRVLPNTKTGEHQVWPFHPDWVEHFELEQLANNAQALPPVN
CCCEEEEEHHHHHCCHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
VDLRHTTLQQVGRRVSEQFRRYQLPLTPYNLRHAWAVRTIHIGLPDTVAARMMGHSVAIH
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHCCEEEEE
TRTYHHWITRRDQQQAVDAALARQLSP
EHHHHHHHHCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3006922; 11759840; 3144039 [H]