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The map label for this gene is yhdX [H]

Identifier: 33863168

GI number: 33863168

Start: 976179

End: 977072

Strand: Reverse

Name: yhdX [H]

Synonym: PMT0896

Alternate gene names: 33863168

Gene position: 977072-976179 (Counterclockwise)

Preceding gene: 33863169

Following gene: 33863167

Centisome position: 40.53

GC content: 50.56

Gene sequence:

>894_bases
ATGAAACGCTCGCAGCACTTTTGCTTGCAAGTTGGCGTCGCTCTCGCTCTGCTGACCATTCTTGGCGTGTTGATCAACAA
TCTCGCTGTGAATCTGATCCGCACGGACATGGGGCTCAGCTTTCTTTGGTTAGGACGACCTGCAGGCTTTGCTCTAGCTG
AACATCCGCTGTCTTATAGGCCTTCGGATAGTTATGCCTGGGCTCTTTGCATGGGCTGGCTAAACAGCCTCAAGGTCATC
CTTTGCGGCCTTATTCTGGCCACGGTGATTGGAGTGCTTGCAGGCGCTGCCAGAAGTAGCCGCAATCTGCTGTTGCGAGC
AATGTCGAGCGGATATGTGGCCTTGATCCGGCAGATCCCTCTGTTGCTTCAGCTGTTGTTTTGGTATTTCGTTGCTTTCT
TAAGCCTTTCCGGGACCCCCTTGGCGCCATTAGGAGCCTTGATACGTGTCTCGAACCAAGGCATCGAATTGCTTGGCCTA
CATCTGAGCGTTGAATTTTCGGCTTTATTAGTGGGCCTAAGCGTCTTCACAGCAGCATCGATTGCTGAAATTGTCCGCGG
TGGATTGAATTCTGTTCCGAGTGGTCAATGGGAAGCGTTTCGCAGTCTTGGTTTACCAGAACGTTTTGGGTTACGTCGGG
TGGTGTTACCTCAAGCTTTACCAGCCATCCTGCCTGGCCTGACAAGCCAATATCTCAACTTGGCCAAAAACAGCACATTG
GCGATCGCCGTAGGTTATGCCGATGTCTATGCGGTAAGTGATACGACAATCACACAGACCGGCAGAGCGATTGAAGGATT
CTTCTTGTTGTTAATCAGTTTTTTGCTGCTTAACCTTCTGATCACTGGAGGGATGGAAGTTCTCAATCGGATTGTGATCA
GATCCCAGCAATAG

Upstream 100 bases:

>100_bases
ACCTCGGTCCAAACAGTTCTGTGCCAATTCCCAGAGGCCGAAATCGCTCCTATCGGCAAGGTGGCTTACTGATCGCGCCA
CCATTTAACTAACCCCCCCC

Downstream 100 bases:

>100_bases
CCTTAAGCTCAATTAGGTTTTTGTTTTTCATGGATTCTTTACTTCAACGGCGCATCGCAGCAGTGCTCTTGTTTATTGCA
GCTGCCATTGCCATCCTTTT

Product: amino acid ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYRPSDSYAWALCMGWLNSLKVI
LCGLILATVIGVLAGAARSSRNLLLRAMSSGYVALIRQIPLLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGL
HLSVEFSALLVGLSVFTAASIAEIVRGGLNSVPSGQWEAFRSLGLPERFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
AIAVGYADVYAVSDTTITQTGRAIEGFFLLLISFLLLNLLITGGMEVLNRIVIRSQQ

Sequences:

>Translated_297_residues
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYRPSDSYAWALCMGWLNSLKVI
LCGLILATVIGVLAGAARSSRNLLLRAMSSGYVALIRQIPLLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGL
HLSVEFSALLVGLSVFTAASIAEIVRGGLNSVPSGQWEAFRSLGLPERFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
AIAVGYADVYAVSDTTITQTGRAIEGFFLLLISFLLLNLLITGGMEVLNRIVIRSQQ
>Mature_297_residues
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYRPSDSYAWALCMGWLNSLKVI
LCGLILATVIGVLAGAARSSRNLLLRAMSSGYVALIRQIPLLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGL
HLSVEFSALLVGLSVFTAASIAEIVRGGLNSVPSGQWEAFRSLGLPERFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
AIAVGYADVYAVSDTTITQTGRAIEGFFLLLISFLLLNLLITGGMEVLNRIVIRSQQ

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4597

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI48994930, Length=133, Percent_Identity=49.6240601503759, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1786874, Length=251, Percent_Identity=28.2868525896414, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1788226, Length=207, Percent_Identity=26.5700483091787, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787030, Length=215, Percent_Identity=27.4418604651163, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787087, Length=220, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87082239, Length=185, Percent_Identity=30.8108108108108, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786873, Length=220, Percent_Identity=25.9090909090909, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32001; Mature: 32001

Theoretical pI: Translated: 10.11; Mature: 10.11

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCCCCC
PSDSYAWALCMGWLNSLKVILCGLILATVIGVLAGAARSSRNLLLRAMSSGYVALIRQIP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH
LLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGLHLSVEFSALLVGLSVFTAAS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHH
IAEIVRGGLNSVPSGQWEAFRSLGLPERFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
HHHHHHCCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
AIAVGYADVYAVSDTTITQTGRAIEGFFLLLISFLLLNLLITGGMEVLNRIVIRSQQ
EEEEECHHEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC
>Mature Secondary Structure
MKRSQHFCLQVGVALALLTILGVLINNLAVNLIRTDMGLSFLWLGRPAGFALAEHPLSYR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHCCCCCCC
PSDSYAWALCMGWLNSLKVILCGLILATVIGVLAGAARSSRNLLLRAMSSGYVALIRQIP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHH
LLLQLLFWYFVAFLSLSGTPLAPLGALIRVSNQGIELLGLHLSVEFSALLVGLSVFTAAS
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHH
IAEIVRGGLNSVPSGQWEAFRSLGLPERFGLRRVVLPQALPAILPGLTSQYLNLAKNSTL
HHHHHHCCCCCCCCCHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
AIAVGYADVYAVSDTTITQTGRAIEGFFLLLISFLLLNLLITGGMEVLNRIVIRSQQ
EEEEECHHEEEECCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]