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The map label for this gene is secD [H]

Identifier: 33862890

GI number: 33862890

Start: 671084

End: 672571

Strand: Reverse

Name: secD [H]

Synonym: PMT0617

Alternate gene names: 33862890

Gene position: 672571-671084 (Counterclockwise)

Preceding gene: 33862891

Following gene: 33862889

Centisome position: 27.9

GC content: 53.29

Gene sequence:

>1488_bases
ATGGCACGTCAACAAGGCTGGTTTGCGCTCATTCTTGCTCTTGCCATTGCGGCAGGTTCTGTCACTGCAAGCTTTCCGCT
TGAGTTGGGCCTTGATCTTCGTGGTGGCAGTCAGCTCACTCTTGAAGTGCAGCCCGCTGGTGAGATCACTCGCGTGAAAT
CGGAGCAGCTAGAGGCGGTCAAAGCTGTTTTGGATCGTCGCGTCAATGGCTTGGGTGTTGCCGAATCCACCCTGCAGACC
ATTGGTGACAATCAACTGGTGTTGCAGCTTCCAGGAGAACAGGATCCCACCAGGGCTGCCAAGGTGCTTGGCGAGACGGC
CTTACTTGAGTTTCGAGCTCAAAAACCTGGCACAGAACAGGAGGTTCGCGGCCTTCAGCGCCTAAAACGACAGGTAGAGA
GCATTCTCAAGTCCAAGCAGGAGCGTGCGATATCCGGAGAGTCTCCCTCTGATGATGAACTCGACAAACAGCAACTTGTT
GAAGCGCAGCAGGCCTTTGGTTTGCAAGGCAGTGTTGGCAGTGAGGTCGAGCAGCTGGAACAGTTGAATGAGAAAGTCAG
CATCAAGATCGCTGAACTCTTCGAGCCCACGTCATTAACCGGGAAGGATCTGGTCACAGCTGGGCGTCAGCAACAGCAGA
ACGTTCCTGACAGCTGGGAGGTGACACTTAGCTTCAACCGAGAAGGCGGAGATCAATTCGCCGAGCTAACACAATCAATT
GCTGGCACAGGTCGTCTACTTGGCATCGTTCTTGATGGAAGGTCGATCAGTGAAGCCAGCGTCGGGGAACAGTTCAGAGC
CGCTGGCATTACTGGTGGTGCGGCCACGATCAGCGGTAATTTCAATGCTGAAGATGCCCGCGACCTGGAAGTTCAGTTAC
GAGGTGGTTCGTTGCCATTACCAGTAGAAATTCTCGAGGTTCGAACCATTGGTCCCACCCTTGGTGCTGAAAACATTCGC
CGCAGCTTGATCGCAGCGCTCTCTGGTCTCGCCTTGGTGGCTGTTTTCATGGTGGTTGCTTATCGCCTTGCGGGCTTGGT
GGCGGTGTTGGCATTGAGTCTTTATGCCCTGTTCAATCTCGCTATGTATGCTCTGATTCCTGTCATCCTTACCCTGCCTG
GGATTGCGGGTTTCATCCTCAGTATTGGCATGGCAGTGGATGCCAATGTGCTGATCTTTGAGCGTGTCAAAGATGAATTG
CGGCGTGGAAACACCTTGATTCGCTCGATCGAGACTGGATTTTCCCAGGCTTTGTCGTCGATCGTTGACGGCCATCTCAC
CACTCTGATTAGTTGCGCAGCGCTCTTTTTTCTGGGTACGGGTTTGGTTAAAGGTTTTGCCGCCACCCTCGGCATCGGTG
TTGTGCTCAGTTTGTTTACGGCATTGAGCTGCACTCGCACTCTGCTGCGTTTTTTGATGGGCTATCAGGCTTTGAGGCGA
CCTACCAACTTTTTGCCTGCCAAACAGTTGCCTTCTTCTCTCGCCTGA

Upstream 100 bases:

>100_bases
TCCCACTCCATATAACGGCAAATTGGAGAATTTCACGATCATTCAGCCTCATCAGATTGTTGAAGCGGCTAAGCAGATTG
TTCTTAAGGGGCTTTGATTG

Downstream 100 bases:

>100_bases
TCCATGGCTGTTTCATCATCTTCAGGAACTCGTCAACGCCCACTGAGATTTGAACTTTGTCGTCAACGACGACGAGTTTG
GGGAATCTCAGGCCTGTTTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 495; Mature: 494

Protein sequence:

>495_residues
MARQQGWFALILALAIAAGSVTASFPLELGLDLRGGSQLTLEVQPAGEITRVKSEQLEAVKAVLDRRVNGLGVAESTLQT
IGDNQLVLQLPGEQDPTRAAKVLGETALLEFRAQKPGTEQEVRGLQRLKRQVESILKSKQERAISGESPSDDELDKQQLV
EAQQAFGLQGSVGSEVEQLEQLNEKVSIKIAELFEPTSLTGKDLVTAGRQQQQNVPDSWEVTLSFNREGGDQFAELTQSI
AGTGRLLGIVLDGRSISEASVGEQFRAAGITGGAATISGNFNAEDARDLEVQLRGGSLPLPVEILEVRTIGPTLGAENIR
RSLIAALSGLALVAVFMVVAYRLAGLVAVLALSLYALFNLAMYALIPVILTLPGIAGFILSIGMAVDANVLIFERVKDEL
RRGNTLIRSIETGFSQALSSIVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTALSCTRTLLRFLMGYQALRR
PTNFLPAKQLPSSLA

Sequences:

>Translated_495_residues
MARQQGWFALILALAIAAGSVTASFPLELGLDLRGGSQLTLEVQPAGEITRVKSEQLEAVKAVLDRRVNGLGVAESTLQT
IGDNQLVLQLPGEQDPTRAAKVLGETALLEFRAQKPGTEQEVRGLQRLKRQVESILKSKQERAISGESPSDDELDKQQLV
EAQQAFGLQGSVGSEVEQLEQLNEKVSIKIAELFEPTSLTGKDLVTAGRQQQQNVPDSWEVTLSFNREGGDQFAELTQSI
AGTGRLLGIVLDGRSISEASVGEQFRAAGITGGAATISGNFNAEDARDLEVQLRGGSLPLPVEILEVRTIGPTLGAENIR
RSLIAALSGLALVAVFMVVAYRLAGLVAVLALSLYALFNLAMYALIPVILTLPGIAGFILSIGMAVDANVLIFERVKDEL
RRGNTLIRSIETGFSQALSSIVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTALSCTRTLLRFLMGYQALRR
PTNFLPAKQLPSSLA
>Mature_494_residues
ARQQGWFALILALAIAAGSVTASFPLELGLDLRGGSQLTLEVQPAGEITRVKSEQLEAVKAVLDRRVNGLGVAESTLQTI
GDNQLVLQLPGEQDPTRAAKVLGETALLEFRAQKPGTEQEVRGLQRLKRQVESILKSKQERAISGESPSDDELDKQQLVE
AQQAFGLQGSVGSEVEQLEQLNEKVSIKIAELFEPTSLTGKDLVTAGRQQQQNVPDSWEVTLSFNREGGDQFAELTQSIA
GTGRLLGIVLDGRSISEASVGEQFRAAGITGGAATISGNFNAEDARDLEVQLRGGSLPLPVEILEVRTIGPTLGAENIRR
SLIAALSGLALVAVFMVVAYRLAGLVAVLALSLYALFNLAMYALIPVILTLPGIAGFILSIGMAVDANVLIFERVKDELR
RGNTLIRSIETGFSQALSSIVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTALSCTRTLLRFLMGYQALRRP
TNFLPAKQLPSSLA

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=443, Percent_Identity=33.1828442437923, Blast_Score=211, Evalue=7e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 52773; Mature: 52641

Theoretical pI: Translated: 4.92; Mature: 4.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQQGWFALILALAIAAGSVTASFPLELGLDLRGGSQLTLEVQPAGEITRVKSEQLEAV
CCCCCHHHHHHHHHHHHHCCCCEECCCEECCEECCCCEEEEEECCCCCHHHHHHHHHHHH
KAVLDRRVNGLGVAESTLQTIGDNQLVLQLPGEQDPTRAAKVLGETALLEFRAQKPGTEQ
HHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
EVRGLQRLKRQVESILKSKQERAISGESPSDDELDKQQLVEAQQAFGLQGSVGSEVEQLE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QLNEKVSIKIAELFEPTSLTGKDLVTAGRQQQQNVPDSWEVTLSFNREGGDQFAELTQSI
HHHHHHEEEHHHHCCCCCCCCHHHHHCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
AGTGRLLGIVLDGRSISEASVGEQFRAAGITGGAATISGNFNAEDARDLEVQLRGGSLPL
HCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCC
PVEILEVRTIGPTLGAENIRRSLIAALSGLALVAVFMVVAYRLAGLVAVLALSLYALFNL
CHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMYALIPVILTLPGIAGFILSIGMAVDANVLIFERVKDELRRGNTLIRSIETGFSQALSS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
IVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTALSCTRTLLRFLMGYQALRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PTNFLPAKQLPSSLA
CCCCCCHHHCCCCCC
>Mature Secondary Structure 
ARQQGWFALILALAIAAGSVTASFPLELGLDLRGGSQLTLEVQPAGEITRVKSEQLEAV
CCCCHHHHHHHHHHHHHCCCCEECCCEECCEECCCCEEEEEECCCCCHHHHHHHHHHHH
KAVLDRRVNGLGVAESTLQTIGDNQLVLQLPGEQDPTRAAKVLGETALLEFRAQKPGTEQ
HHHHHHCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHH
EVRGLQRLKRQVESILKSKQERAISGESPSDDELDKQQLVEAQQAFGLQGSVGSEVEQLE
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH
QLNEKVSIKIAELFEPTSLTGKDLVTAGRQQQQNVPDSWEVTLSFNREGGDQFAELTQSI
HHHHHHEEEHHHHCCCCCCCCHHHHHCCHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
AGTGRLLGIVLDGRSISEASVGEQFRAAGITGGAATISGNFNAEDARDLEVQLRGGSLPL
HCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCC
PVEILEVRTIGPTLGAENIRRSLIAALSGLALVAVFMVVAYRLAGLVAVLALSLYALFNL
CHHHEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AMYALIPVILTLPGIAGFILSIGMAVDANVLIFERVKDELRRGNTLIRSIETGFSQALSS
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
IVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTALSCTRTLLRFLMGYQALRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PTNFLPAKQLPSSLA
CCCCCCHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]