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The map label for this gene is yodJ [H]

Identifier: 33862849

GI number: 33862849

Start: 630211

End: 630825

Strand: Reverse

Name: yodJ [H]

Synonym: PMT0576

Alternate gene names: 33862849

Gene position: 630825-630211 (Counterclockwise)

Preceding gene: 33862851

Following gene: 33862848

Centisome position: 26.17

GC content: 52.36

Gene sequence:

>615_bases
ATGGTGTTTGGAGGTTCCATCACAGCTGTGTTGTTCGGCCCGTGGCTATTTGCTGGGCTTATGGGTCCAGCTCCTGTTGA
GGGCATCCAGGATCGTCCTACTGCTGACGGACGTCTGCTCGGACATTTCCCTTATCCAGAAGCCTCAGTACAGGATCGAA
TTCTCATGCAGCCTGGGATTGAGCTTCATCACGAAGCCGCTGATGCATTGAGTTCCATGCGTGCTGCGGCTTCAGCAGAT
GGTGTTGATTTGAGGCTGTTGAGTGGCTACCGCTCTCACGACCTACAAGAGCGAATCTTTTTTGATATCAAATCAGACCG
GAACCAGACAGCAGCCGAACGGGCCAAGGTCTCTGCACCTCCAGGGTATTCCGAACACAGCACTGGCTATGCCATTGATC
TTGGTGACGGGACGCTTCCTGAAGCGAATCTGTCTGAAAGCTTCGAAGCCACGAGGGCGTTCCGCTGGCTACAGGATCAT
GCTGCTAGTTATCACTTTGTCCTTTCCTTTCCCCTTGATAACCCACAGGGTGTGACTTATGAGCCTTGGCATTGGCGATT
TGAGGGTTCAGCTTCTGCTCTGAGACTCTTTGAATCGGCTCATCAACTGGAATGA

Upstream 100 bases:

>100_bases
CGCTCGACGCATCAGCCGAGATGACATTCCCGTTGCTCGTCGGTCGCGTCCTCAGAGACGGGCAAGGGGTGGTTCATTGG
GATTATTGGTGGCTTGTTTG

Downstream 100 bases:

>100_bases
ATGAACTGAAGAAGTTTTTTTCGGTCTTAGAAGTTTTGATTAGCTAGCGGAAGGGGCCTAGAAGTTAAGTCGAATCTCAA
ATTGAGATATCCTTCCGCCA

Product: carboxypeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 204; Mature: 204

Protein sequence:

>204_residues
MVFGGSITAVLFGPWLFAGLMGPAPVEGIQDRPTADGRLLGHFPYPEASVQDRILMQPGIELHHEAADALSSMRAAASAD
GVDLRLLSGYRSHDLQERIFFDIKSDRNQTAAERAKVSAPPGYSEHSTGYAIDLGDGTLPEANLSESFEATRAFRWLQDH
AASYHFVLSFPLDNPQGVTYEPWHWRFEGSASALRLFESAHQLE

Sequences:

>Translated_204_residues
MVFGGSITAVLFGPWLFAGLMGPAPVEGIQDRPTADGRLLGHFPYPEASVQDRILMQPGIELHHEAADALSSMRAAASAD
GVDLRLLSGYRSHDLQERIFFDIKSDRNQTAAERAKVSAPPGYSEHSTGYAIDLGDGTLPEANLSESFEATRAFRWLQDH
AASYHFVLSFPLDNPQGVTYEPWHWRFEGSASALRLFESAHQLE
>Mature_204_residues
MVFGGSITAVLFGPWLFAGLMGPAPVEGIQDRPTADGRLLGHFPYPEASVQDRILMQPGIELHHEAADALSSMRAAASAD
GVDLRLLSGYRSHDLQERIFFDIKSDRNQTAAERAKVSAPPGYSEHSTGYAIDLGDGTLPEANLSESFEATRAFRWLQDH
AASYHFVLSFPLDNPQGVTYEPWHWRFEGSASALRLFESAHQLE

Specific function: Unknown

COG id: COG1876

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M15B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009045
- InterPro:   IPR003709 [H]

Pfam domain/function: PF02557 VanY [H]

EC number: NA

Molecular weight: Translated: 22471; Mature: 22471

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFGGSITAVLFGPWLFAGLMGPAPVEGIQDRPTADGRLLGHFPYPEASVQDRILMQPGI
CEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCC
ELHHEAADALSSMRAAASADGVDLRLLSGYRSHDLQERIFFDIKSDRNQTAAERAKVSAP
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHEEEECCCCCHHHHHHHCCCCC
PGYSEHSTGYAIDLGDGTLPEANLSESFEATRAFRWLQDHAASYHFVLSFPLDNPQGVTY
CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
EPWHWRFEGSASALRLFESAHQLE
CCCEEEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MVFGGSITAVLFGPWLFAGLMGPAPVEGIQDRPTADGRLLGHFPYPEASVQDRILMQPGI
CEECCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECCCC
ELHHEAADALSSMRAAASADGVDLRLLSGYRSHDLQERIFFDIKSDRNQTAAERAKVSAP
HHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHEEEECCCCCHHHHHHHCCCCC
PGYSEHSTGYAIDLGDGTLPEANLSESFEATRAFRWLQDHAASYHFVLSFPLDNPQGVTY
CCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
EPWHWRFEGSASALRLFESAHQLE
CCCEEEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]