Definition Prochlorococcus marinus str. MIT 9313 chromosome, complete genome.
Accession NC_005071
Length 2,410,873

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The map label for this gene is ybbO [C]

Identifier: 33862753

GI number: 33862753

Start: 530611

End: 531513

Strand: Reverse

Name: ybbO [C]

Synonym: PMT0480

Alternate gene names: 33862753

Gene position: 531513-530611 (Counterclockwise)

Preceding gene: 33862754

Following gene: 33862747

Centisome position: 22.05

GC content: 49.17

Gene sequence:

>903_bases
ATGAGCTGGAAAGTTGCAGATATCCCTGATCAAAAAGGAAGGGTTGCATTAGTAACAGGTGCCAATAGTGGCCTTGGTCT
TGAGACAGCCAAGGCATTGCTTAATAAGGGTGCCAGAGTCATTATGGCTTGTCGCTCACTACCCACAGGTGAAGATGTAC
GCCAGGTTATTCTCGAGAGAAATGATTCCACAAAGCTTGATCTGATTGAGTTGGATCTCGCTGATTTAGCGAGCGTTAGG
CGTGCAGCTGAGCAGGTAGAAAGCCAATACAGCCGAGTGGACCTTCTAATTAACAATGCTGGAGTGATGGCTACTCCAAA
GACCCTCAGCAAACAGGGTCTGGAGCTTCAGTTCGCCGTTAATCATCTTGGCCACATGGCATTAACACTAAAGCTCCTAC
CCTTACTCGCAAAGCAACATGGAGCAAGGGTTGTTACCGTCACTTCTGGCGCACAGTACATGGGTCGAATCGCATGGGAC
GATCTTCAAGGGATCAAGCAATATGACCGCTGGGCTGCCTACTCACAAAGTAAACTTGCGAATGTGATGTTCGCCTTAGA
GCTCGACAAGCGAATGCGCCAGACAGCAAGTGGGATCGCATCATTGTTGGCACATCCAGGTCTGGCCCGCACTAATTTGC
AGCCTAAATCTGTTGCTGCGAACAAATCCTGGCAGGAAGGCCTTGCTTATCGGTTAATGGATCCCATGTTTCAGAGCGCT
GCAATGGGGTCTCTACCACAATTACATGCTGCAACCGCGCCAACTGCTCAAGGCGGCGAACAATACGGACCTAGATTTAA
CTTTAGGGGTTACCCGAAGCTTTGCAGCGTTGCCCCATTGGCACTTAGGGAGGAAGACCGTCAAAGGCTTTGGAGCATCA
GTGAAAAACTTTTAGAGATTTGA

Upstream 100 bases:

>100_bases
TGTACCCATTTAGAAATTACAGGCCTTCTCAAGATGCTATGAAGCAGCTTAGGCTTCAATGTTCTACTTTATGGATCACC
ACTGATAAGGGAGCCACCTG

Downstream 100 bases:

>100_bases
ACTTGCCATTAACAAGTATTTTAACGCTTTCCTTGGTTTAATCTGTCACTTTCGACTCTCACAGCTATGATCTAAAGGCA
GTGAATTCCGCCCATGCCTG

Product: short-chain dehydrogenase/reductase

Products: protochlorophyllide; NADPH; H+

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MSWKVADIPDQKGRVALVTGANSGLGLETAKALLNKGARVIMACRSLPTGEDVRQVILERNDSTKLDLIELDLADLASVR
RAAEQVESQYSRVDLLINNAGVMATPKTLSKQGLELQFAVNHLGHMALTLKLLPLLAKQHGARVVTVTSGAQYMGRIAWD
DLQGIKQYDRWAAYSQSKLANVMFALELDKRMRQTASGIASLLAHPGLARTNLQPKSVAANKSWQEGLAYRLMDPMFQSA
AMGSLPQLHAATAPTAQGGEQYGPRFNFRGYPKLCSVAPLALREEDRQRLWSISEKLLEI

Sequences:

>Translated_300_residues
MSWKVADIPDQKGRVALVTGANSGLGLETAKALLNKGARVIMACRSLPTGEDVRQVILERNDSTKLDLIELDLADLASVR
RAAEQVESQYSRVDLLINNAGVMATPKTLSKQGLELQFAVNHLGHMALTLKLLPLLAKQHGARVVTVTSGAQYMGRIAWD
DLQGIKQYDRWAAYSQSKLANVMFALELDKRMRQTASGIASLLAHPGLARTNLQPKSVAANKSWQEGLAYRLMDPMFQSA
AMGSLPQLHAATAPTAQGGEQYGPRFNFRGYPKLCSVAPLALREEDRQRLWSISEKLLEI
>Mature_299_residues
SWKVADIPDQKGRVALVTGANSGLGLETAKALLNKGARVIMACRSLPTGEDVRQVILERNDSTKLDLIELDLADLASVRR
AAEQVESQYSRVDLLINNAGVMATPKTLSKQGLELQFAVNHLGHMALTLKLLPLLAKQHGARVVTVTSGAQYMGRIAWDD
LQGIKQYDRWAAYSQSKLANVMFALELDKRMRQTASGIASLLAHPGLARTNLQPKSVAANKSWQEGLAYRLMDPMFQSAA
MGSLPQLHAATAPTAQGGEQYGPRFNFRGYPKLCSVAPLALREEDRQRLWSISEKLLEI

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI186928839, Length=291, Percent_Identity=38.4879725085911, Blast_Score=172, Evalue=3e-43,
Organism=Homo sapiens, GI7706523, Length=301, Percent_Identity=34.5514950166113, Blast_Score=154, Evalue=9e-38,
Organism=Homo sapiens, GI166795268, Length=291, Percent_Identity=35.3951890034364, Blast_Score=154, Evalue=1e-37,
Organism=Homo sapiens, GI10190746, Length=309, Percent_Identity=36.2459546925566, Blast_Score=148, Evalue=7e-36,
Organism=Homo sapiens, GI225579078, Length=299, Percent_Identity=36.1204013377926, Blast_Score=147, Evalue=1e-35,
Organism=Homo sapiens, GI193804850, Length=293, Percent_Identity=32.7645051194539, Blast_Score=132, Evalue=3e-31,
Organism=Homo sapiens, GI146231950, Length=206, Percent_Identity=40.7766990291262, Blast_Score=118, Evalue=6e-27,
Organism=Homo sapiens, GI19923931, Length=230, Percent_Identity=36.9565217391304, Blast_Score=115, Evalue=5e-26,
Organism=Homo sapiens, GI7705421, Length=233, Percent_Identity=26.6094420600858, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI72534732, Length=153, Percent_Identity=33.9869281045752, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI13375997, Length=153, Percent_Identity=33.9869281045752, Blast_Score=82, Evalue=5e-16,
Organism=Homo sapiens, GI20149619, Length=233, Percent_Identity=30.0429184549356, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI40548397, Length=215, Percent_Identity=32.5581395348837, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI214010158, Length=215, Percent_Identity=32.5581395348837, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI214010156, Length=215, Percent_Identity=32.5581395348837, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI22758144, Length=215, Percent_Identity=32.5581395348837, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI7706318, Length=228, Percent_Identity=28.0701754385965, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI224922801, Length=132, Percent_Identity=32.5757575757576, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI31542939, Length=132, Percent_Identity=32.5757575757576, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1786701, Length=203, Percent_Identity=32.0197044334975, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786812, Length=207, Percent_Identity=29.4685990338164, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17558006, Length=211, Percent_Identity=36.9668246445498, Blast_Score=126, Evalue=2e-29,
Organism=Caenorhabditis elegans, GI17532791, Length=255, Percent_Identity=30.9803921568627, Blast_Score=120, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI193207620, Length=299, Percent_Identity=29.7658862876254, Blast_Score=116, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17532805, Length=306, Percent_Identity=29.4117647058824, Blast_Score=115, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17505416, Length=215, Percent_Identity=33.0232558139535, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71992402, Length=258, Percent_Identity=29.0697674418605, Blast_Score=105, Evalue=3e-23,
Organism=Caenorhabditis elegans, GI72001364, Length=212, Percent_Identity=32.5471698113208, Blast_Score=98, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI32565532, Length=211, Percent_Identity=30.3317535545024, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17535059, Length=258, Percent_Identity=27.5193798449612, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI115533174, Length=181, Percent_Identity=32.0441988950276, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI115533172, Length=181, Percent_Identity=32.0441988950276, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=211, Percent_Identity=27.4881516587678, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324820, Length=320, Percent_Identity=26.875, Blast_Score=97, Evalue=4e-21,
Organism=Saccharomyces cerevisiae, GI6322227, Length=210, Percent_Identity=24.7619047619048, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI45554248, Length=293, Percent_Identity=39.2491467576792, Blast_Score=168, Evalue=4e-42,
Organism=Drosophila melanogaster, GI24640117, Length=293, Percent_Identity=39.2491467576792, Blast_Score=168, Evalue=4e-42,
Organism=Drosophila melanogaster, GI28573296, Length=287, Percent_Identity=37.6306620209059, Blast_Score=166, Evalue=2e-41,
Organism=Drosophila melanogaster, GI22024069, Length=291, Percent_Identity=36.426116838488, Blast_Score=160, Evalue=1e-39,
Organism=Drosophila melanogaster, GI19921754, Length=287, Percent_Identity=37.9790940766551, Blast_Score=159, Evalue=3e-39,
Organism=Drosophila melanogaster, GI24586328, Length=287, Percent_Identity=36.2369337979094, Blast_Score=156, Evalue=2e-38,
Organism=Drosophila melanogaster, GI161076371, Length=245, Percent_Identity=37.1428571428571, Blast_Score=151, Evalue=4e-37,
Organism=Drosophila melanogaster, GI20129347, Length=297, Percent_Identity=32.6599326599327, Blast_Score=139, Evalue=2e-33,
Organism=Drosophila melanogaster, GI24656154, Length=254, Percent_Identity=36.6141732283465, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI19922628, Length=254, Percent_Identity=36.6141732283465, Blast_Score=135, Evalue=3e-32,
Organism=Drosophila melanogaster, GI45553409, Length=301, Percent_Identity=32.2259136212625, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24647948, Length=301, Percent_Identity=32.2259136212625, Blast_Score=129, Evalue=3e-30,
Organism=Drosophila melanogaster, GI24647946, Length=301, Percent_Identity=32.2259136212625, Blast_Score=128, Evalue=4e-30,
Organism=Drosophila melanogaster, GI24647931, Length=313, Percent_Identity=27.4760383386581, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21358495, Length=205, Percent_Identity=32.6829268292683, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI116007236, Length=204, Percent_Identity=26.4705882352941, Blast_Score=65, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.3.1.33

Molecular weight: Translated: 32890; Mature: 32759

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSWKVADIPDQKGRVALVTGANSGLGLETAKALLNKGARVIMACRSLPTGEDVRQVILER
CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHEEHHHHCCCCCHHHHHHHHHC
NDSTKLDLIELDLADLASVRRAAEQVESQYSRVDLLINNAGVMATPKTLSKQGLELQFAV
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCHHHHHCCCEEEEHH
NHLGHMALTLKLLPLLAKQHGARVVTVTSGAQYMGRIAWDDLQGIKQYDRWAAYSQSKLA
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVMFALELDKRMRQTASGIASLLAHPGLARTNLQPKSVAANKSWQEGLAYRLMDPMFQSA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
AMGSLPQLHAATAPTAQGGEQYGPRFNFRGYPKLCSVAPLALREEDRQRLWSISEKLLEI
HHCCCCHHHHCCCCCCCCCHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SWKVADIPDQKGRVALVTGANSGLGLETAKALLNKGARVIMACRSLPTGEDVRQVILER
CCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCHHEEHHHHCCCCCHHHHHHHHHC
NDSTKLDLIELDLADLASVRRAAEQVESQYSRVDLLINNAGVMATPKTLSKQGLELQFAV
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCEECCHHHHHCCCEEEEHH
NHLGHMALTLKLLPLLAKQHGARVVTVTSGAQYMGRIAWDDLQGIKQYDRWAAYSQSKLA
HHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NVMFALELDKRMRQTASGIASLLAHPGLARTNLQPKSVAANKSWQEGLAYRLMDPMFQSA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
AMGSLPQLHAATAPTAQGGEQYGPRFNFRGYPKLCSVAPLALREEDRQRLWSISEKLLEI
HHCCCCHHHHCCCCCCCCCHHCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: chlorophyllide a; NADP+

Specific reaction: chlorophyllide a + NADP+ = protochlorophyllide + NADPH + H+

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8383668 [H]